BAC Information

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BAC

Clone NameB6Ng01-092L19
Chromosome6 (Build37)3 (Build37)
Map Location 149,091,269 - 149,092,24341,058,643 - 41,059,206
singlet/doubletsingletsinglet
Overlap gene4833442J19Rik
Upstream geneMlstd1, Ergic2, Tmtc1, 1110033J19Rik, EG622319, LOC100042984, LOC665372, Ipo8, Caprin2, EG665395, Tera, LOC667138, D030011O10Rik
Downstream geneC730024G19Rik, 2810474O19Rik, LOC665426, LOC622481, LOC665441, Bicd1, LOC667182, LOC100039850
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092L19.bB6Ng01-092L19.g
ACCDH904415DH904416
length9741,078
definitionDH904415|Mus musculus domesticus DNA, BAC clone: B6Ng01-092L19, 5' end.DH904416|Mus musculus domesticus DNA, BAC clone: B6Ng01-092L19, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(149,091,269 - 149,092,243)(41,058,643 - 41,059,206)
sequence
gaattcttatcattgtttcctttttccatggagatctgcctgcctctgcc
tcccaagtgctcagattaaaggccaggagtttactattgtgcccagcctg
atgtcattccagtaacataatttgagtacctacctagattggctttataa
cttcataaccaaactgccagtgctgggaagacatggtatcctaatacaca
gtaattcccatattactctgctgtaaaccttaaagctcatatggtagagt
gcttgccttgaatgcatgaagccctggatctgacccaagcaacaataaac
cttggagggaggaggaacactacaaatttgatgtctgtttggtctacata
gtgaattccattgcagcctgggctatggtataagtctatattttatttga
tggatatgctttgcctgcatgtgtataaacacactgtgtgtggtgtgtgt
gtgtgtctgctgcctgaaaaaagccagaggagggcaccagatcccctgga
actgaagttatgattgtgagctgcgtgtggatgctaggaaccgaacctgg
gtccactgcaagagcatcaggtgctctttaactgctgagccatttcttta
catgcaaggctatcctaagaccaaaacaaacaaaaagatataccttattt
catttcatgaacattgttataaaaatagtatgcctgtatatttgtgatta
tgaattactgaaaggatttcacaggaaaaaaaaaaagtgggcctggagag
atggctcagcggttaaggagcactcactgctcttccagaggtcctgagtt
caattcccagcaaccacatggtgactcacaaccatctgtaataggatctg
atccctctaatggtatattgaagacagaacagtactcacatacataaaat
aatacatcttaaaaaaaaaaaaaagccaggcagtggtggtgcctgctcat
taattccagcacttgggaggcaga
gaattctttgtttagctctgagccccattttttaatggggttatttgatt
tgctggagttcaccttcttgagttctttatatatattggatattagtccc
ctgtctgatttagggttggtaaagatcctttcccaatctgttggtggcct
tttgtcttattgatagtgtcttttgccttacagaagctttgcaattttat
gaggtcccatttgtcgattctcgatcttacaggacaaaccattgctgttc
tattcaggaatttttcccctgtgcccatgtcttcgaggcttttccccact
ttctcctctataagtttcagcgtctctgatttttatgtggagttccttga
tccacttagttttgaccttagtacaagagataagactggatctattcgaa
ttcttctatatgataactgccagttgtgccaacaccatttgttgaaaatg
ctgtcttttttctactggatggttttagctcccttgccaaagatcaagtg
accataggtgtgtgggttcatttctggatcttcaattctattccattggt
ctacttgtctgttgctataccagtaccatgcagtttttatcacaattgct
ctgtagtacagctttaggtcaggcatggtgattccaccagaggttctttt
atccttgagaagagtttttgctatcctaggttttttgttattccagatga
atttgcaaattgccttttctaattcgttgaagaattgagttggaattttg
atggggattgcattgaatctgtagattgcttttggcaagatagccatttt
tactatattgatcctgccaatccatgagcatgggagatctttccatcttt
tgagatcttcttggtttctttcttcagaacttgaagttcttataatacag
gtctttcactttattagttagagtcacaccaaggtatttatatatttgtg
actatgggaaggtgttgtttccctaattcttctcacctgtttatcttgtg
agagaaagccatgacttttgagttaatttatatccaggaccttacactga
agctgttatcactttaggagttctctgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr6_149091269_149092243
seq2: B6Ng01-092L19.b_45_1018

seq1  GAATTCTTATCATTGTTTCCTTTTTCCATGGAGATCTGCCTGCCTCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCATTGTTTCCTTTTTCCATGGAGATCTGCCTGCCTCTGCC  50

seq1  TCCCAAGTGCTCAGATTAAAGGCCAGGAGTTTACTATTGTGCCCAGCCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAAGTGCTCAGATTAAAGGCCAGGAGTTTACTATTGTGCCCAGCCTG  100

seq1  ATGTCATTCCAGTAACATAATTTGAGTACCTACCTAGATTGGCTTTATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATTCCAGTAACATAATTTGAGTACCTACCTAGATTGGCTTTATAA  150

seq1  CTTCATAACCAAACTGCCAGTGCTGGGAAGACATGGTATCCTAATACACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATAACCAAACTGCCAGTGCTGGGAAGACATGGTATCCTAATACACA  200

seq1  GTAATTCCCATATTACTCTGCTGTAAACCTTAAAGCTCATATGGTAGAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTCCCATATTACTCTGCTGTAAACCTTAAAGCTCATATGGTAGAGT  250

seq1  GCTTGCCTTGAATGCATGAAGCCCTGGATCTGACCCAAGCAACAATAAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTGCCTTGAATGCATGAAGCCCTGGATCTGACCCAAGCAACAATAAAC  300

seq1  CTTGGAGGGAGGAGGAACACTACAAATTTGATGTCTGTTTGGTCTACATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAGGGAGGAGGAACACTACAAATTTGATGTCTGTTTGGTCTACATA  350

seq1  GTGAATTCCATTGCAGCCTGGGCTATGGTATAAGTCTATATTTTATTTGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATTCCATTGCAGCCTGGGCTATGGTATAAGTCTATATTTTATTTGA  400

seq1  TGGATATGCTTTGCCTGCATGTGTATAAACACACTGTGTGTGGTGTGTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATATGCTTTGCCTGCATGTGTATAAACACACTGTGTGTGGTGTGTGT  450

seq1  GTGTGTCTGCTGCCTGAAAAAAGCCAGAGGAGGGCACCAGATCCCCTGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTCTGCTGCCTGAAAAAAGCCAGAGGAGGGCACCAGATCCCCTGGA  500

seq1  ACTGAAGTTATGATTGTGAGCTGCGTGTGGATGCTAGGAACCGAACCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAGTTATGATTGTGAGCTGCGTGTGGATGCTAGGAACCGAACCTGG  550

seq1  GTCCACTGCAAGAGCATCAGGTGCTCTTTAACTGCTGAGCCATTTCTTTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCACTGCAAGAGCATCAGGTGCTCTTTAACTGCTGAGCCATTTCTTTA  600

seq1  CATGCAAGGCTATCCTAAGACCAAAACAAACAAAAAGATATACCTTATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCAAGGCTATCCTAAGACCAAAACAAACAAAAAGATATACCTTATTT  650

seq1  CATTTCATGAACATTGTTATAAAAATAGTATGCCTGTATATTTGTGATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCATGAACATTGTTATAAAAATAGTATGCCTGTATATTTGTGATTA  700

seq1  TGAATTACTGAAAGGATTTCACAGG-AAAAAAAAAAGTGGGCCTGGAGAG  749
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TGAATTACTGAAAGGATTTCACAGGAAAAAAAAAAAGTGGGCCTGGAGAG  750

seq1  ATGGCTCAGCGGTT-AGGAGCACTCACTGCTCTTCCAGAGGTCCTGAGTT  798
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATGGCTCAGCGGTTAAGGAGCACTCACTGCTCTTCCAGAGGTCCTGAGTT  800

seq1  CAATTCCCAGCAACCACATGGTGACTCACAACCATCTGTAATAGGATCTG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTCCCAGCAACCACATGGTGACTCACAACCATCTGTAATAGGATCTG  850

seq1  ATACCCTCTAATGGTATATCTGAAGACAGTAACAGTACTCACATACATAA  898
      || |||||||||||||||| ||||||||| ||||||||||||||||||||
seq2  AT-CCCTCTAATGGTATAT-TGAAGACAG-AACAGTACTCACATACATAA  897

seq1  AATAAATACATCTTAAAAAAAAAAAAAAGCCAGGCAGTGGTGGTGCCTGC  948
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAT-AATACATCTTAAAAAAAAAAAAAAGCCAGGCAGTGGTGGTGCCTGC  946

seq1  -CTTTAATCCCAGCACTTGGGAGGCAGA  975
       | ||||| |||||||||||||||||||
seq2  TCATTAATTCCAGCACTTGGGAGGCAGA  974

seq1: chr3_41058643_41059206
seq2: B6Ng01-092L19.g_602_1147 (reverse)

seq1  CCAGAGAACTCCTAAGCCTGATAAACAGCTTCGGTG-AAGTAGCTGGATA  49
      |||||||||||||||   |||| ||||||||| ||| |||   |||||||
seq2  CCAGAGAACTCCTAA-AGTGAT-AACAGCTTCAGTGTAAGGTCCTGGATA  48

seq1  TAAAATTAACTCAAACAAGTCAATGGCCTTTCTCTACACAAAGAATAAAC  99
      | ||||||||||||  ||||| |||| |||||||| |||||   ||||||
seq2  T-AAATTAACTCAA--AAGTC-ATGG-CTTTCTCT-CACAA--GATAAAC  90

seq1  AGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGTCACAAAT  149
      ||| ||||||   |||||||||||||||| ||||| | ||||||||||||
seq2  AGG-TGAGAA--GAATTAGGGAAACAACA-CCTTC-CCATAGTCACAAAT  135

seq1  AATATAAAATATCTTGGCATGACTCTAACTAAGGAAGTGAAAGATCTGTA  199
       |||| ||||| |||||  |||||||||||||  |||||||||| |||||
seq2  -ATAT-AAATACCTTGGTGTGACTCTAACTAATAAAGTGAAAGACCTGTA  183

seq1  TGACAAGAACTTCAAGTCTCTGAAGAAAGAAATTAAAGAAGATCTCAGAA  249
      | | ||||||||||||| ||||||||||||||   |||||||||||| ||
seq2  TTATAAGAACTTCAAGT-TCTGAAGAAAGAAA-CCAAGAAGATCTCAAAA  231

seq1  GATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAACATTGTAAAA  299
      |||||||||||||||||||||||||||||||||||||||| || ||||||
seq2  GATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCAATATAGTAAAA  281

seq1  ATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGCAATCCCCATCAA  331

seq1  AATTCCAACTCAATTCTTCAACGAATTTGAAAGAGCAATCTGCAAATTCA  399
      ||||||||||||||||||||||||||| ||||  ||||| ||||||||||
seq2  AATTCCAACTCAATTCTTCAACGAATTAGAAAAGGCAATTTGCAAATTCA  381

seq1  TCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTTCTCAAGGATAAA  431

seq1  AGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGC  499
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  AGAACCTCTGGTGGAATCACCATGCCTGACCTAAAGCTGTACTACAGAGC  481

seq1  AATTGTGATAAAAACTGCATGGTACTGGTATAGTGACAGACAAGCAGACC  549
      |||||||||||||||||||||||||||||||||  ||||||||| |||||
seq2  AATTGTGATAAAAACTGCATGGTACTGGTATAGCAACAGACAAGTAGACC  531

seq1  AATGGAATAGAATTG  564
      |||||||||||||||
seq2  AATGGAATAGAATTG  546