BAC Information

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BAC

Clone NameB6Ng01-094E15
Chromosome3 (Build37)
Map Location 80,786,886 - 80,922,425
singlet/doubletdoublet
Overlap geneEG626841, Pdgfc
Upstream geneEG626797, Gria2, Glrb
Downstream geneLOC229443, LOC100041901, Ctso, Tdo2, Accn5, Gucy1b3, Gucy1a3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094E15.bB6Ng01-094E15.g
ACCDH905551DH905552
length1,190950
definitionDH905551|Mus musculus domesticus DNA, BAC clone: B6Ng01-094E15, 5' end.DH905552|Mus musculus domesticus DNA, BAC clone: B6Ng01-094E15, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,921,232 - 80,922,425)(80,786,886 - 80,787,818)
sequence
gaattcctgagtgttgtggccagcctgtatatccaaatgcataggctcta
actcaaaaaaagaggtaggtgaagagactggagaggaaaatatctgacat
tgacctgtgacctccacatagacacacatgtgagtgaacacacacacaca
cacacacatttgagcatacatacatgtgcacacacatatgagcacacaga
cacacatcgtgagttccctttgctatacacctcctttatgcttccaataa
cacaagactgtggaaacataccgttcctcatgattcgagacttctgattg
acagatgattgaactctctaactctaagtagcttcttgtattatagagtg
ggatgagtgtctttcttgaagttagaaaacatagatgttttccatactgc
cagtagcattttttcatattttaaagaaaaacaaacaaatttgaaaaaaa
aaaaagagttttgcccagttctaaaggagaataggaaaccatgtcctgtt
tcaaaatagtgtaagttctgatacatgccttagcaaatctatgtgtgtgt
gtggcttccacaggcagaaacaatccagaatgctagaagaaacagcccat
ccctttgatcatctaaattaacatcagtaacactgatatagatttttagt
ttcatttttcaatgaaactaatttttaatataaaatttatccatgaaaac
ttaataaattattaaacaatggcaggatgagaaacatttatcattggata
agttattatcattaaaaactcttctttgcagaccaaggggcctctcttcc
caatgactaggccatcttctgctatatatgcagctagagacacgagctcc
gggatactggttagttcatattgtttcacctatttgcagggttgcagatc
cctttagctccttgggtactttctctagctcctccactgggggacctgtg
ttcatccaatagctgactgtgagcatccacttctgtgtttgccagcactg
gcatagcctcataagaaacagctattatcaaggttctttcagcaatttgc
tggcgaatgcaaatggtttctggtgtttggaggctgatataggggatgga
tcccttgaatatggcaagttcctagataggtccattcttcgtctcgactc
caactttgtcctggtactccttccatggggtttgttccca
gaattctgttcgtgatgcttacatctgaagttcccgatctctttccttgg
tttttcatcttaaagattatctccctttgtggtttctttattgtttctat
ttccatttttaggtcttggaccattttgttcaattccttcacctatttga
ttgtattgtcctgtatttctttaaggtatttatttgtttcctcatttaga
acttctacctgtttgcctgtgttttcctgtatttcttcaacataattatt
tatatcctccttacagtcttctatcgttatcatgagatgagattttaggt
tgaaatcttgctcttcaggtatattagggtatccagggcttgctgtagta
aaagaactgggttctgatagtaccaaattacattggcttctgttgcttat
gttcttgtgtttgcctttaccatctggttatctatggtgttaactggtct
gggtgtttcagactggaacagacttcctagtaggaaggtaaaggtgtgtg
tcctgggttagagcaggcctccttggagacaggaaatgctatctctggtt
aagacaggcctcttctgaccctggttagggtagacttcctgggagaaaag
caagctgtgaggtttcagggggtagacacaacactctgccacgggtatag
gtagaggtggtgaccagaagggggatggggctgaggcatagtgtaatata
tcccacatctactgggctctgtggcgattccattcaatgtaggtattggg
gtagggttctcatctgtgttcctgactagagcagatttcctgggagacag
tcagactgtggggttggcctagagtcaggggttgaggggagggattgtcc
aggcacagtgatctgccacaagttcaggtagaagtgcaaacttgaaaggc
tgcacttttttgaaaacatgtaattttattatgcaattaaataactcaga

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_80921232_80922425
seq2: B6Ng01-094E15.b_44_1233 (reverse)

seq1  TGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTG  50
      ||||||||||   ||||||||||||||  ||| ||||||| ||||||  |
seq2  TGGGAACAAA--CCCCATGGAAGGAGTACCAG-GACAAAG-TTGGAGTCG  46

seq1  AGACGAAAGGATGGACC-ATCTAGAGAC-TGCCATA-TCCAGGGATCCAT  97
      ||||| ||| ||||||| ||||||  || ||||||| || ||||||||||
seq2  AGACG-AAGAATGGACCTATCTAGGAACTTGCCATATTCAAGGGATCCAT  95

seq1  CCCATA-ATCAGCCTCCAAACA-CAGATACCA-TTGCATTCGCCAGCAAG  144
      ||| || ||||||||||||||| |||| |||| |||||||||||||||| 
seq2  CCCCTATATCAGCCTCCAAACACCAGAAACCATTTGCATTCGCCAGCAA-  144

seq1  ATTTTGCTGAAAGAACCCTGAT-ATAGCTGTTTCTTATGAGGCTATGCCA  193
         |||||||||||||| |||| |||||||||||||||||||||||||||
seq2  --ATTGCTGAAAGAACCTTGATAATAGCTGTTTCTTATGAGGCTATGCCA  192

seq1  GTGCCTGGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGAA  243
      ||| |||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTG-CTGGCAAACACAGAAGTGGATGCTCACAGTCAGCTATTGGAT-GAA  240

seq1  CACAGGTCCCCCAGTGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGG  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTCCCCCAGTGGAGGAGCTAGAGAAAGTACCCAAGGAGCTAAAGG  290

seq1  GATCTGCAACCCTGCAAATAGGTGAAACAATATGAACTAACCAGTATCCC  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTGCAACCCTGCAAATAGGTGAAACAATATGAACTAACCAGTATCCC  340

seq1  GGAGCTCGTGTCTCTAGCTGCATATATAGCAGAAGATGGCCTAGTCATTG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTCGTGTCTCTAGCTGCATATATAGCAGAAGATGGCCTAGTCATTG  390

seq1  GGAAGAGAGGCCCCTTGGTCTTGCAAAGAAGAGTTTTTAATGATAATAAC  443
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  GGAAGAGAGGCCCCTTGGTC-TGCAAAGAAGAGTTTTTAATGATAATAAC  439

seq1  TTATCCAATGATAAATGTTTCTCATCCTGCCATTGTTTAATAATTTATTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCAATGATAAATGTTTCTCATCCTGCCATTGTTTAATAATTTATTA  489

seq1  AGTTTTCATGGATAAATTTTATATTAAAAATTAGTTTCATTGAAAAATGA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCATGGATAAATTTTATATTAAAAATTAGTTTCATTGAAAAATGA  539

seq1  AACTAAAAATCTATATCAGTGTTACTGATGTTAATTTAGATGATCAAAGG  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAAATCTATATCAGTGTTACTGATGTTAATTTAGATGATCAAAGG  589

seq1  GATGGGCTGTTTCTTCTAGCATTCTGGATTGTTTCTGCCTGTGGAAGCCA  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGGCTGTTTCTTCTAGCATTCTGGATTGTTTCTGCCTGTGGAAGCCA  639

seq1  CACACACACATAGATTTGCTAAGGCATGTATCAGAACTTACACTATTTTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACATAGATTTGCTAAGGCATGTATCAGAACTTACACTATTTTG  689

seq1  AAACAGGACATGGTTTCCTATTCTCCTTTAGAACTGGGCAAAACTCTTTT  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGACATGGTTTCCTATTCTCCTTTAGAACTGGGCAAAACTCTTTT  739

seq1  TTTTTTTTCAAATTTGTTTGTTTTTCTTTAAAATATGAAAAAATGCTACT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTCAAATTTGTTTGTTTTTCTTTAAAATATGAAAAAATGCTACT  789

seq1  GGCAGTATGGAAAACATCTATGTTTTCTAACTTCAAGAAAGACACTCATC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTATGGAAAACATCTATGTTTTCTAACTTCAAGAAAGACACTCATC  839

seq1  CCACTCTATAATACAAGAAGCTACTTAGAGTTAGAGAGTTCAATCATCTG  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCTATAATACAAGAAGCTACTTAGAGTTAGAGAGTTCAATCATCTG  889

seq1  TCAATCAGAAGTCTCGAATCATGAGGAACGGTATGTTTCCACAGTCTTGT  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCAGAAGTCTCGAATCATGAGGAACGGTATGTTTCCACAGTCTTGT  939

seq1  GTTATTGGAAGCATAAAGGAGGTGTATAGCAAAGGGAACTCACGATGTGT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTGGAAGCATAAAGGAGGTGTATAGCAAAGGGAACTCACGATGTGT  989

seq1  GTCTGTGTGCTCATATGTGTGTGCACATGTATGTATGCTCAAATGTGTGT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTGCTCATATGTGTGTGCACATGTATGTATGCTCAAATGTGTGT  1039

seq1  GTGTGTGTGTGTGTTCACTCACATGTGTGTCTATGTGGAGGTCACAGGTC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTTCACTCACATGTGTGTCTATGTGGAGGTCACAGGTC  1089

seq1  AATGTCAGATATTTTCCTCTCCAGTCTCTTCACCTACCTCTTTTTTTGAG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCAGATATTTTCCTCTCCAGTCTCTTCACCTACCTCTTTTTTTGAG  1139

seq1  TTAGAGCCTATGCATTTGGATATACAGGCTGGCCACAACACTCAGGAATT  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGCCTATGCATTTGGATATACAGGCTGGCCACAACACTCAGGAATT  1189

seq1  C  1194
      |
seq2  C  1190

seq1: chr3_80786886_80787818
seq2: B6Ng01-094E15.g_88_1015

seq1  ATCTGAAGTTCCCGATCTCTTTCCTTGGTTTTTCATCTTAAAGATTATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGAAGTTCCCGATCTCTTTCCTTGGTTTTTCATCTTAAAGATTATCT  50

seq1  CCCTTTGTGGTTTCTTTATTGTTTCTATTTCCATTTTTAGGTCTTGGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGTGGTTTCTTTATTGTTTCTATTTCCATTTTTAGGTCTTGGACC  100

seq1  ATTTTGTTCAATTCCTTCACCTATTTGATTGTATTGTCCTGTATTTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTTCAATTCCTTCACCTATTTGATTGTATTGTCCTGTATTTCTTT  150

seq1  AAGGTATTTATTTGTTTCCTCATTTAGAACTTCTACCTGTTTGCCTGTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTATTTATTTGTTTCCTCATTTAGAACTTCTACCTGTTTGCCTGTGT  200

seq1  TTTCCTGTATTTCTTCAACATAATTATTTATATCCTCCTTACAGTCTTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTGTATTTCTTCAACATAATTATTTATATCCTCCTTACAGTCTTCT  250

seq1  ATCGTTATCATGAGATGAGATTTTAGGTTGAAATCTTGCTCTTCAGGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGTTATCATGAGATGAGATTTTAGGTTGAAATCTTGCTCTTCAGGTAT  300

seq1  ATTAGGGTATCCAGGGCTTGCTGTAGTAAAAGAACTGGGTTCTGATAGTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGTATCCAGGGCTTGCTGTAGTAAAAGAACTGGGTTCTGATAGTA  350

seq1  CCAAATTACATTGGCTTCTGTTGCTTATGTTCTTGTGTTTGCCTTTACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTACATTGGCTTCTGTTGCTTATGTTCTTGTGTTTGCCTTTACCA  400

seq1  TCTGGTTATCTATGGTGTTAACTGGTCTGGGTGTTTCAGACTGGAACAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGTTATCTATGGTGTTAACTGGTCTGGGTGTTTCAGACTGGAACAGA  450

seq1  CTTCCTAGTAGGAAGGTAAAGGTGTGTGTCCTGGGTTAGAGCAGGCCTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTAGTAGGAAGGTAAAGGTGTGTGTCCTGGGTTAGAGCAGGCCTCC  500

seq1  TTGGAGACAGGAAATGCTATCTCTGGTTAAGACAGGCCTCTTCTGACCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGACAGGAAATGCTATCTCTGGTTAAGACAGGCCTCTTCTGACCCT  550

seq1  GGTTAGGGTAGACTTCCTGGGAGAAAAGCAAGCTGTGAGGTTTCAGGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTAGGGTAGACTTCCTGGGAGAAAAGCAAGCTGTGAGGTTTCAGGGGG  600

seq1  TAGACACAACACTCTGCCACGGGTATAGGTAGAGGTGGTGACCAGAAGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACACAACACTCTGCCACGGGTATAGGTAGAGGTGGTGACCAGAAGGG  650

seq1  GGATGGGGCTGAGGCATAGTGTAATATATCCCACATCTACTGGGCTCTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGGGGCTGAGGCATAGTGTAATATATCCCACATCTACTGGGCTCTGT  700

seq1  GGCGATTCCATTCAATGTAGGTATTGGGGTAGGGTTCTCATCTGTGTTCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGATTCCATTCAATGTAGGTATTGGGGTAGGGTTCTCATCTGTGTTCC  750

seq1  TGACTAGAGCAGAATTCCTGGGAGACAGTCAGACTGTGGGGTTTGGCTAG  800
      ||||||||||||| ||||||||||||||||||||||||||||| | ||||
seq2  TGACTAGAGCAGATTTCCTGGGAGACAGTCAGACTGTGGGGTTGGCCTAG  800

seq1  AGTCAGGGGTTGAGGGGAGGGATTGTACAGGCACAGTGATCTGCCACAAG  850
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AGTCAGGGGTTGAGGGGAGGGATTGTCCAGGCACAGTGATCTGCCACAAG  850

seq1  TTCAGGTAGAAGTGCAGACTTGAAAAGGCTGCAGCTTTTTTGAAAAACAT  900
      |||||||||||||||| ||||| |||||||||| |||||||| |||||||
seq2  TTCAGGTAGAAGTGCAAACTTG-AAAGGCTGCA-CTTTTTTG-AAAACAT  897

seq1  GTAATTTTATTATGCAATTAAAATAACTTCAGA  933
      ||||||||||||||||||| ||||||| |||||
seq2  GTAATTTTATTATGCAATT-AAATAAC-TCAGA  928