BAC Information

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BAC

Clone NameB6Ng01-092M06
Chromosome3 (Build37)
Map Location 53,944,324 - 54,126,035
singlet/doubletdoublet
Overlap geneTrpc4
Upstream geneLhfp, LOC666413, 8030451K01Rik, 2810046L04Rik, Stoml3, Frem2, Ppia-ps3_416.1, LOC621155, Ufm1, EG666444, LOC100039937
Downstream genePostn, LOC100039951, LOC434807, B020017C02Rik, D3Ertd300e, Exosc8, Alg5, Smad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092M06.bB6Ng01-092M06.g
ACCDH904435DH904436
length1,0901,134
definitionDH904435|Mus musculus domesticus DNA, BAC clone: B6Ng01-092M06, 5' end.DH904436|Mus musculus domesticus DNA, BAC clone: B6Ng01-092M06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,124,926 - 54,126,035)(53,944,324 - 53,945,472)
sequence
gaattctatctgccaaaggtacaaagaatctgaagcctccatccaaacat
ccagtagagagttgaaggcttagctattgcttagatcttggtttaagctt
caactcagccactgaacgtcaagacaaatacagagagtctccataaatct
cacaagccttttcttcttcagttgtctatggaaaatttatttgagacact
ttaaatatttaagcgtagaattcaaataaataacacatgccaacctgcct
gagctaaacgctgcacaggacattaaaaaaatcgctagaatttgtagaat
tctaaggggaatgtcagagaagtacattgcaaatttgaacttactggcat
ttctatttaaaacattaaaaaaattaagaatttattttcagagtgatgat
ctatattcagtgatgtggtcctttggaaacctgggccgctgtaaatgtat
tcacggagattttccacgtggtttttgtcaggctggttttgagggtggag
ggcaggcatcactgtgttgattacacagagcatggtgcccagggatgttg
tgcttggcaagggatcatgggactggacagctactcactggctgaattcc
atgtctatcaaggggtagaacatgtagaagcacacatccatgccattact
gtcaggttacctctacatatgctagaaaacagactttgccttttgagaat
agtgttttgctacccttgactttccatttatctattttattcctccccta
atattactcagagaatgtggtggcgcgccttcaggtacttgatcactcaa
gtgtgtcagttgctcttcatgtcttggcaagaaatgacctttttattttc
tttctctattttgcactgtttaatcaccagccagtaaataaaatataatt
taagaaatttggtatacacataggcaactcataaacatacattttctttc
agatgataacattttgaaaatattcatcatctacaaaaaattcacctatc
atttttaatagcagtttcttatgaaactatacagatttatttctacagag
atgccagattcacagctgtacacaggaggaatccccttta
gaattcatgagaagattgctactctatactaaatgtccacagtgtgtgag
gatcaggtacaaaggagaattaatgaaaaagccaagccaccttaagaagg
ttcaatgtggatctcctgtgctcatgagttaaagacgataagatgcctgg
gtatgcaattgggattaaagacattcaatagactttgtcagagataaaag
ccttagaaaaagacaggagagatggctcagcggttgagagcattggctgc
tcttccagaggtcctgagttcagtccccagcaaccacatggtagctcaca
tcatcggtaatgtgatctaatgccctttattggcgtgtagctgtccatac
agatagaccattcatatagtcagtctgacctgagtagagacttaactttc
tgggtgagcaggttacttatagttaggaaagagggacttccccttaaggt
gggctcaccgtaagatataataaagaggtaggtagagtaattcttccttt
aatgaggtactgtacttccccttcccagaattcctgccccttgctgcccc
attagggtctccaggaggttggctgtgtctgtacatttctgttactgttt
ttcttctttcctgttccttttggatgctggttacaatctaagtaaacttt
ttctgatacgttgagcttccttatgtaatgccaaaaattaacctgtaagt
cctacctccccaaggaccaggaaacttcctggaatgctgggaactgtagt
tcttttattccacggtcgattgttctcccaaatccatactaaaagccaac
tgaaaggagtggaagaggcagaggttgagcagggaggtggagggagctca
cagtgaacctgaggagtgtataactctccttttgttttctcattttaatt
taaaatacattaaataatatgaataaataaataataattcttacacgttc
tgaaaatccaccctgcctttagaatggttctaatatcacaaagtttcaac
tattttgtgatctgtactgtcccttggtcaccaagcacttagattgacaa
atatgttttgtgtatcaccagttttattctctctcctttcatttcaaagt
ggcattaagccaacaagttttgaatgatctgggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_54124926_54126035
seq2: B6Ng01-092M06.b_47_1136 (reverse)

seq1  TAAAGGGGATTCCTCCCTGTGTACCAGCTGTGAAATCCTGGCATCTTCTG  50
      |||||||||||||| |||||||| ||||||||||   |||||||| ||||
seq2  TAAAGGGGATTCCT-CCTGTGTA-CAGCTGTGAA--TCTGGCATC-TCTG  45

seq1  TAGAAATAAATCTGTATTAGTTTTCATAAGAAAACTGGCTATTTAAAAAA  100
      |||||||||||||||| ||| ||||||||| ||||| ||||||  |||||
seq2  TAGAAATAAATCTGTA-TAG-TTTCATAAG-AAACT-GCTATT--AAAAA  89

seq1  TGATA-GTGAATTTTTTTGTAAGATGATGAATTATTTTTCAAAATGTTTA  149
      ||||| ||||| |||||||| |||||||||||   ||||||||||| |||
seq2  TGATAGGTGAA-TTTTTTGT-AGATGATGAAT--ATTTTCAAAATG-TTA  134

seq1  TCATCCTGAAAAGAAAATGTATGTTTTATGAGTTGCCTATGTGTATACCA  199
      |||| ||| |||||||||||||| ||||||||||||||||||||||||||
seq2  TCAT-CTG-AAAGAAAATGTATG-TTTATGAGTTGCCTATGTGTATACCA  181

seq1  AATTTTCTTAAATTATATTTTATTTACTGGCTGGTGATTAAACAGTGCAA  249
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AA-TTTCTTAAATTATATTTTATTTACTGGCTGGTGATTAAACAGTGCAA  230

seq1  AATAGAGAAAGAAAATAAAAAGGTCATTTCTTGCCAAGACATGAAGAGCA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAGAAAGAAAATAAAAAGGTCATTTCTTGCCAAGACATGAAGAGCA  280

seq1  ACCTGACACACTTGAGTGATCAAGTACCTGAAGGCGCGCCACCACATTCT  349
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  A-CTGACACACTTGAGTGATCAAGTACCTGAAGGCGCGCCACCACATTCT  329

seq1  CTGAGTAATATTAGGGGAGGAATAAAATAGATAAATGGAAAGTCAAGGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGTAATATTAGGGGAGGAATAAAATAGATAAATGGAAAGTCAAGGGT  379

seq1  AGCAAAACACTATTCTCAAAAGGCAAAGTCTGTTTTCTAGCATATGTAGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAAACACTATTCTCAAAAGGCAAAGTCTGTTTTCTAGCATATGTAGA  429

seq1  GGTAACCTGACAGTAATGGCATGGATGTGTGCTTCTACATGTTCTACCCC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACCTGACAGTAATGGCATGGATGTGTGCTTCTACATGTTCTACCCC  479

seq1  TTGATAGACATGGAATTCAGCCAGTGAGTAGCTGTCCAGTCCCATGATCC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATAGACATGGAATTCAGCCAGTGAGTAGCTGTCCAGTCCCATGATCC  529

seq1  CTTGCCAAGCACAACATCCCTGGGCACCATGCTCTGTGTAATCAACACAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCAAGCACAACATCCCTGGGCACCATGCTCTGTGTAATCAACACAG  579

seq1  TGATGCCTGCCCTCCACCCTCAAAACCAGCCTGACAAAAACCACGTGGAA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGCCTGCCCTCCACCCTCAAAACCAGCCTGACAAAAACCACGTGGAA  629

seq1  AATCTCCGTGAATACATTTACAGCGGCCCAGGTTTCCAAAGGACCACATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCGTGAATACATTTACAGCGGCCCAGGTTTCCAAAGGACCACATC  679

seq1  ACTGAATATAGATCATCACTCTGAAAATAAATTCTTAATTTTTTTAATGT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAATATAGATCATCACTCTGAAAATAAATTCTTAATTTTTTTAATGT  729

seq1  TTTAAATAGAAATGCCAGTAAGTTCAAATTTGCAATGTACTTCTCTGACA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATAGAAATGCCAGTAAGTTCAAATTTGCAATGTACTTCTCTGACA  779

seq1  TTCCCCTTAGAATTCTACAAATTCTAGCGATTTTTTTAATGTCCTGTGCA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCTTAGAATTCTACAAATTCTAGCGATTTTTTTAATGTCCTGTGCA  829

seq1  GCGTTTAGCTCAGGCAGGTTGGCATGTGTTATTTATTTGAATTCTACGCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGTTTAGCTCAGGCAGGTTGGCATGTGTTATTTATTTGAATTCTACGCT  879

seq1  TAAATATTTAAAGTGTCTCAAATAAATTTTCCATAGACAACTGAAGAAGA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATTTAAAGTGTCTCAAATAAATTTTCCATAGACAACTGAAGAAGA  929

seq1  AAAGGCTTGTGAGATTTATGGAGACTCTCTGTATTTGTCTTGACGTTCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCTTGTGAGATTTATGGAGACTCTCTGTATTTGTCTTGACGTTCAG  979

seq1  TGGCTGAGTTGAAGCTTAAACCAAGATCTAAGCAATAGCTAAGCCTTCAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGAGTTGAAGCTTAAACCAAGATCTAAGCAATAGCTAAGCCTTCAA  1029

seq1  CTCTCTACTGGATGTTTGGATGGAGGCTTCAGATTCTTTGTACCTTTGGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTACTGGATGTTTGGATGGAGGCTTCAGATTCTTTGTACCTTTGGC  1079

seq1  AGATAGAATTC  1110
      |||||||||||
seq2  AGATAGAATTC  1090

seq1: chr3_53944324_53945472
seq2: B6Ng01-092M06.g_72_1205

seq1  GAATTCATGAGAAGATTGCTACTCTATACTAAATGTCCACAGTGTGTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGAAGATTGCTACTCTATACTAAATGTCCACAGTGTGTGAG  50

seq1  GATCAGGTACAAAGGAGAATTAATGAAAAAGCCAAGCCACCTTAAGAAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGGTACAAAGGAGAATTAATGAAAAAGCCAAGCCACCTTAAGAAGG  100

seq1  TTCAATGTGGATCTCCTGTGCTCATGAGTTAAAGACGATAAGATGCCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAATGTGGATCTCCTGTGCTCATGAGTTAAAGACGATAAGATGCCTGG  150

seq1  GTATGCAATTGGGATTAAAGACATTCAATAGACTTTGTCAGAGATAAAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCAATTGGGATTAAAGACATTCAATAGACTTTGTCAGAGATAAAAG  200

seq1  CCTTAGAAAAAGACAGGAGAGATGGCTCAGCGGTTGAGAGCATTGGCTGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAAAAAGACAGGAGAGATGGCTCAGCGGTTGAGAGCATTGGCTGC  250

seq1  TCTTCCAGAGGTCCTGAGTTCAGTCCCCAGCAACCACATGGTAGCTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCAGAGGTCCTGAGTTCAGTCCCCAGCAACCACATGGTAGCTCACA  300

seq1  TCATCGGTAATGTGATCTAATGCCCTTTATTGGCGTGTAGCTGTCCATAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGGTAATGTGATCTAATGCCCTTTATTGGCGTGTAGCTGTCCATAC  350

seq1  AGATAGACCATTCATATAGTCAGTCTGACCTGAGTAGAGACTTAACTTTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGACCATTCATATAGTCAGTCTGACCTGAGTAGAGACTTAACTTTC  400

seq1  TGGGTGAGCAGGTTACTTATAGTTAGGAAAGAGGGACTTCCCCTTAAGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGAGCAGGTTACTTATAGTTAGGAAAGAGGGACTTCCCCTTAAGGT  450

seq1  GGGCTCACCGTAAGATATAATAAAGAGGTAGGTAGAGTAATTCTTCCTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCACCGTAAGATATAATAAAGAGGTAGGTAGAGTAATTCTTCCTTT  500

seq1  AATGAGGTACTGTACTTCCCCTTCCCAGAATTCCTGCCCCTTGCTGCCCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGGTACTGTACTTCCCCTTCCCAGAATTCCTGCCCCTTGCTGCCCC  550

seq1  ATTAGGGTCTCCAGGAGGTTGGCTGTGTCTGTACATTTCTGTTACTGTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGTCTCCAGGAGGTTGGCTGTGTCTGTACATTTCTGTTACTGTTT  600

seq1  TTCTTCTTTCCTGTTCCTTTTGGATGCTGGTTACAATCTAAGTAAACTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTTCCTGTTCCTTTTGGATGCTGGTTACAATCTAAGTAAACTTT  650

seq1  TTCTGATACGTTGAGCTTCCTTATGTAATGCCAAAAATTAACCTGTAAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATACGTTGAGCTTCCTTATGTAATGCCAAAAATTAACCTGTAAGT  700

seq1  CCTACCTCCCCAAGGACCAGGAAACTTCCTGGAATGCTGGGAACTGTAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTACCTCCCCAAGGACCAGGAAACTTCCTGGAATGCTGGGAACTGTAGT  750

seq1  TCTTTTATTCCACGGTCGATTGTTCTCCCAAATCCATACTAAAAGCCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTATTCCACGGTCGATTGTTCTCCCAAATCCATACTAAAAGCCAAC  800

seq1  TG-AAGGAGTGGAAGAGGCAGAGGTTGAGCAGGGAGGTGGAGGGAGCTCA  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGGAGTGGAAGAGGCAGAGGTTGAGCAGGGAGGTGGAGGGAGCTCA  850

seq1  CAGTGAACCTGAGGAGTGTATAACTCTCCTTTTGTTTTTCTCATTTTAAT  899
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CAGTGAACCTGAGGAGTGTATAACTCTCCTTTTG-TTTTCTCATTTTAAT  899

seq1  TTAAAATACATTAAATAAATATGAATAAATAAATAAATAAATTCTTACAA  949
      |||||||||||||||| |||||||||||||||||||   ||||||||| |
seq2  TTAAAATACATTAAAT-AATATGAATAAATAAATAA--TAATTCTTAC-A  945

seq1  CGTTCTGAAAATCCACCCTGCCTATAGAATGGTTCTAAATATCACAAAGT  999
      ||||||||||||||||||||||| |||||||||||| |||||||||||| 
seq2  CGTTCTGAAAATCCACCCTGCCTTTAGAATGGTTCT-AATATCACAAAG-  993

seq1  TTTCACCTATTTTGTGATCTGGTACTGTCCCCTGGTCACCAAGCAACTTA  1049
      ||||| |||||||||||||| |||||||||| |||||||||||| |||||
seq2  TTTCAACTATTTTGTGATCT-GTACTGTCCCTTGGTCACCAAGC-ACTTA  1041

seq1  GATTGACACATATGTCTTGTGTATCACCAGTTTTATTCTCTCTTCCTTCA  1099
      |||||||| |||||| ||||||||||||||||||||||||||| | ||||
seq2  GATTGACAAATATGTTTTGTGTATCACCAGTTTTATTCTCTCTCCTTTCA  1091

seq1  TTTTCAAAAGGTTGGCATCTAAGCCAACAAGTTTTGACATGATCCTGGGT  1149
       |||||||    |||||| |||||||||||||||||| ||||| ||||||
seq2  -TTTCAAA---GTGGCAT-TAAGCCAACAAGTTTTGA-ATGAT-CTGGGT  1134