BAC Information

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BAC

Clone NameB6Ng01-092C10
Chromosome3 (Build37)
Map Location 78,687,892 - 78,829,765
singlet/doubletdoublet
Overlap geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766
Upstream geneEG626461, LOC667526, LOC626479, LOC100041691
Downstream geneRapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092C10.bB6Ng01-092C10.g
ACCDH903990DH903991
length892862
definitionDH903990|Mus musculus domesticus DNA, BAC clone: B6Ng01-092C10, 5' end.DH903991|Mus musculus domesticus DNA, BAC clone: B6Ng01-092C10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,828,891 - 78,829,765)(78,687,892 - 78,688,758)
sequence
gaattctatcttggctacttgacattatgttaaagtaacctgaactgaac
cgtgcagctcacaacacagaccggacttctgttagccacaagtgggaagg
tctctcttgaatccaagcacttctggagagatgatgatggcgtggctggt
aggaaattagcctctgctcaaaattcttgggttaatttggacaaaattct
catttttaagccctcatgctgtgagccaccagggcacatgctaaccctca
ggggagctgctgaggtggcctgttatttcctcatggagtaaacaatgggg
gtggggtgcgggaatatgattttaactttctagcatcactgcaggcttcc
cttcctctgatttagaagtcttcaagggagcagggtgataagatggcagt
aaatgtaggactgagcgactggagggtgtgagtcatggagaaacgtgaag
ggaggtggtagttcaggaaagaggaatttacatgtaaaactagaagctgg
ggcaggagagatgacttgatgctaaagagtacttagcagaggacccaggt
tcaattcccagaacctccacagtagctcacaaatattcccaagtccaatt
caaggggatctgaggcatgcatccatggcaaatgggaaggtaacggtcca
acatcccttgcaaggttccactcccaatggcctaactccctcttcttagg
tttgatctcctaaaggttccatatcctccaaatatagctgcttgctggag
accaagacttcaaatgcagggcttaataattttcttactctcttgcttta
agacacgcttttgctatgtagcctagtctggccactaacttagatactct
gtctgcgcagccacccaaaggctgagatttgagacatgtgct
gaattctaaaattccatgcatttgattcaaattttcagttatgccttata
cctctcaatccatggcctttataaaacagactatggccattcactttttt
actgctcactctcagttactacgaatactccatgaattatttagaaaact
tggcccatgtaaacaatcatctctaaacaaacattgctctgaaatggggt
catccgtggcatattgccttggagagctgtgctaggcacgcgtgtttaca
tcaaaaggacagatgtggtgcaagtgcgaagaaggcagccaagctcagtc
agcgagcgctgaacgaacgcacagggaggaagttgtcctggaactcacat
tagggtcagaatctgaatctatctcaaacccagccttgaatttcctgtcc
tctgtgcctgcgctcttggaggacgagagaaatattgagatatggaaggg
agttttacacaagaaagaagaatgtccttcaaaatgtggtaaaaatgcta
ggaatatagagatttctctccccatgagcttctggaggctatcgcgaatt
ctcctagagactgtttgaatttatactttctgtgcatactgccttcagcc
atattagatattagttccccaccccacccatatctctctctctctctctc
tctctctctctctctctctctcacacagacgcacacgcacacgcgcactc
gcacacacccactccttttgcgttttgcatatgataaagaatcactctaa
atcgtgtctcctaaaaatgctcctttagcattttgatatgcccatctggg
caggcggggaattaaacacccctccggtgatttcccatcatctagacaga
ttcccctgggtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_78828891_78829765
seq2: B6Ng01-092C10.b_40_913 (reverse)

seq1  CAGCCTTTGGGTGGCTGCGCAGACAGACTACTATAAGTTAGTGGCCAGCC  50
      ||||||||||||||||||||||||||| || | ||||||||||||||| |
seq2  CAGCCTTTGGGTGGCTGCGCAGACAGAGTA-TCTAAGTTAGTGGCCAGAC  49

seq1  TAGGCTACATAGCAAAAGCCTGTCTTAAAGCAAGAGAATAAGAAAATTAT  100
      ||||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  TAGGCTACATAGCAAAAGCGTGTCTTAAAGCAAGAGAGTAAGAAAATTAT  99

seq1  TAAGCCCTGCATTTGAAGTCTTGGTCCCCAGCCTGCAGCTATATTTGGAG  150
      |||||||||||||||||||||||||| |||||  ||||||||||||||||
seq2  TAAGCCCTGCATTTGAAGTCTTGGTCTCCAGCAAGCAGCTATATTTGGAG  149

seq1  GCTATGGAACCTTTAGGAGATCAAACCTAAGAAGAGGGAGTTAGGCCATT  200
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGGAACCTTTAGGAGATCAAACCTAAGAAGAGGGAGTTAGGCCATT  199

seq1  GGGAGTGGAACCTTGCAAGGGATGTTGGACCCTTACCTTCCCATTTGCCA  250
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  GGGAGTGGAACCTTGCAAGGGATGTTGGACCGTTACCTTCCCATTTGCCA  249

seq1  TGGATGCATGCCTCAGATCCCCTTGAATTGGACTTGGGAATATTTGTGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGCATGCCTCAGATCCCCTTGAATTGGACTTGGGAATATTTGTGAG  299

seq1  CTACTGTGGAGGTTCTGGGAATTGAACCTGGGTCCTCTGCTAAGTACTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGGAGGTTCTGGGAATTGAACCTGGGTCCTCTGCTAAGTACTCT  349

seq1  TTAGCATCAAGTCATCTCTCCTGCCCCAGCTTCTAGTTTTACATGTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCATCAAGTCATCTCTCCTGCCCCAGCTTCTAGTTTTACATGTAAAT  399

seq1  TCCTCTTTCCTGAACTACCACCTCCCTTCACGTTTCTCCATGACTCACAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTTCCTGAACTACCACCTCCCTTCACGTTTCTCCATGACTCACAC  449

seq1  CCTCCAGTCGCTCAGTCCTACATTTACTGCCATCTTATCACCCTGCTCCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGTCGCTCAGTCCTACATTTACTGCCATCTTATCACCCTGCTCCC  499

seq1  TTGAAGACTTCTAAATCAGAGGAAGGGAAGCCTGCAGTGATGCTAGAAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGACTTCTAAATCAGAGGAAGGGAAGCCTGCAGTGATGCTAGAAAG  549

seq1  TTAAAATCATATTCCCGCACCCCACCCCCATTGTTTACTCCATGAGGAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAATCATATTCCCGCACCCCACCCCCATTGTTTACTCCATGAGGAAA  599

seq1  TAACAGGCCACCTCAGCAGCTCCCCTGAGGGTTAGCATGTGCCCTGGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGGCCACCTCAGCAGCTCCCCTGAGGGTTAGCATGTGCCCTGGTGG  649

seq1  CTCACAGCATGAGGGCTTAAAAATGAGAATTTTGTCCAAATTAACCCAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAGCATGAGGGCTTAAAAATGAGAATTTTGTCCAAATTAACCCAAG  699

seq1  AATTTTGAGCAGAGGCTAATTTCCTACCAGCCACGCCATCATCATCTCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTGAGCAGAGGCTAATTTCCTACCAGCCACGCCATCATCATCTCTC  749

seq1  CAGAAGTGCTTGGATTCAAGAGAGACCTTCCCACTTGTGGCTAACAGAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTGCTTGGATTCAAGAGAGACCTTCCCACTTGTGGCTAACAGAAG  799

seq1  TCCTGTCTGTGTTCTGAGCTGCACGGTTCAGTTCAGGTTACTTTAACATA  850
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TCCGGTCTGTGTTGTGAGCTGCACGGTTCAGTTCAGGTTACTTTAACATA  849

seq1  ATGTCAAGTAGCCAAGATAGAATTC  875
      |||||||||||||||||||||||||
seq2  ATGTCAAGTAGCCAAGATAGAATTC  874

seq1: chr3_78687892_78688758
seq2: B6Ng01-092C10.g_68_929

seq1  GAATTCTAAAATTCCATGCATTTGATTCAAATTTTCAGTTATGCCTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAAATTCCATGCATTTGATTCAAATTTTCAGTTATGCCTTATA  50

seq1  CCTCTCAATCCATGGCCTTTATAAAACAGACTATGGCCATTCACTTTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCAATCCATGGCCTTTATAAAACAGACTATGGCCATTCACTTTTTT  100

seq1  ACTGCTCACTCTCAGTTACTACGAATACTCCATGAATTATTTAGAAAACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTCACTCTCAGTTACTACGAATACTCCATGAATTATTTAGAAAACT  150

seq1  TGGCCCATGTAAACAATCATCTCTAAACAAACATTGCTCTGAAATGGGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCATGTAAACAATCATCTCTAAACAAACATTGCTCTGAAATGGGGT  200

seq1  CATCCGTGGCATATTGCCTTGGAGAGCTGTGCTAGGCACGCGTGTTTACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCGTGGCATATTGCCTTGGAGAGCTGTGCTAGGCACGCGTGTTTACA  250

seq1  TCAAAAGGACAGATGTGGTGCAAGTGCGAAGAAGGCAGCCAAGCTCAGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAGGACAGATGTGGTGCAAGTGCGAAGAAGGCAGCCAAGCTCAGTC  300

seq1  AGCGAGCGCTGAACGAACGCACAGGGAGGAAGTTGTCCTGGAACTCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGCGCTGAACGAACGCACAGGGAGGAAGTTGTCCTGGAACTCACAT  350

seq1  TAGGGTCAGAATCTGAATCTATCTCAAACCCAGCCTTGAATTTCCTGTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTCAGAATCTGAATCTATCTCAAACCCAGCCTTGAATTTCCTGTCC  400

seq1  TCTGTGCCTGCGCTCTTGGAGGACGAGAGAAATATTGAGATATGGAAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCTGCGCTCTTGGAGGACGAGAGAAATATTGAGATATGGAAGGG  450

seq1  AGTTTTACACAAGAAAGAAGAATGTCCTTCAAAATGTGGTAAAAATGCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTACACAAGAAAGAAGAATGTCCTTCAAAATGTGGTAAAAATGCTA  500

seq1  GGAATATAGAGATTTCTCTCCCCATGAGCTTCTGGAGGCTATCGCGAATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATATAGAGATTTCTCTCCCCATGAGCTTCTGGAGGCTATCGCGAATT  550

seq1  CTCCTAGAGACTGTTTGAATTTATACTTTCTGTGCATACTGCCTTCAGCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTAGAGACTGTTTGAATTTATACTTTCTGTGCATACTGCCTTCAGCC  600

seq1  ATATTAGATATTAGTTCCCCACCCCACCCATATCTCTCTCTCTCTCTCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTAGATATTAGTTCCCCACCCCACCCATATCTCTCTCTCTCTCTCTC  650

seq1  TCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACACACAC  700
      ||||||||||||||||||||||||||| || ||||| ||||| | ||| |
seq2  TCTCTCTCTCTCTCTCTCTCTCACACAGACGCACACGCACACGCGCACTC  700

seq1  ACACACACACACTCCTTTTGCAATTTGCATATGATAAAACAATCACTCTC  750
       ||||||| ||||||||||||  |||||||||||| ||| ||||||||| 
seq2  GCACACACCCACTCCTTTTGCGTTTTGCATATGAT-AAAGAATCACTCTA  749

seq1  AATCCTGTCTCCTACAAATGCTCCTTTAAACATTTTGATATGCCCATCTG  800
      |||| ||||||||| |||||||||||| | ||||||||||||||||||||
seq2  AATCGTGTCTCCTAAAAATGCTCCTTT-AGCATTTTGATATGCCCATCTG  798

seq1  GCCAGGCGGTGAGTTGAAACACCCATCCAGTTAATTTCCCATCCATCTTG  850
      | ||||||| || || |||||||| ||| | | ||||||||| ||||| |
seq2  GGCAGGCGGGGAATT-AAACACCCCTCC-GGTGATTTCCCAT-CATCTAG  845

seq1  ACAGATTCCCCTGGGTT  867
      |||||||||||||||||
seq2  ACAGATTCCCCTGGGTT  862