BAC Information

Click to search

BAC

Clone NameB6Ng01-092B18
Chromosome4 (Build37)3 (Build37)
Map Location 35,610,406 - 35,610,74276,971,755 - 76,972,927
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSlc35a1, 1700003M02Rik, Gm136, 1810030N24Rik, Zfp292, Cga, Mobkl2b, Ifnk, 3110043O21Rik, LOC620559, LOC621227
Downstream geneLingo2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092B18.bB6Ng01-092B18.g
ACCDH903960DH903961
length9961,154
definitionDH903960|Mus musculus domesticus DNA, BAC clone: B6Ng01-092B18, 5' end.DH903961|Mus musculus domesticus DNA, BAC clone: B6Ng01-092B18, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(35,610,406 - 35,610,742)(76,971,755 - 76,972,927)
sequence
gaattcaaggtccatacctaaacatgataaaagcaatatacagcaaacca
gtagccaacatcaaagtaaatggtgagaagctgcaagcaatcccactaaa
atcagggactagacaaggctgaccactttctccctacctattcaacattg
tacttgaagtcctagccagagcaattcaacaacaaaaggagatcaaggag
ataccaattggaaaggaagaagtcaaaatatcactttttgcagatgatat
gatagtatatataagtgacactaaaaattccaccagagaactcctaaacc
tgataaacagcttcaatgaagtagctggatttaaaattaactcaaaaagt
caatggcctttctctacacaaagaataaacaggttgagaaaaaaaattgg
gaaacaacacccttctcaatagtcacaaataatacaaaataccttggcat
aactctaactatggaagtgaaagatctgtatgataagaacttcaattctc
tgaagaaagaaattaaagatctcagaagagggaaagatctcccatgctca
tggattggcgggatcattatagtaaaaatggctatcttgccaaaagcaat
ctacagattcaatgcaatccccatcaaaattccaactcaattcttcaaag
aattagacagggcaatctgcaaatttaactggagtaacaaaaaaaactag
gatagcaaaaactctgctcaaggacaaaaaaatatctctggtagaatcac
catgtctgacctaaagctgtactacagagcaattgtgatttaaaactgca
tcgtactggtatagctacagacaagtagaccaatggaatagaattgaaga
cccagaaatgaacccacacacctatggtcacttgatctttgacaagtgag
caaaaccatccagtggaaaaagacagcattttcaactaatgatgctggca
caactggcggtatcatgtagaagatgtgaatgatccattcctatct
gaattctagagttgtgaataaatactgtatattgtgtgcttgtggtgtaa
gaatagttctttggacataatagcattcaataaatatcccctagaaattt
ttcactgaaaatgaacactccaaagatgaagacttaaaccttatttaatg
ttctaagtttctagtgacagatgacatcacatatactgcctaaggatatt
taagtacaattaaaatcataatttaaaactaataataattacttttcaaa
atgacaactgggagcctaacattttttaattctaattcaatatttgactt
atcaaaatgtagaactaactaaaatctaaaacatttcataaatgataata
taagcttatgaattccatatttcatcatgttacagtcttaatttatgttc
atagcttctggtatttaatatatacactatttctaacagtaataagaagt
ccatttataactgtaaactttttaatcatgttatattgccacttaaatta
gtctagaactgttttcttatatttatgtccagaattttaaaaggaaagat
aaaccaactttaatgctgacattttaaaagtagtgtaatttctcggactt
gtaaaattaattatttattaaggtaagactaccagctgaaagactaattg
tctcatgcctgtaaatttaatcttataatttaactattttctcaatatat
acaaaacagaaagaattagaatttcaaagcttgactaaaatacataagtg
ttacagtaagtgggcaattagcctgcaaactgacttgtgtctgttttaaa
tgtgactaaccatggacatagtccccaactctggaaaggaggcccttttt
gttactcagcacaggggccaaacatctgttagcaacctttcattatctat
tcgcatttgtgtgataatctttccactaagaaaactaacacagtgatacc
taccttttgttcattaaattctctagaggcaatttaccccctcaatttac
tttatttttaataaattattatttatctttatttgttgtgatatggatgg
gtgatccattacaagtgacagacgagttattgagcaaaaatagttgcctg
atccgaaatgaatttgcatgtcatagtctggataactcataacaggcttc
attt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_35610406_35610742
seq2: B6Ng01-092B18.b_141_476 (reverse)

seq1  ATTATTTGTGACTATTGAGAAGGGTGTTGTTTCCCTAATTTCTTTCTCAG  50
      ||||||||||||||||||||||||||||||||||| | ||| ||||||| 
seq2  ATTATTTGTGACTATTGAGAAGGGTGTTGTTTCCCAATTTTTTTTCTCAA  50

seq1  CCTGTTTATTCTTTGTGTAGAGAAAGGCCATTGACTTGTTTGAGTTAATT  100
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  CCTGTTTATTCTTTGTGTAGAGAAAGGCCATTGACTT-TTTGAGTTAATT  99

seq1  TTATATCCAGCTACTTCACTGAAGCTGTTTATCAGGTTTAGGAGTTCTCT  150
      ||| |||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTAAATCCAGCTACTTCATTGAAGCTGTTTATCAGGTTTAGGAGTTCTCT  149

seq1  GGTAGAATTTTTAGGGTCACTTATATATACTATCATATCATCTGCAAAAA  200
      ||| |||||||||| |||||||||||||||||||||||||||||||||||
seq2  GGTGGAATTTTTAGTGTCACTTATATATACTATCATATCATCTGCAAAAA  199

seq1  GTTATATTTTGACTTCATCTTTTCCAATTTGTATCCCCTTGATCCCCTTT  250
      || ||||||||||||| || ||||||||| ||||| |||||||| |||||
seq2  GTGATATTTTGACTTCTTCCTTTCCAATTGGTATCTCCTTGATCTCCTTT  249

seq1  TGTTGTCAAATTGCTCTGGCTAGGACTTCAAGTACAATGTTGAATAGATA  300
      ||||||  ||||||||||||||||||||||||||||||||||||||| ||
seq2  TGTTGTTGAATTGCTCTGGCTAGGACTTCAAGTACAATGTTGAATAGGTA  299

seq1  GGGAGAAAGTGGGCAGCCTTGTCTAGTCCCTGATTTT  337
      |||||||||||| ||||||||||||||||||||||||
seq2  GGGAGAAAGTGGTCAGCCTTGTCTAGTCCCTGATTTT  336

seq1: chr3_76971755_76972927
seq2: B6Ng01-092B18.g_69_1222 (reverse)

seq1  AAATGAAGCACTGGTTTTAATGAGTTATGCAGACTATGACATGCAAATTC  50
      ||||||||| |||    | ||||||||| |||||||||||||||||||||
seq2  AAATGAAGC-CTG----TTATGAGTTATCCAGACTATGACATGCAAATTC  45

seq1  ATTTTCTGGATCAGCCACGTATTTTTTGCTCAATTTACCTCTGTCTGTCA  100
      ||||   ||||||| ||  || |||||||||||  || ||| ||||||||
seq2  ATTT--CGGATCAGGCAACTA-TTTTTGCTCAA--TAACTC-GTCTGTCA  89

seq1  CTTTGTAAAATGGATCACCCATCAATATTCACAACAAATTAAAGATAAAT  150
      | ||||  ||||||||||||||| ||| |||||||||| |||||||||||
seq2  C-TTGT--AATGGATCACCCATCCATA-TCACAACAAA-TAAAGATAAAT  134

seq1  AATAATTTTAATTAAAAAATAAAGTAAATTGAGGGGGTAAATTGCCTCTA  200
      ||||||||  ||| ||||||||||||||||||||||||||||||||||| 
seq2  AATAATTT--ATT-AAAAATAAAGTAAATTGAGGGGGTAAATTGCCTCT-  180

seq1  AGAGAATTTAATGAACAAAAGGTAGGTATCACTGTGTTAGTTTTCTTAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATTTAATGAACAAAAGGTAGGTATCACTGTGTTAGTTTTCTTAGT  230

seq1  GGAAAGATTATCACACAAATGCGAATAGATAATGAAAGGTTGCTAACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGATTATCACACAAATGCGAATAGATAATGAAAGGTTGCTAACAGA  280

seq1  TGTTTGGCCCCTGTGCTGAGTAACAAAAAGGGCCTCC-TTCCAGAGTTGG  349
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  TGTTTGGCCCCTGTGCTGAGTAACAAAAAGGGCCTCCTTTCCAGAGTTGG  330

seq1  GGACTATGTCCATGGTTAGTCACATTTAAAACAGACACAAGTCAGTTTGC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTATGTCCATGGTTAGTCACATTTAAAACAGACACAAGTCAGTTTGC  380

seq1  AGGCTAATTGCCCACTTACTGTAACACTTATGTATTTTAGTCAAGCTTTG  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTAATTGCCCACTTACTGTAACACTTATGTATTTTAGTCAAGCTTTG  430

seq1  AAATTCTAATTCTTTCTGTTTTGTATATATTGAGAAAATAGTTAAATTAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCTAATTCTTTCTGTTTTGTATATATTGAGAAAATAGTTAAATTAT  480

seq1  AAGATTAAATTTACAGGCATGAGACAATTAGTCTTTCAGCTGGTAGTCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTAAATTTACAGGCATGAGACAATTAGTCTTTCAGCTGGTAGTCTT  530

seq1  ACCTTAATAAATAATTAATTTTACAAGTCCGAGAAATTACACTACTTTTA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAATAAATAATTAATTTTACAAGTCCGAGAAATTACACTACTTTTA  580

seq1  AAATGTCAGCATTAAAGTTGGTTTATCTTTCCTTTTAAAATTCTGGACAT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTCAGCATTAAAGTTGGTTTATCTTTCCTTTTAAAATTCTGGACAT  630

seq1  AAATATAAGAAAACAGTTCTAGACTAATTTAAGTGGCAATATAACATGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAGAAAACAGTTCTAGACTAATTTAAGTGGCAATATAACATGAT  680

seq1  TAAAAAGTTTACAGTTATAAATGGACTTCTTATTACTGTTAGAAATAGTG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAAGTTTACAGTTATAAATGGACTTCTTATTACTGTTAGAAATAGTG  730

seq1  TATATATTAAATACCAGAAGCTATGAACATAAATTAAGACTGTAACATGA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATTAAATACCAGAAGCTATGAACATAAATTAAGACTGTAACATGA  780

seq1  TGAAATATGGAATTCATAAGCTTATATTATCATTTATGAAATGTTTTAGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATATGGAATTCATAAGCTTATATTATCATTTATGAAATGTTTTAGA  830

seq1  TTTTAGTTAGTTCTACATTTTGATAAGTCAAATATTGAATTAGAATTAAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTAGTTCTACATTTTGATAAGTCAAATATTGAATTAGAATTAAA  880

seq1  AAATGTTAGGCTCCCAGTTGTCATTTTGAAAAGTAATTATTATTAGTTTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTTAGGCTCCCAGTTGTCATTTTGAAAAGTAATTATTATTAGTTTT  930

seq1  AAATTATGATTTTAATTGTACTTAAATATCCTTAGGCAGTATATGTGATG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTATGATTTTAATTGTACTTAAATATCCTTAGGCAGTATATGTGATG  980

seq1  TCATCTGTCACTAGAAACTTAGAACATTAAATAAGGTTTAAGTCTTCATC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCTGTCACTAGAAACTTAGAACATTAAATAAGGTTTAAGTCTTCATC  1030

seq1  TTTGGAGTGTTCATTTTCAGTGAAAAATTTCTAGGGGATATTTATTGAAT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGAGTGTTCATTTTCAGTGAAAAATTTCTAGGGGATATTTATTGAAT  1080

seq1  GCTATTATGTCCAAAGAACTATTCTTACACCACAAGCACACAATATACAG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTATGTCCAAAGAACTATTCTTACACCACAAGCACACAATATACAG  1130

seq1  TATTTATTCACAACTCTAGAATTC  1173
      ||||||||||||||||||||||||
seq2  TATTTATTCACAACTCTAGAATTC  1154