BAC Information

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BAC

Clone NameB6Ng01-093J18
Chromosome3 (Build37)
Map Location 95,864,023 - 96,054,076
singlet/doubletdoublet
Overlap geneLOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1
Upstream genePip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45
Downstream geneLOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364, Cd160, Pdzk1, Gpr89, Gja8, 9230114J08Rik, Gja5, Acp6, Bcl9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093J18.bB6Ng01-093J18.g
ACCDH905050DH905051
length1,0461,093
definitionDH905050|Mus musculus domesticus DNA, BAC clone: B6Ng01-093J18, 5' end.DH905051|Mus musculus domesticus DNA, BAC clone: B6Ng01-093J18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,053,021 - 96,054,076)(95,864,023 - 95,865,128)
sequence
gaattctacacccctaaacccctaactccataaaaacccctagctttcca
gcctcgtggccgacatccgttatctcctgtgtgggatgcatgttggtctg
gagctctgtcattaaactgcttcatgtgattacagaaagatggattctcg
tgtttctttgggtgctctctcactcctgagactagagtgggggtccccga
aagggggtcttacacttctgttggttatttcgcacagcaagaatgctgat
gttattagtactagtgatatcattagcacctgttattgtaaccaagatgc
aatgaaatcaccatactggctcactcctgggccagagaggtttactgggg
accaaacttcaaaactatctctcatggggtggggggcagagaaaagagca
aaagggtggaaaaacaagcagattttatgactgtcagcggggtgggtctc
tgtgctaatacaaacaggattgattgggaagtagatgccattgcctgagg
tacctggcctttggggtggattaagggaggctcttgacagattaagagat
tcctagcaaactacttttaggcctgtttatctaccaacaatcctgtttac
ctggccaaagttctgtttaggacactgtcaccagcactgccattttgggg
agttaactttggacctaacagttatgttctatccatgttgtgtaaattgt
aactatctacatccttaccccaagttatgtgggtacaattctatttcagg
tcaaagaaactatggggtccctgtcttttcttgtggccccttccccagtt
aagagtctggagttgggtcctgcctctccatgagccttatgttccaattc
atagcacgaggttcttactcccttctgaccaccttccctcctctctgcca
ctctttagattgattcatttgttgatacttgggggaggtcccatcctgag
ctcgcaccacatccaagaatgtctctgcagtgccgactctcgtgaacaag
gaggggcttttcctggccaccagcccctggggctccggggtggggg
gaattcacaggttaccaacgcaagaatcaaagagcctttttttttaatag
aaatgtggaattatctttaaaagctagtgaaacataaaacccttatgctt
gtgggttcaaatttcctgccccttggtattcttgtacagtagagcatcat
tcccacacttttaacccagaagtggccatgcagggccactgggcccccat
tgcctctgagctgcttcagttgtcagctttcccagtgtcccctgtgtgtg
gccatgagagaaatttcatgctctaaaaaactctcacatgtttatgaagc
atgcacacagatgctctaacagagtcactgagagtcgtaagataaagttg
taaacaatctgagtgtccatcactcaaagaatgaatacataatatctaca
ataagtaataactttgaaattaactactgtatttggtgtgggatgagtta
gaacttaaagcttccttggataaaaacagagtactgggaataaaagcagc
tcatgcctttttaaatagtgtactaccagactgtaaaaatagcatattgc
taaaacctcaggccagaaagatgcataaacaaatgcttcatgattcagtc
agagagggagcaaggggcacacaactgaaggccagaacatagctgcatgc
tgaggctttacaatgtgtcagggaagtagagggcacttggctattctgta
tcttttctcagctttgggagacttagtagctggataaaatgtagcattta
caaattctcttcaacaagtacccatcaagtatattctgtgttggatgctg
tattaatgtgccgaggacatcataacggtgccaacagacaaaggggctaa
cccaacagaatggcattttctcatatttctggagggtgaacatccaaggt
caagtgtccagggttgacttctcttgggtcttctgcagaaggtctgtcct
gtgatagcacatgatctctctgagcctctgtatcctatttcctatacaac
aaatgtattgggtagaagctctctgatgactggcattggaattagttgtc
tccctgagaaccccaacttaatacaggcacctccagcattgac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_96053021_96054076
seq2: B6Ng01-093J18.b_42_1087 (reverse)

seq1  CCCCCACCCCGTGAGCACCAGGGGGCTGGTGGCCAAGGAAAAGGCCCCTC  50
      ||||||||||| |||| ||| ||||||||||||| ||||||| |||||||
seq2  CCCCCACCCCG-GAGCCCCA-GGGGCTGGTGGCC-AGGAAAA-GCCCCTC  46

seq1  TTTGTATCACTGAGGAGTCGGCACTGCAGAGACATTTCTTTGGGATGTGG  100
       |||| |||| || |||||||||||||||||||| |||||  |||||| |
seq2  CTTGT-TCAC-GA-GAGTCGGCACTGCAGAGACA-TTCTT--GGATGT-G  89

seq1  GTGCGAGCTCAGGATGGGACCTCCCCAAAGTATCAACAAATGAAATCAAT  150
      |||||||||||||||||||||||||| ||||||||||||||| |||||||
seq2  GTGCGAGCTCAGGATGGGACCTCCCCCAAGTATCAACAAATG-AATCAAT  138

seq1  CTAAAGAGTGGCAGAGAGGAGGGAAGGTGGTCAGAAGGGAGTAAGAACCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGAGTGGCAGAGAGGAGGGAAGGTGGTCAGAAGGGAGTAAGAACCT  188

seq1  CGTGCTATGAATTGGAACATAAGGCTCATGGAGAGGCAGGACCCAACTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCTATGAATTGGAACATAAGGCTCATGGAGAGGCAGGACCCAACTCC  238

seq1  AGACTCTTAACTGGGGAAGGGGCCACAAGAAAAGACAGGGA-CCCATAGT  299
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AGACTCTTAACTGGGGAAGGGGCCACAAGAAAAGACAGGGACCCCATAGT  288

seq1  TTCTTTGACCTG-AATAGAATTGTACCCACATAACTTGGGGTAAGGATGT  348
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGACCTGAAATAGAATTGTACCCACATAACTTGGGGTAAGGATGT  338

seq1  AGATAGTTACAATTTACACAACATGGATAGAACATAACTGTTAGGTCCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATAGTTACAATTTACACAACATGGATAGAACATAACTGTTAGGTCCAA  388

seq1  AGTTAACTCCCCAAAATGGCAGTGCTGGTGACAGTGTCCTAAACAGAACT  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAACTCCCCAAAATGGCAGTGCTGGTGACAGTGTCCTAAACAGAACT  438

seq1  TTGGCCAGGTAAACAGGATTGTTGGTAGATAAACAGGCCTAAAAGTAGTT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCCAGGTAAACAGGATTGTTGGTAGATAAACAGGCCTAAAAGTAGTT  488

seq1  TGCTAGGAATCTCTTAATCTGTCAAGAGCCTCCCTTAATCCACCCCAAAG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGGAATCTCTTAATCTGTCAAGAGCCTCCCTTAATCCACCCCAAAG  538

seq1  GCCAGGTACCTCAGGCAATGGCATCTACTTCCCAATCAATCCTGTTTGTA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGGTACCTCAGGCAATGGCATCTACTTCCCAATCAATCCTGTTTGTA  588

seq1  TTAGCACAGAGACCCACCCCGCTGACAGTCATAAAATCTGCTTGTTTTTC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACAGAGACCCACCCCGCTGACAGTCATAAAATCTGCTTGTTTTTC  638

seq1  CACCCTTTTGCTCTTTTCTCTGCCCCCCACCCCATGAGAGATAGTTTTGA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCTTTTGCTCTTTTCTCTGCCCCCCACCCCATGAGAGATAGTTTTGA  688

seq1  AGTTTGGTCCCCAGTAAACCTCTCTGGCCCAGGAGTGAGCCAGTATGGTG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGTCCCCAGTAAACCTCTCTGGCCCAGGAGTGAGCCAGTATGGTG  738

seq1  ATTTCATTGCATCTTGGTTACAATAACAGGTGCTAATGATATCACTAGTA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCATTGCATCTTGGTTACAATAACAGGTGCTAATGATATCACTAGTA  788

seq1  CTAATAACATCAGCATTCTTGCTGTGCGAAATAACCAACAGAAGTGTAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAACATCAGCATTCTTGCTGTGCGAAATAACCAACAGAAGTGTAAG  838

seq1  ACCCCCTTTCGGGGACCCCCACTCTAGTCTCAGGAGTGAGAGAGCACCCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCCCTTTCGGGGACCCCCACTCTAGTCTCAGGAGTGAGAGAGCACCCA  888

seq1  AAGAAACACGAGAATCCATCTTTCTGTAATCACATGAAGCAGTTTAATGA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAACACGAGAATCCATCTTTCTGTAATCACATGAAGCAGTTTAATGA  938

seq1  CAGAGCTCCAGACCAACATGCATCCCACACAGGAGATAACGGATGTCGGC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTCCAGACCAACATGCATCCCACACAGGAGATAACGGATGTCGGC  988

seq1  CACGAGGCTGGAAAGCTAGGGGTTTTTATGGAGTTAGGGGTTTAGGGGTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGAGGCTGGAAAGCTAGGGGTTTTTATGGAGTTAGGGGTTTAGGGGTG  1038

seq1  TAGAATTC  1056
      ||||||||
seq2  TAGAATTC  1046

seq1: chr3_95864023_95865128
seq2: B6Ng01-093J18.g_69_1161

seq1  GAATTCACAGGTTACCAACGCAAGAATCAAAGAGCCTTTTTTTTTAATAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGGTTACCAACGCAAGAATCAAAGAGCCTTTTTTTTTAATAG  50

seq1  AAATGTGGAATTATCTTTAAAAGCTAGTGAAACATAAAACCCTTATGCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGTGGAATTATCTTTAAAAGCTAGTGAAACATAAAACCCTTATGCTT  100

seq1  GTGGGTTCAAATTTCCTGCCCCTTGGTATTCTTGTACAGTAGAGCATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGTTCAAATTTCCTGCCCCTTGGTATTCTTGTACAGTAGAGCATCAT  150

seq1  TCCCACACTTTTAACCCAGAAGTGGCCATGCAGGGCCACTGGGCCCCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACACTTTTAACCCAGAAGTGGCCATGCAGGGCCACTGGGCCCCCAT  200

seq1  TGCCTCTGAGCTGCTTCAGTTGTCAGCTTTCCCAGTGTCCCCTGTGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCTGAGCTGCTTCAGTTGTCAGCTTTCCCAGTGTCCCCTGTGTGTG  250

seq1  GCCATGAGAGAAATTTCATGCTCTAAAAAACTCTCACATGTTTATGAAGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGAGAGAAATTTCATGCTCTAAAAAACTCTCACATGTTTATGAAGC  300

seq1  ATGCACACAGATGCTCTAACAGAGTCACTGAGAGTCGTAAGATAAAGTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCACACAGATGCTCTAACAGAGTCACTGAGAGTCGTAAGATAAAGTTG  350

seq1  TAAACAATCTGAGTGTCCATCACTCAAAGAATGAATACATAATATCTACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAATCTGAGTGTCCATCACTCAAAGAATGAATACATAATATCTACA  400

seq1  ATAAGTAATAACTTTGAAATTAACTACTGTATTTGGTGTGGGATGAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTAATAACTTTGAAATTAACTACTGTATTTGGTGTGGGATGAGTTA  450

seq1  GAACTTAAAGCTTCCTTGGATAAAAACAGAGTACTGGGAATAAAAGCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTAAAGCTTCCTTGGATAAAAACAGAGTACTGGGAATAAAAGCAGC  500

seq1  TCATGCCTTTTTAAATAGTGTACTACCAGACTGTAAAAATAGCATATTGC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCTTTTTAAATAGTGTACTACCAGACTGTAAAAATAGCATATTGC  550

seq1  TAAAACCTCAGGCCAGAAAGATGCATAAACAAATGCTTCATGATTCAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACCTCAGGCCAGAAAGATGCATAAACAAATGCTTCATGATTCAGTC  600

seq1  AGAGAGGGAGCAAGGGGCACACAACTGAAGGCCAGAACATAGCTGCATGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGGGAGCAAGGGGCACACAACTGAAGGCCAGAACATAGCTGCATGC  650

seq1  TGAGGCTTTACAATGTGTCAGGGAAGTAGAGGGCACTTGGCTATTCTGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCTTTACAATGTGTCAGGGAAGTAGAGGGCACTTGGCTATTCTGTA  700

seq1  TCTTTTCTCAGCTTTGGGAGACTTAGTAGCTGGATAAAATGTAGCATTTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTCAGCTTTGGGAGACTTAGTAGCTGGATAAAATGTAGCATTTA  750

seq1  CAAATTCTCTTCAACAAGTACCCATCAAGTATATTCTGTGTTGGATGCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTCTCTTCAACAAGTACCCATCAAGTATATTCTGTGTTGGATGCTG  800

seq1  TATTAATGTGCCGAGGACATCATAACGGTGCCAACAGACAAAGAGGCTAA  850
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TATTAATGTGCCGAGGACATCATAACGGTGCCAACAGACAAAGGGGCTAA  850

seq1  ACCAACAGAATGGCATTTTCTCATATTTCTGGAGGGTGAACATCCAAGGT  900
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAACAGAATGGCATTTTCTCATATTTCTGGAGGGTGAACATCCAAGGT  900

seq1  CAAGGTGTCCAGGGTTGACTTCTTCTTGGGTCTTCTGCAGAAGGTCTTGT  950
      ||| |||||||||||||||||| ||||||||||||||||||||||| |||
seq2  CAA-GTGTCCAGGGTTGACTTC-TCTTGGGTCTTCTGCAGAAGGTC-TGT  947

seq1  CCTGTGATAGCACATGATCTCTCTGAGCCTCTGTATTCTAATTTCCTCAT  1000
      |||||||||||||||||||||||||||||||||||| || ||||||| ||
seq2  CCTGTGATAGCACATGATCTCTCTGAGCCTCTGTATCCT-ATTTCCT-AT  995

seq1  ACAAACCAAATGTATTGGGTTAGAGGCTCTCTGATGACTGCATTTGGATT  1050
      ||||  ||||||||||||| |||| |||||||||||||||   ||||| |
seq2  ACAA--CAAATGTATTGGG-TAGAAGCTCTCTGATGACTGGCATTGGAAT  1042

seq1  TAGTTGTCTCCTTTAAAGACCCCAACTCTAAATACAGCTACCTTCTAAGC  1100
      ||||||||||| | | | |||||||  || |||||||  |||| |  |||
seq2  TAGTTGTCTCCCTGAGA-ACCCCAA--CTTAATACAGGCACCTCC--AGC  1087

seq1  ATTGAC  1106
      ||||||
seq2  ATTGAC  1093