BAC Information

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BAC

Clone NameB6Ng01-093P12
Chromosome3 (Build37)
Map Location 122,111,570 - 122,252,549
singlet/doubletdoublet
Overlap geneBcar3, Fnbp1l
Upstream geneCnn3, Slc44a3, A730020M07Rik, 4930432M17Rik, F3, Abcd3, LOC100043298, Arhgap29, Abca4, EG668788, LOC626807, LOC100043724, Gclm, Ppia-ps3_1245.1, Dnttip2, LOC675117, LOC100043726
Downstream genePpia-ps3_2252.1, Pde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-093P12.bB6Ng01-093P12.g
ACCDH905311DH905312
length1,0971,077
definitionDH905311|Mus musculus domesticus DNA, BAC clone: B6Ng01-093P12, 5' end.DH905312|Mus musculus domesticus DNA, BAC clone: B6Ng01-093P12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,111,570 - 122,112,671)(122,251,464 - 122,252,549)
sequence
gaattctttccccagggttagcacactcacagcatcaatgtctccagagg
caccttacctgtcctgtgttttgattttgtaagcagtgtggtaccagcct
atttttgtaccgagtacttcaaggtcagagaccgccttgcacgcaggggg
acggacacgacttaagttttgtgagtcggatactccgagtgaagaaacag
aaactagaaatttaatcatccgacccacaatccactgtgagtcactgcag
aatgtgtggggattgttcattgacttccttccattggtcaccgaggaagt
gggctctcactccctccgtgttcatgaacccgagacatacaaggtcacat
ggagatcacacagggggtcagtcttcccggaaatgctgacaactgagaag
tctgcctcccacatccaccgggacagtgggtctgtgagggggcagaagct
tgggcggtggtactttctgtctccaagtgcaggaagaaggactttccctc
ctgccgcctggggcgatgtctgggacattccttcacagaacagaacatgg
ccaagccctggcagtgccacttaacacaactcacctgggacattgctgac
gtgcaggttcttgggcagtgcccctgggtgtggctgggccttggcatctc
tgacgaatgcctggggggatggagattgactgctagggagctgcttcgtt
gtgcttgggggaacaacaggccagagagtcacctctgtgagccatctatg
tactatgtggcgtctaccatagaggaggcttggatgaggttctgaccatt
agattcaaggctctcccacctcaccccaccccaccccactcctgtctgaa
ccccctttaaaaagttctgttcacaaatattaccgagtccttcgcaagca
tcgtgcactttgcaaatgaatgatctctctgcccagttcatctcagtttc
agtgctggggttggacctcagcactgtgtaaaaggcccacgttgtcactg
agttagatcctcattctgctagactctttgaaaaatcactttgccatccc
atgctactcaggctttaaaagaacttctctgcttccctctgagagca
gaattctatgtaagagtacatacagagtagttcaataatataaatgagaa
atgttgtgtgttcccattttgttgttgctgtaagaagacttgtgtgtatt
cattttaactgtcaagacttgaaataatgtaatatagttcataattacct
gtatttggtaagatttcttttttttttcctgcctattttcatgtttttat
aaatatgaaatttaagctttgaattttactaatacatctgtatagatttt
tttttaagttgaagctaaataaaaattgaagttagttgcttcatttataa
aaaaggtaaagttaagaaacaacatatctgaaagtgtctcaataatgatt
taggctctcttttcagggcccagcactagaagatttcagtcatttgccac
cagagcagaggcggaagaagttacagcagcgcattgacgagcttaaccga
gggctgcagaaggaagcagaccaaaagtagcgtttccttgagccctccct
cattgctctcccttctggaactaatgagtgctgtgtacactgacacagag
tgcttccagatcgttggttctgggctggggataagtcagtgggaaaagtg
ctggcctagcattcatgaggacccgagttcaatcctatcattcccccaaa
tcatatatcccgattgaaacactttttgaaacatttgaaattttttattt
ttatttcattatgtatgagtgtttgatctgcatgtatatctatgtatcac
ctgcatgcctggtgcctgtggaggccagcagacccctgggactggagtta
gaaatggtttgtgagcttccatggtggatgctgggaatagaacctgggtc
ctctgaagatcagtcagttgattttaactttctgagtcatctctccagcc
cgtgacacacctttgtttgtttgttttagggaaaagtaaaatgacctaaa
ctagaaacattatggcttacatattagataagtaaaaatcaatgtcaggt
ttggttgggttggctttgtttttgttttcattagaatttgtagtcccgta
gaattccacaattttgtaaacaaacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_122111570_122112671
seq2: B6Ng01-093P12.b_46_1142

seq1  GAATTCTTTCCCCAGGGTTAGCACACTCACAGCATCAATGTCTCCAGAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCCCCAGGGTTAGCACACTCACAGCATCAATGTCTCCAGAGG  50

seq1  CACCTTACCTGTCCTGTGTTTTGATTTTGTAAGCAGTGTGGTACCAGCCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTACCTGTCCTGTGTTTTGATTTTGTAAGCAGTGTGGTACCAGCCT  100

seq1  ATTTTTGTACCGAGTACTTCAAGGTCAGAGACCGCCTTGCACGCAGGGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGTACCGAGTACTTCAAGGTCAGAGACCGCCTTGCACGCAGGGGG  150

seq1  ACGGACACGACTTAAGTTTTGTGAGTCGGATACTCCGAGTGAAGAAACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGACACGACTTAAGTTTTGTGAGTCGGATACTCCGAGTGAAGAAACAG  200

seq1  AAACTAGAAATTTAATCATCCGACCCACAATCCACTGTGAGTCACTGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTAGAAATTTAATCATCCGACCCACAATCCACTGTGAGTCACTGCAG  250

seq1  AATGTGTGGGGATTGTTCATTGACTTCCTTCCATTGGTCACCGAGGAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTGTGGGGATTGTTCATTGACTTCCTTCCATTGGTCACCGAGGAAGT  300

seq1  GGGCTCTCACTCCCTCCGTGTTCATGAACCCGAGACATACAAGGTCACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCTCACTCCCTCCGTGTTCATGAACCCGAGACATACAAGGTCACAT  350

seq1  GGAGATCACACAGGGGGTCAGTCTTCCCGGAAATGCTGACAACTGAGAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATCACACAGGGGGTCAGTCTTCCCGGAAATGCTGACAACTGAGAAG  400

seq1  TCTGCCTCCCACATCCACCGGGACAGTGGGTCTGTGAGGGGGCAGAAGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCCCACATCCACCGGGACAGTGGGTCTGTGAGGGGGCAGAAGCT  450

seq1  TGGGCGGTGGTACTTTCTGTCTCCAAGTGCAGGAAGAAGGACTTTCCCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCGGTGGTACTTTCTGTCTCCAAGTGCAGGAAGAAGGACTTTCCCTC  500

seq1  CTGCCGCCTGGGGCGATGTCTGGGACATTCCTTCACAGAACAGAACATGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGCCTGGGGCGATGTCTGGGACATTCCTTCACAGAACAGAACATGG  550

seq1  CCAAGCCCTGGCAGTGCCACTTAACACAACTCACCTGGGACATTGCTGAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCCTGGCAGTGCCACTTAACACAACTCACCTGGGACATTGCTGAC  600

seq1  GTGCAGGTTCTTGGGCAGTGCCCCTGGGTGTGGCTGGGCCTTGGCATCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAGGTTCTTGGGCAGTGCCCCTGGGTGTGGCTGGGCCTTGGCATCTC  650

seq1  TGACGAATGCCTGGGGGGATGGAGATTGACTGCTAGGGAGCTGCTTCGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGAATGCCTGGGGGGATGGAGATTGACTGCTAGGGAGCTGCTTCGTT  700

seq1  GTGCTTGGGGGAACAACAGGCCAGAGAGTCACCTCTGTGAGCCATCTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTTGGGGGAACAACAGGCCAGAGAGTCACCTCTGTGAGCCATCTATG  750

seq1  TACTATGTGGCGTCTACCATAGAGGAGGCTTGGATGAGGTTCTGACCATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGTGGCGTCTACCATAGAGGAGGCTTGGATGAGGTTCTGACCATT  800

seq1  AGATTCAAGGCTCTCCCACCTCACCCCACCCCACCCCACTCCTGTCTGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCAAGGCTCTCCCACCTCACCCCACCCCACCCCACTCCTGTCTGAA  850

seq1  CCCCCTTTAAAAAGTTCTGTTCACAAATATTACCGAGTCCTTCGCAAGCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTTTAAAAAGTTCTGTTCACAAATATTACCGAGTCCTTCGCAAGCA  900

seq1  TCGTGCACTTTGCAAATGAATGATCTCTCTGCCCAGTTCATCTCAGTTTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGCACTTTGCAAATGAATGATCTCTCTGCCCAGTTCATCTCAGTTTC  950

seq1  AGTGCTGGGGTTGGACCTCAGCACTGTGTAAAAGGCACACGTTGTCACTG  1000
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGTGCTGGGGTTGGACCTCAGCACTGTGTAAAAGGCCCACGTTGTCACTG  1000

seq1  AGTTAGATCCTCATTCTGCTAGACTCTTTGAAGAATCACTTTGCCATTCC  1050
      |||||||||||||||||||||||||||||||| ||||||||||||||  |
seq2  AGTTAGATCCTCATTCTGCTAGACTCTTTGAAAAATCACTTTGCCAT--C  1048

seq1  ACATGCTACTCAGGGCTTTTAAACAGAACTTCTCTGC-TCCCTCTGAAGA  1099
       ||||||||||| ||||||  || ||||||||||||| |||||||| |||
seq2  CCATGCTACTCA-GGCTTT--AAAAGAACTTCTCTGCTTCCCTCTG-AGA  1094

seq1  GCA  1102
      |||
seq2  GCA  1097

seq1: chr3_122251464_122252549
seq2: B6Ng01-093P12.g_69_1145 (reverse)

seq1  TTGTTTGTTTTTACAAATTTGTGGAATTCTAACAGGGACTAACAAAATGC  50
      |||||||  |||||||| |||||||||||||   |||||| |||||    
seq2  TTGTTTG--TTTACAAAATTGTGGAATTCTA--CGGGACT-ACAAA---T  42

seq1  TATAATGAAAACAAAAAACAAAAACCAACCAACCAAACCCTGACATTTGA  100
      | |||||||||| |||||||||  | | ||||||||| ||||||| ||||
seq2  TCTAATGAAAAC-AAAAACAAAGCCAACCCAACCAAA-CCTGACA-TTGA  89

seq1  TTTTTACTTATCTAATATGTAAGCCATAATGTTTTCTAGTTTAGGTCATT  150
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TTTTTACTTATCTAATATGTAAGCCATAATG-TTTCTAGTTTAGGTCATT  138

seq1  TTACTTTTCCCTAAAACAAACAAACAAAGGTGTGTCACGGGCTGGAGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTTTCCCTAAAACAAACAAACAAAGGTGTGTCACGGGCTGGAGAGA  188

seq1  TGACTCAG-AAGTTAAAATC-ACTGACTGATCTTTCAGAGGACCCAGGTT  248
      |||||||| ||||||||||| ||||||||||| |||||||||||||||||
seq2  TGACTCAGAAAGTTAAAATCAACTGACTGATC-TTCAGAGGACCCAGGTT  237

seq1  CTATTCCCAGCATCCA-CATGGAAGCTCAC-AACCATTTCTAACTCCAGT  296
      |||||||||||||||| ||||||||||||| |||||||||||||||||||
seq2  CTATTCCCAGCATCCACCATGGAAGCTCACAAACCATTTCTAACTCCAGT  287

seq1  TCCAGGGGTCTGCTGGCCTCCACAGGCACCAGGCATGCAGGTGATACATA  346
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGGGTCTGCTGGCCTCCACAGGCACCAGGCATGCAGGTGATACATA  337

seq1  GATATACATGCAGATCAAACACTCATACATAATGAAATAAAAATAAAAAA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATACATGCAGATCAAACACTCATACATAATGAAATAAAAATAAAAAA  387

seq1  TTTCAAATGTTTCAAAAAGTGTTTCAATCGGGATATATGATTTGGGGGAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAATGTTTCAAAAAGTGTTTCAATCGGGATATATGATTTGGGGGAA  437

seq1  TGATAGGATTGAACTCGGGTCCTCATGAATGCTAGGCCAGCACTTTTCCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAGGATTGAACTCGGGTCCTCATGAATGCTAGGCCAGCACTTTTCCC  487

seq1  ACTGACTTATCCCCAGCCCAGAACCAACGATCTGGAAGCACTCTGTGTCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTTATCCCCAGCCCAGAACCAACGATCTGGAAGCACTCTGTGTCA  537

seq1  GTGTACACAGCACTCATTAGTTCCAGAAGGGAGAGCAATGAGGGAGGGCT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACACAGCACTCATTAGTTCCAGAAGGGAGAGCAATGAGGGAGGGCT  587

seq1  CAAGGAAACGCTACTTTTGGTCTGCTTCCTTCTGCAGCCCTCGGTTAAGC  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGAAACGCTACTTTTGGTCTGCTTCCTTCTGCAGCCCTCGGTTAAGC  637

seq1  TCGTCAATGCGCTGCTGTAACTTCTTCCGCCTCTGCTCTGGTGGCAAATG  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCAATGCGCTGCTGTAACTTCTTCCGCCTCTGCTCTGGTGGCAAATG  687

seq1  ACTGAAATCTTCTAGTGCTGGGCCCTGAAAAGAGAGCCTAAATCATTATT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAAATCTTCTAGTGCTGGGCCCTGAAAAGAGAGCCTAAATCATTATT  737

seq1  GAGACACTTTCAGATATGTTGTTTCTTAACTTTACCTTTTTTATAAATGA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACACTTTCAGATATGTTGTTTCTTAACTTTACCTTTTTTATAAATGA  787

seq1  AGCAACTAACTTCAATTTTTATTTAGCTTCAACTTAAAAAAAAATCTATA  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACTAACTTCAATTTTTATTTAGCTTCAACTTAAAAAAAAATCTATA  837

seq1  CAGATGTATTAGTAAAATTCAAAGCTTAAATTTCATATTTATAAAAACAT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGTATTAGTAAAATTCAAAGCTTAAATTTCATATTTATAAAAACAT  887

seq1  GAAAATAGGCAGGAAAAAAAAAAGAAATCTTACCAAATACAGGTAATTAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATAGGCAGGAAAAAAAAAAGAAATCTTACCAAATACAGGTAATTAT  937

seq1  GAACTATATTACATTATTTCAAGTCTTGACAGTTAAAATGAATACACACA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTATATTACATTATTTCAAGTCTTGACAGTTAAAATGAATACACACA  987

seq1  AGTCTTCTTACAGCAACAACAAAATGGGAACACACAACATTTCTCATTTA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTTCTTACAGCAACAACAAAATGGGAACACACAACATTTCTCATTTA  1037

seq1  TATTATTGAACTACTCTGTATGTACTCTTACATAGAATTC  1086
      ||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTGAACTACTCTGTATGTACTCTTACATAGAATTC  1077