BAC Information

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BAC

Clone NameB6Ng01-092E11
Chromosome3 (Build37)
Map Location 94,576,172 - 94,781,224
singlet/doubletdoublet
Overlap geneCgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb
Upstream geneEG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801
Downstream geneZfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092E11.bB6Ng01-092E11.g
ACCDH904084DH904085
length1,0411,036
definitionDH904084|Mus musculus domesticus DNA, BAC clone: B6Ng01-092E11, 5' end.DH904085|Mus musculus domesticus DNA, BAC clone: B6Ng01-092E11, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,780,181 - 94,781,224)(94,576,172 - 94,577,208)
sequence
gaattcttctaaacctcttacccaaaccaaagcagctctgtttgctatat
gagtgttcagcaaacatgttctcatacagtgtggacccagatgagaagct
aggaaaaccagggggcttctcccataagtggggatcattaatagactgca
ctccaagtaatttcagggtaaggagaagtgtaacaagatagtataactat
tttcaaacctgaccaggcatagagttggaagatggaacgccagtgccttc
tttattatctcaggccaagagagatgtggaagacaatttttttttttggt
ttttcgagacagggtttctctgtatagtcctggctgtcttggaactcact
ctatagaccaggttggcctcaaactcagaaatctgcctgcctctgcctcc
caagtgctgggattaaaggtatgcgccaccaccgcccggctaccaaggtt
cttttacaaaggcctttctacaaacacactttctgaccacagaatctgga
gttatgaatcaggtacagaaaaaaaaaggcacagatggtcaacgacttaa
tgtagtggaagaaagagttgagaagcagcaggccaagcaagagcttgtat
ttcaaactgactttatactcatagtcagagatcagagagatcaaaatatc
aaaataaaagagaattctcaaagatggcaaagccactagcaataaatacc
tctcatctgacacctgtagtgttttataagttaaaaaagtacaattcttc
ccccaacagacatcctgttattagcctattacagtactggtgcttgcaga
atgggccattttctcaaaagaccattctagagttcaagtgaggaagttac
aagctgaactaaggggccctgactctgagtatacatctctttacactgtc
ttatgttccttttcccaatcagcccaaccccagacacacaccacaacaca
acttcaccttaggtccaaatgcttatgaaactaaccaacgtaatccacta
agcttcagtcaggaaaataatggttcccttaaggtctagac
gaattcactatgtagaccagacttaccttgaactcacagagatctactgc
ttctccttcccaaatgctaattaaaggcatgcaaccaccacacccgacct
attagctgtgttcttatccttcataaactacaacaccaagagtatgaaac
tgggtttattttaacttttatgacttcctcataactctttcatgaactat
catccatgcatgatgaaaaaagattgacttttaggggaaaaaaaaaggtg
gaagtgagactcttgggagtgttgtgtcaccaacccgccagcaaaactgt
gacttgggatactgggaagatgcacatcacccactacaccccttgagccc
catgtccaggctgtgtgctttccaaatagcctttggattacaacttggac
tccgcaattaggtcagcgagccaagcggataccagcatcccagtccaggg
attatatttctcaatgtaaattaataaacatcctaaaaaaattgtttttt
tatcatatagttaatgaatttccccctcaaagagcaggttttgcagtgct
gaccaaattaaggttctgaacctgcaaaaatgaccctggagtttttacaa
atccacctatattcagctaagatgtcttataggaggtagccagcagtttt
tgcctgtaccataaactggctgttgacagctcttttttattagagagctc
tataaccaacaaggagagcagccccgcaaagctgtgaacccaaacctgag
ctgctaggatgaagcttgaaagtcacgctcatggaggcagccccacgagc
gtgggcagaggggtcccaagtgaggcagcagagcatcccaacctgccact
ctacaccccaagtaccaagtaccaaagtacctttttaagttcctcaactt
ggtgagtatctcttgtactggctcgggcctgctctaagtcctctggtaag
acctcatcttctccccagttcttcttccatctcctccttcttcattcgca
gttgcagcagttgagttcagcaaggttttaaacaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94780181_94781224
seq2: B6Ng01-092E11.b_44_1084 (reverse)

seq1  GTCTAGACCTAAGAGGAACCATTATTTTCCTGACTGAAGCTTAGTGGACT  50
      |||||||||| |  |||||||||||||||||||||||||||||||||| |
seq2  GTCTAGACCTTAAGGGAACCATTATTTTCCTGACTGAAGCTTAGTGGATT  50

seq1  ACTGTTGGTTAGTTTCATAAGCATTTGGACCTAAGGTGAAGTTGTGTTTG  100
      || ||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AC-GTTGGTTAGTTTCATAAGCATTTGGACCTAAGGTGAAGTTGTG-TTG  98

seq1  TGTGTGTGTGTCTGGGGTTGGGGCTGATTGGGAAAAGGAACATAAGACAG  150
      || |||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TG-GTGTGTGTCTGGGGTT-GGGCTGATTGGGAAAAGGAACATAAGACAG  146

seq1  TGTAAAGAGATGTATACTCAGAGTCAGGGCCCCTTGGTTCAGCTTGTAAC  200
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TGTAAAGAGATGTATACTCAGAGTCAGGGCCCCTTAGTTCAGCTTGTAAC  196

seq1  TTCCTCACTTGAACTCTAGAATGGTCTTTTGAGAAAATGGCCCATTCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCACTTGAACTCTAGAATGGTCTTTTGAGAAAATGGCCCATTCTGC  246

seq1  AAGCACCAGTACTGTAATAGGCTAATAACAGGATGTCTGTTGGGGGAAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACCAGTACTGTAATAGGCTAATAACAGGATGTCTGTTGGGGGAAGA  296

seq1  ATTGTACTTTTTTAACTTATAAAACACTACAGGTGTCAGATGAGAGGTAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTACTTTTTTAACTTATAAAACACTACAGGTGTCAGATGAGAGGTAT  346

seq1  TTATTGCTAGTGGCTTTGCCATC-TTGAGAATTCTCTTTTATTTTGATAT  399
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TTATTGCTAGTGGCTTTGCCATCTTTGAGAATTCTCTTTTATTTTGATAT  396

seq1  TTTGATCTCTCTGATCTCTGACTATGAGTATAAAGTCAGTTTGAAATACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATCTCTCTGATCTCTGACTATGAGTATAAAGTCAGTTTGAAATACA  446

seq1  AGCTCTTGCTTGGCCTGCTGCTTCTCAACTCTTTCTTCCACTACATTAAG  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTTGCTTGGCCTGCTGCTTCTCAACTCTTTCTTCCACTACATTAAG  496

seq1  TCGTTGACCATCTGTGCCTTTTTTTTTCTGTACCTGATTCATAACTCCAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTGACCATCTGTGCCTTTTTTTTTCTGTACCTGATTCATAACTCCAG  546

seq1  ATTCTGTGGTCAGAAAGTGTGTTTGTAGAAAGGCCTTTGTAAAAGAACCT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGGTCAGAAAGTGTGTTTGTAGAAAGGCCTTTGTAAAAGAACCT  596

seq1  TGGTAGCCGGGCGGTGGTGGCGCATACCTTTAATCCCAGCACTTGGGAGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAGCCGGGCGGTGGTGGCGCATACCTTTAATCCCAGCACTTGGGAGG  646

seq1  CAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAACCTGGTCTATAGAGTGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGGCAGGCAGATTTCTGAGTTTGAGGCCAACCTGGTCTATAGAGTGA  696

seq1  GTTCCAAGACAGCCAGGACTATACAGAGAAACCCTGTCTCGAAAAACCAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCAAGACAGCCAGGACTATACAGAGAAACCCTGTCTCGAAAAACCAA  746

seq1  AAAAAAAAATTGTCTTCCACATCTCTCTTGGCCTGAGATAATAAAGAAGG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAATTGTCTTCCACATCTCTCTTGGCCTGAGATAATAAAGAAGG  796

seq1  CACTGGCGTTCCATCTTCCAACTCTATGCCTGGTCAGGTTTGAAAATAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGGCGTTCCATCTTCCAACTCTATGCCTGGTCAGGTTTGAAAATAGT  846

seq1  TATACTATCTTGTTACACTTCTCCTTACCCTGAAATTACTTGGAGTGCAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTATCTTGTTACACTTCTCCTTACCCTGAAATTACTTGGAGTGCAG  896

seq1  TCTATTAATGATCCCCACTTATGGGAGAAGCCCCCTGGTTTTCCTAGCTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTAATGATCCCCACTTATGGGAGAAGCCCCCTGGTTTTCCTAGCTT  946

seq1  CTCATCTGGGTCCACACTGTATGAGAACATGTTTGCTGAACACTCATATA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATCTGGGTCCACACTGTATGAGAACATGTTTGCTGAACACTCATATA  996

seq1  GCAAACAGAGCTGCTTTGGTTTGGGTAAGAGGTTTAGAAGAATTC  1044
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAACAGAGCTGCTTTGGTTTGGGTAAGAGGTTTAGAAGAATTC  1041

seq1: chr3_94576172_94577208
seq2: B6Ng01-092E11.g_69_1104

seq1  GAATTCACTATGTAGACCAGACTTACCTTGAACTCACAGAGATCTACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTATGTAGACCAGACTTACCTTGAACTCACAGAGATCTACTGC  50

seq1  TTCTCCTTCCCAAATGCTAATTAAAGGCATGCAACCACCACACCCGACCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTTCCCAAATGCTAATTAAAGGCATGCAACCACCACACCCGACCT  100

seq1  ATTAGCTGTGTTCTTATCCTTCATAAACTACAACACCAAGAGTATGAAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGCTGTGTTCTTATCCTTCATAAACTACAACACCAAGAGTATGAAAC  150

seq1  TGGGTTTATTTTAACTTTTATGACTTCCTCATAACTCTTTCATGAACTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTATTTTAACTTTTATGACTTCCTCATAACTCTTTCATGAACTAT  200

seq1  CATCCATGCATGATGAAAAAAGATTGACTTTTAGGGGAAAAAAAAAGGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCATGCATGATGAAAAAAGATTGACTTTTAGGGGAAAAAAAAAGGTG  250

seq1  GAAGTGAGACTCTTGGGAGTGTTGTGTCACCAACCCGCCAGCAAAACTGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTGAGACTCTTGGGAGTGTTGTGTCACCAACCCGCCAGCAAAACTGT  300

seq1  GACTTGGGATACTGGGAAGATGCACATCACCCACTACACCCCTTGAGCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTGGGATACTGGGAAGATGCACATCACCCACTACACCCCTTGAGCCC  350

seq1  CATGTCCAGGCTGTGTGCTTTCCAAATAGCCTTTGGATTACAACTTGGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTCCAGGCTGTGTGCTTTCCAAATAGCCTTTGGATTACAACTTGGAC  400

seq1  TCCGCAATTAGGTCAGCGAGCCAAGCGGATACCAGCATCCCAGTCCAGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCAATTAGGTCAGCGAGCCAAGCGGATACCAGCATCCCAGTCCAGGG  450

seq1  ATTATATTTCTCAATGTAAATTAATAAACATCCTAAAAAAATTGTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATATTTCTCAATGTAAATTAATAAACATCCTAAAAAAATTGTTTTTT  500

seq1  TATCATATAGTTAATGAATTTCCCCCTCAAAGAGCAGGTTTTGCAGTGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCATATAGTTAATGAATTTCCCCCTCAAAGAGCAGGTTTTGCAGTGCT  550

seq1  GACCAAATTAAGGTTCTGAACCTGCAAAAATGACCCTGGAG-TTTTACAA  599
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GACCAAATTAAGGTTCTGAACCTGCAAAAATGACCCTGGAGTTTTTACAA  600

seq1  ATCCACCTATATTCAGCTAAGATGTCTTATAGGAGGTAGCCAGCAGTTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCACCTATATTCAGCTAAGATGTCTTATAGGAGGTAGCCAGCAGTTTT  650

seq1  TGCCTGTACCATAAACTGGCTGTTGACAGCTCTTTTTTATTAGAGAGCTC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGTACCATAAACTGGCTGTTGACAGCTCTTTTTTATTAGAGAGCTC  700

seq1  TATAACCAACAAGGAGAGCAGCCCCGCAAAGCTGTGAACCCAAACCTGAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCAACAAGGAGAGCAGCCCCGCAAAGCTGTGAACCCAAACCTGAG  750

seq1  CTGCTAGGATGAAGCTTGAAAGTCACGCTCATGGAGGCAGCCCCACGAGC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTAGGATGAAGCTTGAAAGTCACGCTCATGGAGGCAGCCCCACGAGC  800

seq1  GTGGGCAGAGGGGTCCCAAGTGAGGCAGCAGAGCATCCCAACCTGCCACT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGAGGGGTCCCAAGTGAGGCAGCAGAGCATCCCAACCTGCCACT  850

seq1  CTACACCCCAAGTACCAAGTACC-AAGTACCTTTTTAAGTTCCTCAACCT  898
      ||||||||||||||||||||||| |||||||||||||||||||||||| |
seq2  CTACACCCCAAGTACCAAGTACCAAAGTACCTTTTTAAGTTCCTCAACTT  900

seq1  GGTGAGTATCTCTTGTACTGGCTCGGGCCTGCTCTAAGTCCCTCT-GTAA  947
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  GGTGAGTATCTCTTGTACTGGCTCGGGCCTGCTCTAAGT-CCTCTGGTAA  949

seq1  GACCTCCATCTTCTCCCCAAGTTCCTCTTCCATCTCCTCCTTCTCCATCC  997
      ||||| |||||||||||| ||||| ||||||||||||||||||| ||| |
seq2  GACCT-CATCTTCTCCCC-AGTTCTTCTTCCATCTCCTCCTTCTTCATTC  997

seq1  GCAGTTGCAGCAGTCTGAGTTCAGCAAGGTTTTAAACAAA  1037
      |||||||||||||| |||||||||||||||||||||||||
seq2  GCAGTTGCAGCAGT-TGAGTTCAGCAAGGTTTTAAACAAA  1036