BAC Information

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BAC

Clone NameB6Ng01-093G08
Chromosome3 (Build37)
Map Location 98,131,776 - 98,305,049
singlet/doubletdoublet
Overlap genePhgdh, Zfp697, LOC100043461, Hsd3b4
Upstream geneOlfr1402, Chd1l, Fmo5, Prkab2, Pde4dip, Sec22b, EG433632, LOC100042975, Notch2, Adam30, LOC622561, Reg4, Hmgcs2
Downstream geneLOC100043456, EG545555, LOC676433, Hsd3b5, LOC668543, Hsd3b2, Hsd3b3, Hsd3b6, LOC545556, Hsd3b1, Hao3, LOC668557, Wars2, Tbx15, M6pr-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093G08.bB6Ng01-093G08.g
ACCDH904899DH904900
length8941,050
definitionDH904899|Mus musculus domesticus DNA, BAC clone: B6Ng01-093G08, 5' end.DH904900|Mus musculus domesticus DNA, BAC clone: B6Ng01-093G08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(98,304,162 - 98,305,049)(98,131,776 - 98,132,834)
sequence
gaattctttgttcagttgacgtcagtttttaaaacacataagggaacacc
tttccagaagaaaaatctagagacatattttccaaggtaaaaagacagct
tagattttgtcagcttgacacacagtagtcacctggaaagaaggaacttc
tactaaggaattgctccatccgattgtcgtctgtgggttattttcttggt
tagtgatggatatgagagggctggaatagatatgacactgcccacttggt
tgtgtcaaggctgagcaagaggtcctgggttatattatgtaaacaactta
aacgatcatgggatgcaagggaatagcattgggacttctgcctttgttcc
tacagtgacttttctcagtgatgaactgtaattttgacatatgagcccta
caaacccttccctcctccaagtttctttgttcgtggtgttaagcagagca
atagaaactaaattgggacagtgcctcagtggtaggggccttgcctaaca
tgtgaaagagccgaggttagttctgtagtattaacaaaaaaaagtacaaa
aaagaaaaaaaaacacatggacagagagagagagggagagagagagagag
agagctttataaattaaaaaaaaaacacctcaatttgtaaatctggaaat
ccctcatttccagaatctacatgtcacctccattaatttcagagtgaata
ttttcctatagaatagtaggtttgtgtcactatcaggtggtaatacattt
agccttctattggccattttcacggaaatttgggatggagaccagtctga
cccccattggcacggtgacctttggcttatttcttaacaatgatttgtgg
gcttcccatgggcaggactccgctcccactgggatgcttgtgtg
gaattctcagcttttgagttccaatgtcctgatagggagatcaaagttcc
tttttctctctgactttactgtctgttcagtaataggctctagagatcca
tgtacaacaaagccttcagcgtcttccatgcttagccatctcttccaata
ctgcttcagaaagaatgtgcccaaagtgtccggaaacctcttaccttcat
tccaaaggattgcattcgggtggccacctctcttccaattctgccgaggc
caagaattcccagtgtcttcccgttcagttctgtccccatgaactgcaac
cagaaaggcaaaaggcaaagatgaccaagtcaggtccaagagtaagggtt
gggagttgagcccgcatgggcaaggcaaggcaaggcaaggcaaggcaagg
caaggcaaggcaaggcaaagcaaggcaagagctcaccttcttccggtccc
atttgccatctttcatcgaagctgttgcctggggaatctgcctgtaagaa
cacagcaggttcagtgggtcaccctacagcccaggaagaaggtacaccga
tatctcagtgcagccactatctatctctgccattttcctgagaaccacac
aacgtgggtgggtggggggctcaggttcagggccactgtgtataagggaa
ggctgggacagtgagaacattggtaggacatgacttgggaaccatagaac
atctgtctctagccaggaggctgggggaagaatctgatgtgctctaacac
caaggtaccaagaagagtgagtgggtttggcaagttttctcctataagca
gcaccagccttcgaaagcttatagggactgatgcttcaagactcctgttt
ggttcttcttctggaccaaccactcttgatagcttctcttgttatcaggg
gcaagtgattaaccttctcttaaaccccaagagagctaatctgaagcagt
gggtaccatagcaacacagcccagaccttctactcagtcctgaatgatcc
tatacttctgaaccgtccaccacctgtcttactatttgaacccaccctcg

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_98304162_98305049
seq2: B6Ng01-093G08.b_43_936 (reverse)

seq1  CACACAAGCAT-CCAGTAGGAGCTGAGTACCTGCCCATAGGAAGCCCAC-  48
      ||||||||||| ||||| ||||| |||| ||||||||| |||||||||| 
seq2  CACACAAGCATCCCAGTGGGAGCGGAGT-CCTGCCCATGGGAAGCCCACA  49

seq1  AATCATTGCTAAGAAATAAGCCAAAGGTCACCGTGGCAAT-GGGGTCAGA  97
      |||||||| |||||||||||||||||||||||||| |||| |||||||||
seq2  AATCATTGTTAAGAAATAAGCCAAAGGTCACCGTGCCAATGGGGGTCAGA  99

seq1  CTGGTCTCCATCCCAAA-TTCCGTG-AAATGGCCAATAG-AGGCTAAATG  144
      ||||||||||||||||| ||||||| ||||||||||||| ||||||||||
seq2  CTGGTCTCCATCCCAAATTTCCGTGAAAATGGCCAATAGAAGGCTAAATG  149

seq1  TATTACCACCTGATAGTGACACAAACCTACTATTCTATAGG-AAATATTC  193
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TATTACCACCTGATAGTGACACAAACCTACTATTCTATAGGAAAATATTC  199

seq1  ACTCTGAAATTAATGGAGGTGACATGTAGATTCTGGAAATGAGGGATTTC  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAAATTAATGGAGGTGACATGTAGATTCTGGAAATGAGGGATTTC  249

seq1  CAGATTTACAAATTGAGGTGTTTTTTTTTTAATTTATAAAGCTCTCTCTC  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTTACAAATTGAGGTGTTTTTTTTTTAATTTATAAAGCTCTCTCTC  299

seq1  TCTCTCTCTCCCTCTCTCTCTCTGTCCATGTGTTTTTTTTTCTTTTTTGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTCTCTCCCTCTCTCTCTCTGTCCATGTGTTTTTTTTTCTTTTTTGT  349

seq1  ACTTTTTTTTGTTAATACTACAGAACTAACCTCGGCTCTTTCACATGTTA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTTGTTAATACTACAGAACTAACCTCGGCTCTTTCACATGTTA  399

seq1  GGCAAGGCCCCTACCACTGAGGCACTGTCCCAATTTAGTTTCTATTGCTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAGGCCCCTACCACTGAGGCACTGTCCCAATTTAGTTTCTATTGCTC  449

seq1  TGCTTAACACCACGAACAAAGAAACTTGGAGGAGGGAAGGGTTTGTAGGG  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAACACCACGAACAAAGAAACTTGGAGGAGGGAAGGGTTTGTAGGG  499

seq1  CTCATATGTCAAAATTACAGTTCATCACTGAGAAAAGTCACTGTAGGAAC  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATATGTCAAAATTACAGTTCATCACTGAGAAAAGTCACTGTAGGAAC  549

seq1  AAAGGCAGAAGTCCCAATGCTATTCCCTTGCATCCCATGATCGTTTAAGT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAGAAGTCCCAATGCTATTCCCTTGCATCCCATGATCGTTTAAGT  599

seq1  TGTTTACATAATATAACCCAGGACCTCTTGCTCAGCCTTGACACAACCAA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACATAATATAACCCAGGACCTCTTGCTCAGCCTTGACACAACCAA  649

seq1  GTGGGCAGTGTCATATCTATTCCAGCCCTCTCATATCCATCACTAACCAA  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGCAGTGTCATATCTATTCCAGCCCTCTCATATCCATCACTAACCAA  699

seq1  GAAAATAACCCACAGACGACAATCGGATGGAGCAATTCCTTAGTAGAAGT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAACCCACAGACGACAATCGGATGGAGCAATTCCTTAGTAGAAGT  749

seq1  TCCTTCTTTCCAGGTGACTACTGTGTGTCAAGCTGACAAAATCTAAGCTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTCTTTCCAGGTGACTACTGTGTGTCAAGCTGACAAAATCTAAGCTG  799

seq1  TCTTTTTACCTTGGAAAATATGTCTCTAGATTTTTCTTCTGGAAAGGTGT  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTACCTTGGAAAATATGTCTCTAGATTTTTCTTCTGGAAAGGTGT  849

seq1  TCCCTTATGTGTTTTAAAAACTGACGTCAACTGAACAAAGAATTC  888
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTTATGTGTTTTAAAAACTGACGTCAACTGAACAAAGAATTC  894

seq1: chr3_98131776_98132834
seq2: B6Ng01-093G08.g_66_1115

seq1  GAATTCTCAGCTTTTGAGTTCCAATGTCCTGATAGGGAGATCAAAGTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGCTTTTGAGTTCCAATGTCCTGATAGGGAGATCAAAGTTCC  50

seq1  TTTTTCTCTCTGACTTTACTGTCTGTTCAGTAATAGGCTCTAGAGATCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTCTCTGACTTTACTGTCTGTTCAGTAATAGGCTCTAGAGATCCA  100

seq1  TGTACAACAAAGCCTTCAGCGTCTTCCATGCTTAGCCATCTCTTCCAATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAACAAAGCCTTCAGCGTCTTCCATGCTTAGCCATCTCTTCCAATA  150

seq1  CTGCTTCAGAAAGAATGTGCCCAAAGTGTCCGGAAACCTCTTACCTTCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTTCAGAAAGAATGTGCCCAAAGTGTCCGGAAACCTCTTACCTTCAT  200

seq1  TCCAAAGGATTGCATTCGGGTGGCCACCTCTCTTCCAATTCTGCCGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGGATTGCATTCGGGTGGCCACCTCTCTTCCAATTCTGCCGAGGC  250

seq1  CAAGAATTCCCAGTGTCTTCCCGTTCAGTTCTGTCCCCATGAACTGCAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAATTCCCAGTGTCTTCCCGTTCAGTTCTGTCCCCATGAACTGCAAC  300

seq1  CAGAAAGGCAAAAGGCAAAGATGACCAAGTCAGGTCCAAGAGTAAGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAAGGCAAAAGGCAAAGATGACCAAGTCAGGTCCAAGAGTAAGGGTT  350

seq1  GGGAGTTGAGCCCGCATGGGCAAGGCAAGGCAAGGCAAGGCAAGGCAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTGAGCCCGCATGGGCAAGGCAAGGCAAGGCAAGGCAAGGCAAGG  400

seq1  CAAGGCAAGGCAAGGCAAAGCAAGGCAAGAGCTCACCTTCTTCCGGTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCAAGGCAAGGCAAAGCAAGGCAAGAGCTCACCTTCTTCCGGTCCC  450

seq1  ATTTGCCATCTTTCATCGAAGCTGTTGCCTGGGGAATCTGCCTGTAAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGCCATCTTTCATCGAAGCTGTTGCCTGGGGAATCTGCCTGTAAGAA  500

seq1  CACAGCAGGTTCAGTGGGTCACCCTACAGCCCAGGAAGAAGGTACACCGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCAGGTTCAGTGGGTCACCCTACAGCCCAGGAAGAAGGTACACCGA  550

seq1  TATCTCAGTGCAGCCACTATCTATCTCTGCCATTTTCCTGAGAACCACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTCAGTGCAGCCACTATCTATCTCTGCCATTTTCCTGAGAACCACAC  600

seq1  AACGTGGGTGGGTGGGGGGCTCAGGTTCAGGGCCACTGTGTATAAGGGAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTGGGTGGGTGGGGGGCTCAGGTTCAGGGCCACTGTGTATAAGGGAA  650

seq1  GGCTGGGACAGTGAGAACATTGGTAGGACATGACTTGGGAACCATAGAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGGACAGTGAGAACATTGGTAGGACATGACTTGGGAACCATAGAAC  700

seq1  ATCTGTCTCTAGCCAGGAGGCTGGGGGAAGAATCTGATGTGCTCTAACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTCTCTAGCCAGGAGGCTGGGGGAAGAATCTGATGTGCTCTAACAC  750

seq1  CAAGGTACCAAGAAGAGTGAGTGGGTTTGGCAAGTTTTCTCCTATAAGCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTACCAAGAAGAGTGAGTGGGTTTGGCAAGTTTTCTCCTATAAGCA  800

seq1  GCACCAGCCTTCGAAAGCTTATAGGGACTGATGCTTCAAAGACTCCTGTT  850
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  GCACCAGCCTTCGAAAGCTTATAGGGACTGATGCTTC-AAGACTCCTGTT  849

seq1  TGGTTCTTCTTCTGGACCAACCACTCTTGATAGCTTCTCTTGTTATCAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TGGTTCTTCTTCTGGACCAACCACTCTTGATAGCTTCTCTTGTTATC-AG  898

seq1  GGGCAGGTGATTAACCTTTCTTCTTAAACCCCAAGAGAGCTAATCTGAAG  950
      ||||| ||||||||||||   |||||||||||||||||||||||||||||
seq2  GGGCAAGTGATTAACCTT--CTCTTAAACCCCAAGAGAGCTAATCTGAAG  946

seq1  CAAGTGGGTACCATAGCAACACAGCCCAGACCTTTCTACTCAGTCCTGAA  1000
      | |||||||||||||||||||||||||||||| |||||||||||||||||
seq2  C-AGTGGGTACCATAGCAACACAGCCCAGACC-TTCTACTCAGTCCTGAA  994

seq1  TGATCCTAATACTTCTGACACGTCCACCACCTGTCCTACCTATTTTTGAC  1050
      ||||||| ||||||||||  ||||||||||||||| || ||| |||  ||
seq2  TGATCCT-ATACTTCTGAACCGTCCACCACCTGTCTTA-CTA-TTTGAAC  1041

seq1  CCACCCTCG  1059
      |||||||||
seq2  CCACCCTCG  1050