BAC Information

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BAC

Clone NameB6Ng01-092K02
Chromosome3 (Build37)
Map Location 147,845,430 - 148,020,320
singlet/doubletdoublet
Overlap genenone
Upstream genePpia-ps3_1528.1
Downstream geneLOC100040354, Lphn2, LOC100040368, LOC668893, EG381483
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092K02.bB6Ng01-092K02.g
ACCDH904338DH904339
length1,1111,104
definitionDH904338|Mus musculus domesticus DNA, BAC clone: B6Ng01-092K02, 5' end.DH904339|Mus musculus domesticus DNA, BAC clone: B6Ng01-092K02, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(148,019,204 - 148,020,320)(147,845,430 - 147,846,534)
sequence
gaattcttctagtaggctcatatgtctctctgacactctcatcactgtat
acatgtgtgagtccttgagtcctgccttcctttcttgtactacaatacac
taagggctgtcttgaatatcccttttcttcttatctgtggccctgaagga
tcagccacttttcaaagggagccctagtttcctttattagaaaagtcagg
gtctagctactaggtgtacttacccttgtttgagctgtctgctttaatac
ttgtaactgacagagcaagcaccagagtctgacagtgtctgaccaggttc
catcaccatgttgccagaaaactacaaaagcagtgagcaggggatctact
gtcataattgaccagaaaaattaaaactgttggtagaagtgctgactgag
taaagtatcattatcagttccataccatagtaatgtgtaagtgttcactt
tctacatggacagtcttgcatttccaaagcaatttgatccccaaacatct
gaacgcatagcacacagtctgctaataatgtgagtatatccatgtgtagt
ctgtttagagagttgctggatgagatgaaaatagtcagggcaaagatagt
ggtggggaaatgtctatgaagtcttttatttttcctgtgccataccatcc
taccaaatcattgtgcagtgccaagtacaaaggatgacttcaatttccca
ggattacatatctacaaccagttgggcgtttgaaaataagacaatgatag
attttcagaaagcaggaaatgtgctgagtgaattttccatttctttcttt
cccccatttttctttagctttagatgatcatatttttgaattttattttt
ttgttttccttcaatttagatgatcttattgtaatatcactttaaaatag
ctgaataaaagaatctgataccaatttttataagagagtttacgttaaac
atgtgcatgtacattaagcatgtcaaacatcacagtttacaacttcatct
cttgaatgtacttgatgtaggactgctagaatggcccagcattcaagagt
tataggcttcattctcttccccaaagccttagaaagagaagggatcttaa
tatatttgcct
gaattcagatgagggtggaccttgggcatctgcttattcaggtctttggc
agatggctctcactttatgttctgatttgtatttgtgggaggagtaaggg
aaagaataacatgttattgacgatttgttttggtttacaatacaaacaga
gtggaacgaattttggtgaaggcctgggaaggcctcagaaatcacctgtt
atttatcagtctcctgaatcaatacaacagctcctattaatgtcttttat
gcccatataatgtgtaacgagatgatactgagtgctttctatgccggcca
atcatttctgtttctttaggtaaatttccatttttattgcatcttttgtg
tttttatgatggttagaaatctacaggttttatttcctagactttttcca
aactgtctttgcttttgcactaagacagagagtagtggtcttcctttcta
gcagttcaggatcgttatggacagcggcagagctgggctgactctaggac
agcagatagaggaatgcagggtggaccaggagctgcctcctctgcgctga
cgacatcatggaactcaagaatccggaatgccaggcttcttctcccttac
cactgagtgtcatgctcaggattgatgacttttggttaacagaggttttt
tgttaaaaattatcatagttaagcttcaactggattggatttagaatcac
ttaggagtcatacctaggatacctctatagggtttttattgaggagggca
atactcaccctcaatctgttttcaccttgctgtggggctagggtgttctg
cagaaagaaagaaaaaaggagaaatgtagatgagcattggcatccctttc
tgtgatttctaaagacagaaacccagtcgcctcatcctctcgctcatcct
ctcggctcatcttctcgctcatctctcgctcattcctctcgctcatctct
taccccacgcaagagccgctctcaccacttcagcttcccaccacagtgat
tacacccagccatgctgattctaaagaaacttcttcctaagttgctttgg
gaagaaatgttttgttgctgcaactaagaaaggacatgacttgggctcta
aatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_148019204_148020320
seq2: B6Ng01-092K02.b_46_1156 (reverse)

seq1  AGGCAAAATAT-TTAAGATCCCTCTCTTTTCTTACAGCTTTGGGGAGATG  49
      |||| |||||| ||||||||||| ||| ||  ||  ||||||||||   |
seq2  AGGC-AAATATATTAAGATCCCT-TCTCTTTCTAAGGCTTTGGGGAAGAG  48

seq1  AATGAAGCCTATAACTCTTGAATGCTTGGCCAATCTTAGCAGTTCTTACA  99
      |||||||||||||||||||||||||| ||||| || |||||| || ||||
seq2  AATGAAGCCTATAACTCTTGAATGCTGGGCCATTC-TAGCAG-TCCTACA  96

seq1  TCAAGTACATTCAAGAGATG-AGTTGTTAAACTGTGATGTTTTGACATGC  148
      |||||||||||||||||||| ||||| |||||||||||| ||||||||||
seq2  TCAAGTACATTCAAGAGATGAAGTTG-TAAACTGTGATG-TTTGACATGC  144

seq1  TTAATGTACATGCACATGTTTAACGTGTGAGAAAACTCTCTTATAAAAAT  198
      ||||||||||||||||||||||||||      ||||||||||||||||||
seq2  TTAATGTACATGCACATGTTTAACGT------AAACTCTCTTATAAAAAT  188

seq1  TGGTATCAGATTCTTTTATTCAGCTATTTT-AAGTGATA-TACAATAAGA  246
      |||||||||||||||||||||||||||||| |||||||| ||||||||||
seq2  TGGTATCAGATTCTTTTATTCAGCTATTTTAAAGTGATATTACAATAAGA  238

seq1  TCATCTAAATTGAAGGAAAAC-AAAAAATAAAATTC-AAAATATGATCAT  294
      ||||||||||||||||||||| |||||||||||||| |||||||||||||
seq2  TCATCTAAATTGAAGGAAAACAAAAAAATAAAATTCAAAAATATGATCAT  288

seq1  CTAAAGCTAAAGAAAAATGGGGGAAAGAAAGAAATGGAAAATTCACTCAG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCTAAAGAAAAATGGGGGAAAGAAAGAAATGGAAAATTCACTCAG  338

seq1  CACATTTCCTGCTTTCTGAAAATCTATCATTGTCTTATTTTCAAACGCCC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATTTCCTGCTTTCTGAAAATCTATCATTGTCTTATTTTCAAACGCCC  388

seq1  AACTGGTTGTAGATATGTAATCCTGGGAAATTGAAGTCATCCTTTGTACT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTTGTAGATATGTAATCCTGGGAAATTGAAGTCATCCTTTGTACT  438

seq1  TGGCACTGCACAATGATTTGGTAGGATGGTATGGCACAGGAAAAATAAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCACTGCACAATGATTTGGTAGGATGGTATGGCACAGGAAAAATAAAA  488

seq1  GACTTCATAGACATTTCCCCACCACTATCTTTGCCCTGACTATTTTCATC  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCATAGACATTTCCCCACCACTATCTTTGCCCTGACTATTTTCATC  538

seq1  TCATCCAGCAACTCTCTAAACAGACTACACATGGATATACTCACATTATT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCCAGCAACTCTCTAAACAGACTACACATGGATATACTCACATTATT  588

seq1  AGCAGACTGTGTGCTATGCGTTCAGATGTTTGGGGATCAAATTGCTTTGG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGACTGTGTGCTATGCGTTCAGATGTTTGGGGATCAAATTGCTTTGG  638

seq1  AAATGCAAGACTGTCCATGTAGAAAGTGAACACTTACACATTACTATGGT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCAAGACTGTCCATGTAGAAAGTGAACACTTACACATTACTATGGT  688

seq1  ATGGAACTGATAATGATACTTTACTCAGTCAGCACTTCTACCAACAGTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAACTGATAATGATACTTTACTCAGTCAGCACTTCTACCAACAGTTT  738

seq1  TAATTTTTCTGGTCAATTATGACAGTAGATCCCCTGCTCACTGCTTTTGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTCTGGTCAATTATGACAGTAGATCCCCTGCTCACTGCTTTTGT  788

seq1  AGTTTTCTGGCAACATGGTGATGGAACCTGGTCAGACACTGTCAGACTCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCTGGCAACATGGTGATGGAACCTGGTCAGACACTGTCAGACTCT  838

seq1  GGTGCTTGCTCTGTCAGTTACAAGTATTAAAGCAGACAGCTCAAACAAGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTTGCTCTGTCAGTTACAAGTATTAAAGCAGACAGCTCAAACAAGG  888

seq1  GTAAGTACACCTAGTAGCTAGACCCTGACTTTTCTAATAAAGGAAACTAG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTACACCTAGTAGCTAGACCCTGACTTTTCTAATAAAGGAAACTAG  938

seq1  GGCTCCCTTTGAAAAGTGGCTGATCCTTCAGGGCCACAGATAAGAAGAAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCCCTTTGAAAAGTGGCTGATCCTTCAGGGCCACAGATAAGAAGAAA  988

seq1  AGGGATATTCAAGACAGCCCTTAGTGTATTGTAGTACAAGAAAGGAAGGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGATATTCAAGACAGCCCTTAGTGTATTGTAGTACAAGAAAGGAAGGC  1038

seq1  AGGACTCAAGGACTCACACATGTATACAGTGATGAGAGTGTCAGAGAGAC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCAAGGACTCACACATGTATACAGTGATGAGAGTGTCAGAGAGAC  1088

seq1  ATATGAGCCTACTAGAAGAATTC  1117
      |||||||||||||||||||||||
seq2  ATATGAGCCTACTAGAAGAATTC  1111

seq1: chr3_147845430_147846534
seq2: B6Ng01-092K02.g_68_1171

seq1  GAATTCAGATGAGGGTGGACCTTGGGCATCTGCTTATTCAGGTCTTTGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATGAGGGTGGACCTTGGGCATCTGCTTATTCAGGTCTTTGGC  50

seq1  AGATGGCTCTCACTTTATGTTCTGATTTGTATTTGTGGGAGGAGTAAGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGCTCTCACTTTATGTTCTGATTTGTATTTGTGGGAGGAGTAAGGG  100

seq1  AAAGAATAACATGTTATTGACGATTTGTTTTGGTTTACAATACAAACAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAATAACATGTTATTGACGATTTGTTTTGGTTTACAATACAAACAGA  150

seq1  GTGGAACGAATTTTGGTGAAGGCCTGGGAAGGCCTCAGAAATCACCTGTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGAACGAATTTTGGTGAAGGCCTGGGAAGGCCTCAGAAATCACCTGTT  200

seq1  ATTTATCAGTCTCCTGAATCAATACAACAGCTCCTATTAATGTCTTTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATCAGTCTCCTGAATCAATACAACAGCTCCTATTAATGTCTTTTAT  250

seq1  GCCCATATAATGTGTAACGAGATGATACTGAGTGCTTTCTATGCCGGCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCATATAATGTGTAACGAGATGATACTGAGTGCTTTCTATGCCGGCCA  300

seq1  ATCATTTCTGTTTCTTTAGGTAAATTTCCATTTTTATTGCATCTTTTGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCTGTTTCTTTAGGTAAATTTCCATTTTTATTGCATCTTTTGTG  350

seq1  TTTTTATGATGGTTAGAAATCTACAGGTTTTATTTCCTAGACTTTTTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATGATGGTTAGAAATCTACAGGTTTTATTTCCTAGACTTTTTCCA  400

seq1  AACTGTCTTTGCTTTTGCACTAAGACAGAGAGTAGTGGTCTTCCTTTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTCTTTGCTTTTGCACTAAGACAGAGAGTAGTGGTCTTCCTTTCTA  450

seq1  GCAGTTCAGGATCGTTATGGACAGCGGCAGAGCTGGGCTGACTCTAGGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTCAGGATCGTTATGGACAGCGGCAGAGCTGGGCTGACTCTAGGAC  500

seq1  AGCAGATAGAGGAATGCAGGGTGGACCAGGAGCTGCCTCCTCTGCGCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGATAGAGGAATGCAGGGTGGACCAGGAGCTGCCTCCTCTGCGCTGA  550

seq1  CGACATCATGGAACTCAAGAATCCGGAATGCCAGGCTTCTTCTCCCTTAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGACATCATGGAACTCAAGAATCCGGAATGCCAGGCTTCTTCTCCCTTAC  600

seq1  CACTGAGTGTCATGCTCAGGATTGATGACTTTTGGTTAACAGAGG-TTTT  649
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CACTGAGTGTCATGCTCAGGATTGATGACTTTTGGTTAACAGAGGTTTTT  650

seq1  TGTTAAAAATTATCATAGTTAAGCTTCAACTGGATTGGATTTAGAATCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAAAAATTATCATAGTTAAGCTTCAACTGGATTGGATTTAGAATCAC  700

seq1  TTAGGAGTCATACCTAGGATACCTCTATAGGGTTTTTATTGAGGA-GGCA  748
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  TTAGGAGTCATACCTAGGATACCTCTATAGGGTTTTTATTGAGGAGGGCA  750

seq1  ATACTCACCCTCAATCTGTTTTCACCTTGCTGT-GGGCTAGGGTGTTCTG  797
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  ATACTCACCCTCAATCTGTTTTCACCTTGCTGTGGGGCTAGGGTGTTCTG  800

seq1  CAGAAAGAAAGAAAAAAGGAGAAATGTAGATGAGCATTGGCATCCCTTTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGAAAGAAAAAAGGAGAAATGTAGATGAGCATTGGCATCCCTTTC  850

seq1  TGTGATTTCTAAAGACAGAAACCCAGTCGCCTCATCCTCTCGCCTCATCC  897
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TGTGATTTCTAAAGACAGAAACCCAGTCGCCTCATCCTCTCG-CTCATCC  899

seq1  TCTCGCCTCATCCTCTCGCCTCATCCTCTCGCCTCA-TCCTCTCGCCTCA  946
      ||||| |||||| ||||| ||||| |||||| |||| |||||||| ||||
seq2  TCTCGGCTCATCTTCTCG-CTCAT-CTCTCG-CTCATTCCTCTCG-CTCA  945

seq1  TCCTCTTACCCCAACAGCAAGAGCCGCTCTCACCAC-TCAGCCTTCCCAC  995
      | |||||||||||   |||||||||||||||||||| |||| ||||||||
seq2  T-CTCTTACCCCA--CGCAAGAGCCGCTCTCACCACTTCAG-CTTCCCAC  991

seq1  CACAGTGGATTACACCAAGCAATGCTGAGTCTAAAGAAAC-TCTTCCTAA  1044
      |||||| ||||||||| ||| ||||||| ||||||||||| |||||||||
seq2  CACAGT-GATTACACCCAGCCATGCTGATTCTAAAGAAACTTCTTCCTAA  1040

seq1  GTTGCTTTGG--AGAGATGTTTTGTTGCTGCAACT-AGAAAGGTACATGA  1091
      ||||||||||  ||| ||||||||||||||||||| ||||||| ||||||
seq2  GTTGCTTTGGGAAGAAATGTTTTGTTGCTGCAACTAAGAAAGG-ACATGA  1089

seq1  CTAGGTC-CTAAATC  1105
      || || | |||||||
seq2  CTTGGGCTCTAAATC  1104