BAC Information

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BAC

Clone NameB6Ng01-093N15
Chromosome3 (Build37)1 (Build37)
Map Location 19,522,060 - 19,523,20462,160,827 - 62,161,315
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneArmc1, Mtfr1, Pde7a, Dnajc5b, EG620290
Downstream geneTrim55, Crh, LOC665002, LOC100039304, LOC100040237, 4632415L05Rik, Cp, Hps3, Hltf, Gyg, Cpa3, EG664965, LOC100040283, Cpb1, Agtr1b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093N15.bB6Ng01-093N15.g
ACCDH905224DH905225
length1,124955
definitionDH905224|Mus musculus domesticus DNA, BAC clone: B6Ng01-093N15, 5' end.DH905225|Mus musculus domesticus DNA, BAC clone: B6Ng01-093N15, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(19,522,060 - 19,523,204)(62,160,827 - 62,161,315)
sequence
gaattctataaagtcagacatgatttcttaaagtgagaatggtactcaaa
ctcaatacatccagatttatcccttcccaacttgaagcgattgcatcaag
agtataaatctaactttatgtattgtgttttattatcctgagtccataaa
actgagataagaacattgttatggcatcaaaaagtaagacatttcaatac
cactaataaaatgagatgcaaaaatcttttcatgactttaaatgttacct
attcataatacaactgaaattatacccaattttccctttgtacaaaataa
ggtacaaattgtgaaatttccattagtaaagatatattatcctcctgcca
aacttccaaattggtaatcttctattagtttttcataacacagagggaat
agagcttggcaaagttttacttttacttaacatcatgcttgctgcactgt
atggaaggaatgcaggtgagcctctgtgtgcattagtgtgcatgcgtctc
acagcaactgtttatgcctctgcccttctgtgtttccacaccaacatgat
aagcacattcctctccacactccaggtctctctcttcgctccatttctct
cttggcactcagctctgttgagttactgtacatgttattgtttatctgcc
tctccagaactgagtgttccatctggttaggaggttgtgtcttccttttc
atcattctggaatagcccagcagctgtcaataagtgctgcagaccctctg
ggtcccttgtctgcgtggaacgagtccctgggtgcagatgggcaaggagt
tggcaagtgacagacagacgcacacaggaggttgtgtagaatctgaatgt
attgtcacaaagtgaacaacagtcttatatagtacagaaagtaaaaggga
taggaagtcacagcaggcaaagtgcattgaagttgcctgacacaaaacaa
aggaatgacttcaaaaggatttacaggatcaggtaatgttacagtaagat
aaagcagtcttgctggggtcagctagtgacaggtaggattcacaccttat
tgctactcttgagctggaaggctagcacagggggtctggcctacagaatt
gcccctatttctaggctgttaaat
gaattctagccagaccgtgcatggaaaacatggctctggcaggccttgct
cttcccccgttccttctaccttgttcccttccccttccatctcattctct
atttcctgtctttgtctcttgttccctgccctctgtacatttggggcaaa
taaatattccttgtacttagaactcagtcactgtgtgtcttgtgctgact
tcaggttcctttcagggttctcctgggagcttgccaagtgctgtccagtg
gatgtgctaactcagattgctgcaagccactgataattcctgattaacta
ttggcagtagcaggtggctgtcctggcagcagtgcattccaagactacaa
gactagggaaagaatggtctaaactgcattgtgtagcagtgtcaagtccc
aaagtccaatcggcccagacaacataaccatttatgaaggtgagccctga
agaaaattctcttttagtagaaaaaggcacagaaacaggaggcaaattct
agtagaattctgcaacagtcgtcttatttatttatttatttatttattta
tttatttatttatttatttttattagatattttcttcatttacatttcaa
atgctatcccaaaagttccctataccctccctctgctctgctcccctacc
cactcactcccacatcttggcctggcattcccctgtactggggcatataa
agtttgctagaccaaggggcctctcttcccaatgatggccaactagacca
tcttctgctacatatgcagctggagacacgagttctggggatactggtta
gttcatattgttcacttctgtatttgccaggtacctgcaaagcctcacag
gagacagcatatcaggtcctttcaggaaatcttgctggcatatgcaatag
tgtctgcatttggtggctgattatggatggacaccgggtgggcagtctct
ggatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_19522060_19523204
seq2: B6Ng01-093N15.b_51_1174

seq1  GAATTCTATAAAGTCAGACATGATTTCTTAAAGTGAGAATGGTACTCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAAAGTCAGACATGATTTCTTAAAGTGAGAATGGTACTCAAA  50

seq1  CTCAATACATCCAGATTTATCCCTTCCCAACTTGAAGCGATTGCATCAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAATACATCCAGATTTATCCCTTCCCAACTTGAAGCGATTGCATCAAG  100

seq1  AGTATAAATCTAACTTTATGTATTGTGTTTTATTATCCTGAGTCCATAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAAATCTAACTTTATGTATTGTGTTTTATTATCCTGAGTCCATAAA  150

seq1  ACTGAGATAAGAACATTGTTATGGCATCAAAAAGTAAGACATTTCAATAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGATAAGAACATTGTTATGGCATCAAAAAGTAAGACATTTCAATAC  200

seq1  CACTAATAAAATGAGATGCAAAAATCTTTTCATGACTTTAAATGTTACCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAATAAAATGAGATGCAAAAATCTTTTCATGACTTTAAATGTTACCT  250

seq1  ATTCATAATACAACTGAAATTATACCCAATTTTCCCTTTGTACAAAATAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATAATACAACTGAAATTATACCCAATTTTCCCTTTGTACAAAATAA  300

seq1  GGTACAAATTGTGAAATTTCCATTAGTAAAGATATATTATCCTCCTGCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAAATTGTGAAATTTCCATTAGTAAAGATATATTATCCTCCTGCCA  350

seq1  AACTTCCAAATTGGTAATCTTCTATTAGTTTTTCATAACACAGAGGGAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCCAAATTGGTAATCTTCTATTAGTTTTTCATAACACAGAGGGAAT  400

seq1  AGAGCTTGGCAAAGTTTTACTTTTACTTAACATCATGCTTGCTGCACTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTGGCAAAGTTTTACTTTTACTTAACATCATGCTTGCTGCACTGT  450

seq1  ATGGAAGGAATGCAGGTGAGCCTCTGTGTGCATTAGTGTGCATGCGTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAAGGAATGCAGGTGAGCCTCTGTGTGCATTAGTGTGCATGCGTCTC  500

seq1  ACAGCAACTGTTTATGCCTCTGCCCTTCTGTGTTTCCACACCAACATGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCAACTGTTTATGCCTCTGCCCTTCTGTGTTTCCACACCAACATGAT  550

seq1  AAGCACATTCCTCTCCACACTCCAGGTCTCTCTCTTCGCTCCATTTCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACATTCCTCTCCACACTCCAGGTCTCTCTCTTCGCTCCATTTCTCT  600

seq1  CTTGGCACTCAGCTCTGTTGAGTTACTGTACATGTTATTGTTTATCTGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCACTCAGCTCTGTTGAGTTACTGTACATGTTATTGTTTATCTGCC  650

seq1  TCTCCAGAACTGAGTGTTCCATCTGGTTAGGAGGTTGTGTCTTCCTTTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGAACTGAGTGTTCCATCTGGTTAGGAGGTTGTGTCTTCCTTTTC  700

seq1  ATCATTCTGGAATAGCCCAGCAGCTGTCAATAAGTGCTGCAGACCCTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTCTGGAATAGCCCAGCAGCTGTCAATAAGTGCTGCAGACCCTCTG  750

seq1  GGTCCCTTGTCTGCGTGGAACGAGTCCCTGGGTGCAGATGGGCAAGGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCCTTGTCTGCGTGGAACGAGTCCCTGGGTGCAGATGGGCAAGGAGT  800

seq1  TGGCAAGTGACAGACAGACGCACACAGGAGGTTGTGTAGAATCTGAATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCAAGTGACAGACAGACGCACACAGGAGGTTGTGTAGAATCTGAATGT  850

seq1  ATTGTCACAAAGTGAACAACAGTCTTATATAGTACAGAAAGTAAAAGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCACAAAGTGAACAACAGTCTTATATAGTACAGAAAGTAAAAGGGA  900

seq1  TAGGAAGTCACAGCAGGCAAAGTGCATTGAAGTTGCCTGACACAAAACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGTCACAGCAGGCAAAGTGCATTGAAGTTGCCTGACACAAAACAA  950

seq1  AGGAATGACTTCAAAAGGATTTACAGGAATCAGGTAAATGTTTACAGTAA  1000
      ||||||||||||||||||||||||||| ||||||| |||| ||||||| |
seq2  AGGAATGACTTCAAAAGGATTTACAGG-ATCAGGT-AATG-TTACAGT-A  996

seq1  AGATAAAGCAGTCCTGCCTGGGGTCAGCTTAGTGACAGGTAAGGATTTCA  1050
      ||||||||||||| || ||||||||||| ||||||||||| |||| ||||
seq2  AGATAAAGCAGTCTTG-CTGGGGTCAGC-TAGTGACAGGT-AGGA-TTCA  1042

seq1  CACCCTAATGCTACTCCTTTGAGCCTTGTGAAAGCTAGCACCAGGGGGTT  1100
      |||| || ||||||||  ||||||  || ||| ||||||| ||||||| |
seq2  CACCTTATTGCTACTC--TTGAGC--TG-GAAGGCTAGCA-CAGGGGG-T  1085

seq1  CTGCTCTTAGCAGAATGCCCCCCTATTTCCTAGGCCTTGTTAAAT  1145
      |||  ||   ||||||   ||||||||| ||||||  ||||||||
seq2  CTGGCCT--ACAGAAT-TGCCCCTATTT-CTAGGC--TGTTAAAT  1124

seq1: chr1_62160827_62161315
seq2: B6Ng01-093N15.g_634_1019 (reverse)

seq1  CCAGAGACTGCCCCACCCGGGGGCCCATCCCATAATTAGCCACCAAACTC  50
      |||||||||| ||||||| || | |||| ||||||| ||||||||||  |
seq2  CCAGAGACTG-CCCACCC-GGTGTCCAT-CCATAATCAGCCACCAAATGC  47

seq1  AGACACAATTGCATATGCCAGCAAGAATTTGCTGAAAGGACCCTGATATA  100
      |||||| |||||||||||||||||| |||| ||||||||| |||||||| 
seq2  AGACACTATTGCATATGCCAGCAAG-ATTTCCTGAAAGGA-CCTGATAT-  94

seq1  GCTGTCTCCTGTGAGACTTTGCCAGTGCCTGGCAAATACAGAAGTGATGC  150
      ||||||||||||||| ||||||  || |||||||||||||||||||    
seq2  GCTGTCTCCTGTGAGGCTTTGCAGGTACCTGGCAAATACAGAAGTG----  140

seq1  TCACAGTCATCTATAGGATGGAACACAGGGCCCCCAATGGAGGAGCTAGA  200
                                                        
seq2  --------------------------------------------------  140

seq1  GAAAGTACCTAAGGAGCTGAGAGGTCTGCAACCCTATAGGTGGAACAACA  250
                                                    ||||
seq2  ----------------------------------------------AACA  144

seq1  ATATGAACTAACCAGTACCCCCAGAACTTGTGTCTCTAGCTGCATATGTA  300
      ||||||||||||||||| |||||||||| ||||||| |||||||||||||
seq2  ATATGAACTAACCAGTATCCCCAGAACTCGTGTCTCCAGCTGCATATGTA  194

seq1  TCAGAAGATGGCCTAGTCGGCCATCGTTGGGAAGAGAGGACCCTTGGTCT  350
       |||||||||| ||||| ||||||| ||||||||||||| ||||||||||
seq2  GCAGAAGATGGTCTAGTTGGCCATCATTGGGAAGAGAGGCCCCTTGGTCT  244

seq1  TGCAAGCTTTATATGCCCCAGTACAGGGGAATGCCAGGGCCAAGAAGTGG  400
       |||| |||||||||||||||||||||||||||||| |||||||| ||||
seq2  AGCAAACTTTATATGCCCCAGTACAGGGGAATGCCA-GGCCAAGATGTGG  293

seq1  GAGTGAGTGGGTAGAGGAGCAG----GGGGGGGGGTATAGGGGACTTTTG  446
      |||||||||||||| |||||||    | ||| |||||||||| |||||||
seq2  GAGTGAGTGGGTAGGGGAGCAGAGCAGAGGGAGGGTATAGGGAACTTTTG  343

seq1  GGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATGAAAA  489
      |||||||||||||||||||||||||||||||||||||| ||||
seq2  GGATAGCATTTGAAATGTAAATGAAGAAAATATCTAATAAAAA  386