BAC Information

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BAC

Clone NameB6Ng01-092O13
Chromosome3 (Build37)
Map Location 101,270,417 - 101,447,180
singlet/doubletdoublet
Overlap geneLOC100043032, Atp1a1, LOC100043036
Upstream gene4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn, LOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3
Downstream geneBC037703, Slc22a15, Nhlh2, LOC100043047, Casq2, Vangl1, EG433633, Ngfb
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-092O13.bB6Ng01-092O13.g
ACCDH904539DH904540
length1,172853
definitionDH904539|Mus musculus domesticus DNA, BAC clone: B6Ng01-092O13, 5' end.DH904540|Mus musculus domesticus DNA, BAC clone: B6Ng01-092O13, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,445,994 - 101,447,180)(101,270,417 - 101,271,271)
sequence
gaattcctggcccctttctcctcattttccagtatctccaggccattccc
cagcagtcattaggtatgtgaaccagtctggtgtgtagttgtttttacta
aagtgtgacaatctttcagagtgaaacccacatttagcagtgtttaaagc
tcccattacacagccagtgggatacatgtctagatcactaaacagttcgt
cctaggcccttcctgccttttctcctctataagttagcttttccattcct
tgtgtttctccttttaacacagtatccacaaatgagtgtcaaagcctttg
tccactgaaagaaagaaaacctctgtcttcccagattccagttctctcct
ggagcatggatgggatttttttcttggcactggaatgtctgctgcagcag
gaatcttcaatgggatattagctggaacctcttctatgccgaaactctac
cctttcaacccttcatcatgtgattagaatctcaagtcaacaataactga
caaccaggctgagacagtgagaagggacaatgaggcctcctccttctgag
caaggaaggtgaagaggaggcctccaggctgatacacatactggaaagta
gccagagatggatttatatgggggcgtcaccatagcacacaaacagatgg
tcctccaggggccagccatgttgcctgcagagtctccattgtcgccttgg
acaggaagtgtgttggctccaggaatcacatgttcaaggtcccataacct
tcctgggcagcctgtgaccaacaactcctggagttggttgataaaggcct
ggccttcttcgcctagactctaggcaactctagaataatgtttctgcttc
agacagagactgcactgtggccaagctccctcctctccagtatccactgg
tgcacatctcactgcctcacaagcttttcccagcacatgcctgcttgata
atcttcatcttgggcatggtttcccagtaacatcagctatcccgcaagta
gctgagaatgcagtctgctccatttcagtgtctgcagctgattcataaga
ctgtgaagttcaaggcctcaaccaaatgaacaatgtggtaggaagccttc
tgtgcatgctcagacccctaaggaccgtgacctctacctttcctgcctgc
tggataaatggaatggctgact
gaattccactccagtctctctcgatgaacaaatgggtttattagggtcac
acacagtgtagatgagggcttcctggaacatgggggactcagaagcaagt
gcatcaccacaaagcttaccttgccttgaaggaggatggaggagagatgc
attcgtgtgccctgagcctctttcctgctaagaagagatgtttccagtta
ggggaaatggctaggggacggtaggagagggctttacaggaatcttagag
aaggtttcaagacaatagagtgctgggctgaggatactttaatgttcctt
ccatttaaaactaaactcatgtcaggacccccaaagatgggcttgcggtg
tcactggacctctttatttgttcctcctccagtgtgactgcattgaatcc
atctccctttactttttattattttaatttccttctttccttcctgccct
cttcattactatgttgggatgggtgtctgaagtcgggttttttgttgttg
ttgttgttgttgtttgcttgtttgtttgaatttccagaccctgaccttgt
gccctaaaagcttctgtaatggtgtctccttgaattcatgaatccattcg
caagtcatctcagccagcaaacctgtgtacagggtctgtctgtcctgcat
agtccgtaaatgaagatttgcagctgagtatcgtggtcccattagaggtg
tgtcccctggaggcctaacctgcctccccaaaaacctgaaagcggaatga
ttactagactgaactctgttggaccgagtcgtggaccttgggctcctgta
catcttattatgaactgaataagttacctaattctgtgtctttcggtatc
tta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_101445994_101447180
seq2: B6Ng01-092O13.b_49_1220 (reverse)

seq1  AGTCAGCCAAGTGCAATTTATCCCCAGCAGGCAGGAAAAGGTGAGGGTCA  50
      |||||||||  | | ||||||  |||||||||||| ||||||   |||||
seq2  AGTCAGCCA--TTCCATTTAT--CCAGCAGGCAGG-AAAGGTAGAGGTCA  45

seq1  GGGTCCCCTAGGGGTACTGAGCATGCCCACAGAAGCCTTCCTCACCCACT  100
       ||| || ||||||| |||||||||  |||||||| ||||||  | || |
seq2  CGGT-CCTTAGGGGT-CTGAGCATG--CACAGAAGGCTTCCTACCACATT  91

seq1  TGTCACTTGGTTGGGGCCTGGAACTTCACAGTCCTTATGAATCAGCTGCA  150
        ||| ||||||| ||||| |||||||||||| |||||||||||||||||
seq2  GTTCATTTGGTTGAGGCCTTGAACTTCACAGT-CTTATGAATCAGCTGCA  140

seq1  GACACTGAAATGGGGCAGACCTGCATTTCTCAGCTACTTGCGGGATAGCC  200
      ||||||||||||| ||||| ||||| |||||||||||||||||||||| |
seq2  GACACTGAAATGGAGCAGA-CTGCA-TTCTCAGCTACTTGCGGGATAG-C  187

seq1  TGATGTTACCTGGGAAACCAATGCCCAAGATGAAGATTATCAAGCAGGCA  250
      |||||||| |||||||||| ||||||||||||||||||||||||||||||
seq2  TGATGTTA-CTGGGAAACC-ATGCCCAAGATGAAGATTATCAAGCAGGCA  235

seq1  TGTGCTGGGAAGAGCTTGTGAGGCAGTGAGATGTGCACCAGTGGATACTG  300
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  TGTGCTGGGAAAAGCTTGTGAGGCAGTGAGATGTGCACCAGTGGATACTG  285

seq1  GAGAGGAGGGAGCTTGGCCACAGTGCAGTCTCTGTCTGAAGCAGAAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGGGAGCTTGGCCACAGTGCAGTCTCTGTCTGAAGCAGAAACAT  335

seq1  TATTCTAGAGTTGCCTAGAGTCTAGGCGAAGAAGGCCAGGCCTTTATCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTAGAGTTGCCTAGAGTCTAGGCGAAGAAGGCCAGGCCTTTATCAA  385

seq1  CCAACTCCAGGAGTTGTTGGTCACAGGCTGCCCAGGAAGGTTATGGGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTCCAGGAGTTGTTGGTCACAGGCTGCCCAGGAAGGTTATGGGACC  435

seq1  TTGAACATGTGATTCCTGGAGCCAACACACTTCCTGTCCAAGGCGACAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACATGTGATTCCTGGAGCCAACACACTTCCTGTCCAAGGCGACAAT  485

seq1  GGAGACTCTGCAGGCAACATGGCTGGCCCCTGGAGGACCATCTGTTTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACTCTGCAGGCAACATGGCTGGCCCCTGGAGGACCATCTGTTTGTG  535

seq1  TGCTATGGTGACGCCCCCATATAAATCCATCTCTGGCTACTTTCCAGTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTATGGTGACGCCCCCATATAAATCCATCTCTGGCTACTTTCCAGTAT  585

seq1  GTGTATCAGCCTGGAGGCCTCCTCTTCACCTTCCTTGCTCAGAAGGAGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATCAGCCTGGAGGCCTCCTCTTCACCTTCCTTGCTCAGAAGGAGGA  635

seq1  GGCCTCATTGTCCCTTCTCACTGTCTCAGCCTGGTTGTCAGTTATTGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTCATTGTCCCTTCTCACTGTCTCAGCCTGGTTGTCAGTTATTGTTG  685

seq1  ACTTGAGATTCTAATCACATGATGAAGGGTTGAAAGGGTAGAGTTTCGGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGAGATTCTAATCACATGATGAAGGGTTGAAAGGGTAGAGTTTCGGC  735

seq1  ATAGAAGAGGTTCCAGCTAATATCCCATTGAAGATTCCTGCTGCAGCAGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAGAGGTTCCAGCTAATATCCCATTGAAGATTCCTGCTGCAGCAGA  785

seq1  CATTCCAGTGCCAAGAAAAAAATCCCATCCATGCTCCAGGAGAGAACTGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCAGTGCCAAGAAAAAAATCCCATCCATGCTCCAGGAGAGAACTGG  835

seq1  AATCTGGGAAGACAGAGGTTTTCTTTCTTTCAGTGGACAAAGGCTTTGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTGGGAAGACAGAGGTTTTCTTTCTTTCAGTGGACAAAGGCTTTGAC  885

seq1  ACTCATTTGTGGATACTGTGTTAAAAGGAGAAACACAAGGAATGGAAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCATTTGTGGATACTGTGTTAAAAGGAGAAACACAAGGAATGGAAAAG  935

seq1  CTAACTTATAGAGGAGAAAAGGCAGGAAGGGCCTAGGACGAACTGTTTAG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTTATAGAGGAGAAAAGGCAGGAAGGGCCTAGGACGAACTGTTTAG  985

seq1  TGATCTAGACATGTATCCCACTGGCTGTGTAATGGGAGCTTTAAACACTG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTAGACATGTATCCCACTGGCTGTGTAATGGGAGCTTTAAACACTG  1035

seq1  CTAAATGTGGGTTTCACTCTGAAAGATTGTCACACTTTAGTAAAAACAAC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGTGGGTTTCACTCTGAAAGATTGTCACACTTTAGTAAAAACAAC  1085

seq1  TACACACCAGACTGGTTCACATACCTAATGACTGCTGGGGAATGGCCTGG  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACACCAGACTGGTTCACATACCTAATGACTGCTGGGGAATGGCCTGG  1135

seq1  AGATACTGGAAAATGAGGAGAAAGGGGCCAGGAATTC  1187
      |||||||||||||||||||||||||||||||||||||
seq2  AGATACTGGAAAATGAGGAGAAAGGGGCCAGGAATTC  1172

seq1: chr3_101270417_101271271
seq2: B6Ng01-092O13.g_70_921

seq1  GAATTCCACTCCAGTCTCTCTCGATGAACAAATGGGTTTATTAGGGTCAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTCCAGTCTCTCTCGATGAACAAATGGGTTTATTAGGGTCAC  50

seq1  ACACAGTGTAGATGAGGGCTTCCTGGAACATGGGGGACTCAGAAGCAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAGTGTAGATGAGGGCTTCCTGGAACATGGGGGACTCAGAAGCAAGT  100

seq1  GCATCACCACAAAGCTTACCTTGCCTTGAAGGAGGATGGAGGAGAGATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCACCACAAAGCTTACCTTGCCTTGAAGGAGGATGGAGGAGAGATGC  150

seq1  ATTCGTGTGCCCTGAGCCTCTTTCCTGCTAAGAAGAGATGTTTCCAGTTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCGTGTGCCCTGAGCCTCTTTCCTGCTAAGAAGAGATGTTTCCAGTTA  200

seq1  GGGGAAATGGCTAGGGGACGGTAGGAGAGGGCTTTACAGGAATCTTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAAATGGCTAGGGGACGGTAGGAGAGGGCTTTACAGGAATCTTAGAG  250

seq1  AAGGTTTCAAGACAATAGAGTGCTGGGCTGAGGATACTTTAATGTTCCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTTCAAGACAATAGAGTGCTGGGCTGAGGATACTTTAATGTTCCTT  300

seq1  CCATTTAAAACTAAACTCATGTCAGGACCCCCAAAGATGGGCTTGCGGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTAAAACTAAACTCATGTCAGGACCCCCAAAGATGGGCTTGCGGTG  350

seq1  TCACTGGACCTCTTTATTTGTTCCTCCTCCAGTGTGACTGCATTGAATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTGGACCTCTTTATTTGTTCCTCCTCCAGTGTGACTGCATTGAATCC  400

seq1  ATCTCCCTTTACTTTTTATTATTTTAATTTCCTTCTTTCCTTCCTGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCCCTTTACTTTTTATTATTTTAATTTCCTTCTTTCCTTCCTGCCCT  450

seq1  CTTCATTACTATGTTGGGATGGGTGTCTGAAGTCGGGTTTTTTGTTGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTACTATGTTGGGATGGGTGTCTGAAGTCGGGTTTTTTGTTGTTG  500

seq1  TTGTTGTTGTTGTTTGCTTGTTTGTTTGAATTTCCAGACCCTGACCTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGTTTGCTTGTTTGTTTGAATTTCCAGACCCTGACCTTGT  550

seq1  GCCCTAAAAGCTTCTGTAATGGTGTCTCCTTGAATTCATGAATCCATTCG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTAAAAGCTTCTGTAATGGTGTCTCCTTGAATTCATGAATCCATTCG  600

seq1  CAAGTCATCTCAGCCAGCAAACCTGTGTACAGGGTCTGTCTGTCCTGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCATCTCAGCCAGCAAACCTGTGTACAGGGTCTGTCTGTCCTGCAT  650

seq1  AG-CCGTAAATGAAGATTTGCAGCTGAGTATCGTGGTCCCATTAGAGGTG  699
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCGTAAATGAAGATTTGCAGCTGAGTATCGTGGTCCCATTAGAGGTG  700

seq1  TGTCCCCTGGAGGCCTAGCCTGCCTCCCCAGAAACCTGAAAGCGGAATGA  749
      ||||||||||||||||| |||||||||||| |||||||||||||||||||
seq2  TGTCCCCTGGAGGCCTAACCTGCCTCCCCAAAAACCTGAAAGCGGAATGA  750

seq1  TGACAAGACCGAACTCTAGTTGGACCGAGTCGTGGACCTTGGCTCCCTGT  799
      | || |||| ||||||| ||||||||||||||||||||||||   |||||
seq2  TTACTAGACTGAACTCT-GTTGGACCGAGTCGTGGACCTTGGGCTCCTGT  799

seq1  ACATCTTAGTCATGAACTTGAATAAGTTACCTAACTTCTGTGTCCTTCGG  849
      |||||||| | |||||| |||||||||||||||| ||||||||| |||||
seq2  ACATCTTA-TTATGAAC-TGAATAAGTTACCTAA-TTCTGTGTCTTTCGG  846

seq1  TATCTT  855
      ||||||
seq2  TATCTT  852