BAC Information

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BAC

Clone NameB6Ng01-093D05
Chromosome3 (Build37)
Map Location 139,539,043 - 139,742,812
singlet/doubletdoublet
Overlap genenone
Upstream geneTspan5, Rap1gds1, EG229879, B930007M17Rik, LOC100039840
Downstream geneLOC229883, LOC621343, 4930590L14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093D05.bB6Ng01-093D05.g
ACCDH904752DH904753
length1,1381,085
definitionDH904752|Mus musculus domesticus DNA, BAC clone: B6Ng01-093D05, 5' end.DH904753|Mus musculus domesticus DNA, BAC clone: B6Ng01-093D05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,539,043 - 139,540,194)(139,741,718 - 139,742,812)
sequence
gaattcaatgaaacagctctcttagatgatcttagctcatggacatacct
ttattcggagtgggcttgtccacatacactttatttggggtgagcccaga
gtatttatggaccttggagagtggaaaggtaaatagaaatagagttttca
gggtaaatagaaaaacattgggtagagtttaaagttctgtgaatgcctca
tttgtatgaaaaggcattccaggaactctgcattgtagctgctggaggtc
tgccaaggactactcagccttcctcaggtagaggatgctgggaggttaga
gaaggggcagccttctgggtaaagagagtccgtcatgttgcactgagctc
agagaaactatctagtcatggtagactttgaccttaattagcagagtatc
cccacacctacattttatttatactttctgaacccaatgccagcaatgga
gctacagtttgacccactttctgtcttttcttaaggaaaatctgttgtaa
aacaccaaaaaacaaaaaaaaaaaacaaaaaaaacaaaaaagctagatct
aagagatagactgtaggaaatacatgttggctctatattttcaggaccca
aagagtcaaccatgcagcaaccactcagatgttgggtctaagaaaatttg
cttcctacagagaatcttttctcagtgaatgtgagctcataaacccacat
gtactccttcctactgctgtaggtctgaaaattcatctcggcttcagagt
ttcagctagggtcaagttgagctttatagacaaaagctcgtagcttgtat
tacacctttctccctcctttggtttcttgccacagaattccaattcctga
gtactctccttcattcactatctgaatgttcatgtgttcatgtttatctc
tgctttatgggtcccatcctcgaaatgcaatgtcttcaaattctctgtgt
cctaaaccatctccccacagaggttaaatatttctacccttcttctattc
attatccttgcccagggtgctaattaacactattttttcttttttattaa
cactattggactacaatttttgttgagaattttgtatgtggccaagcaat
ttaatcaaatccatacgattcagtcactccatcttctt
gaattcatgcgttcatgctgtaaacacatccctcttcctccttttatgta
atttccccattgccatgagatgaaacatttgcattactacatgttcctgc
cacaagttcctacctcaccatatccaaatattagaaggctgtagtctgaa
acttcaaaaatatgagtcaaggtcaaattttcttcataagttgattgcat
tacctgtattgataggaccagcaatctgaacaagggcaacctgtattcat
gttgctgctaccctccagacctgcagagaaaaagctaagaagaaaagatg
ccacattggaacttcctagtgactctttcctgtgattatctttacgaggc
tcaaaatgatggtttcttgggaaatttgatatccaattaaaagttggata
tcaaattgatatctttcactgcacctaatgcaatagtctacttacaatgt
tttgtttcctacaaataatccaaatgatgtcctacacaatctaattacac
tagattgtaagttcaaatatactactatgttcaattagctatttaagttt
atgtgtaaaacagaaagttggttatagtctcttgttctctatatttcaga
actaataaaggaggaagtccaactaactaaagtttagaaactcattgcta
aattctttatttttttcctggtatttgattatgtttaacacataaaagag
tgatgtaaaatttgtcttttatagactcgttatattaatattgttcattt
tatctctaagaagaaaatactttagagatgaacaggaaatttttccaccc
aaatgagaaaatattccagatgtgcatctgtttcacgaatgaaatcttgg
aaatatgagtccagacctgattctaaaccaaacattaacattaaaaggat
catttagtactaacttgagtatgacataactttaaaaagagaaaattttc
cttcatctaatttccctttgctatggctggtgttctttgtatactacagt
ggaacttcctttactgtggaaattcctgaaattttttctacctgtggccg
aaggggagaggaagagaagagagggaggggagaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_139539043_139540194
seq2: B6Ng01-093D05.b_45_1182

seq1  GAATTCAATGAAACAGCTCTCTTAGATGATCTTAGCTCATGGACATACCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAATGAAACAGCTCTCTTAGATGATCTTAGCTCATGGACATACCT  50

seq1  TTATTCGGAGTGGGCTTGTCCACATACACTTTATTTGGGGTGAGCCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCGGAGTGGGCTTGTCCACATACACTTTATTTGGGGTGAGCCCAGA  100

seq1  GTATTTATGGACCTTGGAGAGTGGAAAGGTAAATAGAAATAGAGTTTTCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTATGGACCTTGGAGAGTGGAAAGGTAAATAGAAATAGAGTTTTCA  150

seq1  GGGTAAATAGAAAAACATTGGGTAGAGTTTAAAGTTCTGTGAATGCCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAATAGAAAAACATTGGGTAGAGTTTAAAGTTCTGTGAATGCCTCA  200

seq1  TTTGTATGAAAAGGCATTCCAGGAACTCTGCATTGTAGCTGCTGGAGGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATGAAAAGGCATTCCAGGAACTCTGCATTGTAGCTGCTGGAGGTC  250

seq1  TGCCAAGGACTACTCAGCCTTCCTCAGGTAGAGGATGCTGGGAGGTTAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGGACTACTCAGCCTTCCTCAGGTAGAGGATGCTGGGAGGTTAGA  300

seq1  GAAGGGGCAGCCTTCTGGGTAAAGAGAGTCCGTCATGTTGCACTGAGCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGGCAGCCTTCTGGGTAAAGAGAGTCCGTCATGTTGCACTGAGCTC  350

seq1  AGAGAAACTATCTAGTCATGGTAGACTTTGACCTTAATTAGCAGAGTATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAACTATCTAGTCATGGTAGACTTTGACCTTAATTAGCAGAGTATC  400

seq1  CCCACACCTACATTTTATTTATACTTTCTGAACCCAATGCCAGCAATGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACACCTACATTTTATTTATACTTTCTGAACCCAATGCCAGCAATGGA  450

seq1  GCTACAGTTTGACCCACTTTCTGTCTTTTCTTAAGGAAAATCTGTTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACAGTTTGACCCACTTTCTGTCTTTTCTTAAGGAAAATCTGTTGTAA  500

seq1  AACACCAAAAAACAAAAAAAAAAAACAAAAAAAACAAAAAAGCTAGATCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACCAAAAAACAAAAAAAAAAAACAAAAAAAACAAAAAAGCTAGATCT  550

seq1  AAGAGATAGACTGTAGGAAATACATGTTGGCTCTATATTTTCAGGACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATAGACTGTAGGAAATACATGTTGGCTCTATATTTTCAGGACCCA  600

seq1  AAGAGTCAACCATGCAGCAACCACTCAGATGTTGGGTCTAAGAAAATTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTCAACCATGCAGCAACCACTCAGATGTTGGGTCTAAGAAAATTTG  650

seq1  CTTCCTACAGAGAATCTTTTCTCAGTGAATGTGAGCTCATAAACCCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTACAGAGAATCTTTTCTCAGTGAATGTGAGCTCATAAACCCACAT  700

seq1  GTACTCCTTCCTACTGCTGTAGGTCTGAAAATTCATCTCGGCTTCAGAGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCCTTCCTACTGCTGTAGGTCTGAAAATTCATCTCGGCTTCAGAGT  750

seq1  TTCAGCTAGGGTCAAGTTGAGCTTTATAGACAAAAGCTCGTAGCTTGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCTAGGGTCAAGTTGAGCTTTATAGACAAAAGCTCGTAGCTTGTAT  800

seq1  TACACCTTTCTCCCTCCTTTGGTTTCTTGCCACAGAATTCCAATTCCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCTTTCTCCCTCCTTTGGTTTCTTGCCACAGAATTCCAATTCCTGA  850

seq1  GTACTCTCCTTCATTCACTATCTGAATGTTCATGTGTTCATGTTTATCTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTCTCCTTCATTCACTATCTGAATGTTCATGTGTTCATGTTTATCTC  900

seq1  TGCTTTATGGGTCCCATCCTCGAAAATGCAAATGTCTTCAAATTCTCTGT  950
      |||||||||||||||||||||| |||||| ||||||||||||||||||||
seq2  TGCTTTATGGGTCCCATCCTCG-AAATGC-AATGTCTTCAAATTCTCTGT  948

seq1  GTCCTAAAACCATCTCACCCACAGAGGTTAAATATTTCTACCCTTCTTCT  1000
      ||||| |||||||||| |||||||||||||||||||||||||||||||||
seq2  GTCCT-AAACCATCTC-CCCACAGAGGTTAAATATTTCTACCCTTCTTCT  996

seq1  AATTCATAATCCTTGCCCAGGGTGGCTAAATTAAACACTATTTTTTCTTT  1050
       |||||| ||||||||||||||| |||||  | |||||||||||||||||
seq2  -ATTCATTATCCTTGCCCAGGGT-GCTAA--TTAACACTATTTTTTCTTT  1042

seq1  TTATTTAACACTTATTGGACTTACAATTTTTGTTGAGTATTTTGTATGTG  1100
      ||  ||||||| |||||||| |||||||||||||||| ||||||||||||
seq2  TTTATTAACAC-TATTGGAC-TACAATTTTTGTTGAGAATTTTGTATGTG  1090

seq1  CACAAGGCATATTATAATCAAATCCATAACGATTCAGTCCACTCCA-ATT  1149
        ||| ||| ||| ||||||||||||| |||||||||| |||||||  ||
seq2  GCCAA-GCA-ATT-TAATCAAATCCAT-ACGATTCAGT-CACTCCATCTT  1135

seq1  CTT  1152
      |||
seq2  CTT  1138

seq1: chr3_139741718_139742812
seq2: B6Ng01-093D05.g_69_1153 (reverse)

seq1  TCTCTCTCCCTCCCTCTCTCTCTTTCTTTCTCTCTCTCCCTCTGCCAACA  50
      |||||| ||||||||||||   | |||| |||||   ||||  | | |||
seq2  TCTCTC-CCCTCCCTCTCT---TCTCTTCCTCTC---CCCTTCGGCCACA  43

seq1  GGTAGAAAAAATTTCAGAGATTTCACAAGTAAAAGGAAGTTCACATGTAG  100
      |||||||||||||||||  |||||   ||| |||||||||||   |||||
seq2  GGTAGAAAAAATTTCAGGAATTTCCACAGT-AAAGGAAGTTCCACTGTAG  92

seq1  TTATACAAAGAACACAAGCCATAGCAAAGAGAAATTAGATGAAGGAAAAT  150
       |||||||||||||| ||||||||||||| ||||||||||||||||||||
seq2  -TATACAAAGAACACCAGCCATAGCAAAGGGAAATTAGATGAAGGAAAAT  141

seq1  TATCTCTTTTTAAAGTTATTGTCATACTCAAGTTAGTACTAAATGATCCT  200
      | |||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TTTCTCTTTTTAAAGTTA-TGTCATACTCAAGTTAGTACTAAATGATCCT  190

seq1  TTTAATGTTAATGTTTGGTTTAGAATCAGGTCTGGACTCATATTTCCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTTAATGTTTGGTTTAGAATCAGGTCTGGACTCATATTTCCAAG  240

seq1  ATTTCATTCGTGAAACAGATGCACATCTGGAATATTTTCTCATTTGGGTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTCGTGAAACAGATGCACATCTGGAATATTTTCTCATTTGGGTG  290

seq1  GAAAAATTTCCTGTTCATCTCTAAAGTATTTTCTTCTTAGAGATAAAATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTTCCTGTTCATCTCTAAAGTATTTTCTTCTTAGAGATAAAATG  340

seq1  AACAATATTAATATAACGAGTCTATAAAAGACAAATTTTACATCACTCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATATTAATATAACGAGTCTATAAAAGACAAATTTTACATCACTCTT  390

seq1  TTATGTGTTAAACATAATCAAATACCAGGAAAAAAATAAAGAATTTAGCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGTGTTAAACATAATCAAATACCAGGAAAAAAATAAAGAATTTAGCA  440

seq1  ATGAGTTTCTAAACTTTAGTTAGTTGGACTTCCTCCTTTATTAGTTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTTTCTAAACTTTAGTTAGTTGGACTTCCTCCTTTATTAGTTCTGA  490

seq1  AATATAGAGAACAAGAGACTATAACCAACTTTCTGTTTTACACATAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAGAGAACAAGAGACTATAACCAACTTTCTGTTTTACACATAAACT  540

seq1  TAAATAGCTAATTGAACATAGTAGTATATTTGAACTTACAATCTAGTGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAGCTAATTGAACATAGTAGTATATTTGAACTTACAATCTAGTGTA  590

seq1  ATTAGATTGTGTAGGACATCATTTGGATTATTTGTAGGAAACAAAACATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGATTGTGTAGGACATCATTTGGATTATTTGTAGGAAACAAAACATT  640

seq1  GTAAGTAGACTATTGCATTAGGTGCAGTGAAAGATATCAATTTGATATCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGTAGACTATTGCATTAGGTGCAGTGAAAGATATCAATTTGATATCC  690

seq1  AACTTTTAATTGGATATCAAATTTCCCAAGAAACCATCATTTTGAGCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTAATTGGATATCAAATTTCCCAAGAAACCATCATTTTGAGCCTC  740

seq1  GTAAAGATAATCACAGGAAAGAGTCACTAGGAAGTTCCAATGTGGCATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGATAATCACAGGAAAGAGTCACTAGGAAGTTCCAATGTGGCATCT  790

seq1  TTTCTTCTTAGCTTTTTCTCTGCAGGTCTGGAGGGTAGCAGCAACATGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTTAGCTTTTTCTCTGCAGGTCTGGAGGGTAGCAGCAACATGAA  840

seq1  TACAGGTTGCCCTTGTTCAGATTGCTGGTCCTATCAATACAGGTAATGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGTTGCCCTTGTTCAGATTGCTGGTCCTATCAATACAGGTAATGCA  890

seq1  ATCAACTTATGAAGAAAATTTGACCTTGACTCATATTTTTGAAGTTTCAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAACTTATGAAGAAAATTTGACCTTGACTCATATTTTTGAAGTTTCAG  940

seq1  ACTACAGCCTTCTAATATTTGGATATGGTGAGGTAGGAACTTGTGGCAGG  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACAGCCTTCTAATATTTGGATATGGTGAGGTAGGAACTTGTGGCAGG  990

seq1  AACATGTAGTAATGCAAATGTTTCATCTCATGGCAATGGGGAAATTACAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGTAGTAATGCAAATGTTTCATCTCATGGCAATGGGGAAATTACAT  1040

seq1  AAAAGGAGGAAGAGGGATGTGTTTACAGCATGAACGCATGAATTC  1095
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGAGGAAGAGGGATGTGTTTACAGCATGAACGCATGAATTC  1085