BAC Information

Click to search

BAC

Clone NameB6Ng01-094F20
Chromosome3 (Build37)
Map Location 65,623,863 - 65,759,605
singlet/doubletdoublet
Overlap geneCcnl1
Upstream gene4933425M15Rik, LOC670110, Kcnab1, Ssr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866
Downstream geneLOC625048, Veph1, Tpi-rs2, Ptx3, LOC625115
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094F20.bB6Ng01-094F20.g
ACCDH905609DH905610
length1,1441,140
definitionDH905609|Mus musculus domesticus DNA, BAC clone: B6Ng01-094F20, 5' end.DH905610|Mus musculus domesticus DNA, BAC clone: B6Ng01-094F20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(65,758,446 - 65,759,605)(65,623,863 - 65,625,019)
sequence
gaattcttatttttagtgaataaaggaacattttctagtagtatatgagt
tgttgagccaactataatcacatgatcgtttggtgtttttctgtgggact
tcttccttcctaggtgtcagaataggatcatctttttataaaacttcaaa
atttaaaataattcaatctgactggcttgtattggatataaacttcattt
ttgatcatcattaaagagaaattgattttgtttcaatgtttcaaatttga
ttatagcatgaaattcttaaagaagttaattgcatggaagcccccctttt
aaaagcaggatataagtgtttctatgcatattacaagtttactcagacat
gtaacttgtatatgttattaacttcaactcttttttcccttgcaaccgac
tatacagcgaccagctacatttaccaaagcctgggtgatgtggagtggta
catagagatgaagctgtcgtcatggcaacagtgagtgaagtatcgaaatc
cccaaggagaagccagtgttctgagaataggtcactggaatcggggacta
acaggttggccactggtgaaccatttagagaaaaacaaacaaacaaacaa
aaaactcctgtttcttgttaaaagcttttgtctttgctgtccaagttatt
aaaactatagctttaaaaggtggtgggggtttttatttatttttcttttt
ttctttccctttttcccccccatagggcatggttagaaagtattcataaa
tgttttactctgatactcttattggtttgtcttgaattttagtccaattt
gtgcaaattaactaggttattctatggccttgacaattacaaggggtaca
tagccttttctagtcatggctgctacatgtagatagtacgatcaagtgtt
tgaagaaaacaaaacatttcagtcctcagtttgagataattgacttatct
ctcatagttttttatattttgtatttttagatagctgattcaaaggaaag
ttaaagctatttatatccgcgtttacagataaatttgctgttctatgtat
gttcccaggtctctctttcagaagtaggtttctggttaaaagagtataac
cttgaagatttactacttttatggtgcctgttattctgttttca
gaattccagtgtcgtttgaaacaggaaactggccgtgatgattcaatttc
cgaagagttgaagaaggaaatgaaacagaagtcagacgagctggaaagag
taaggctggcccagacacagctgctgcagcagttcagccagtcacaggaa
gaggtaggaagcagagagcccccagtgaggaccatggccagttaaaaagc
aggcaggcaggcaggcaggcaggtacgcagacagacagacagacagacaa
atgcaaatgtgacaggcagttggaggtcaagaagagagtcacagcctggc
tcccaggcatcccttggcttcataggacagttctcttcttaagtatcatt
tattctttgagaatctcatgcatacatactgtgtatctctgttagtcata
ttcatacacatcccttcccttctctcaactatggaatccccctacgccct
cttcccaacctgacgtccagtgttttgttttgtttaataacagtcccgtg
tatccatgagtgtgcagccatatactggggcctggtccatctaccagggg
ccacaccctaaagaaaagctgactgtctttcccctagtagctaccagttg
tcagcactgcttctcaactaggggtgggaggctcacgtgcccctcctgct
ccaagctggaccctggctggcctgatcctatgtggctcttatatatacag
tctcagcctctacagagttcagaagtacaagggtcttgtcgtgtcctaga
gaatacccaaccctatttcttagactctttctgttccctcttccaccatg
ttccatggaccctggggggattggtgtgatattgatgtcccatttttggc
tgagccctttctagaaaccagttctgtgcagcaaaataatccttaaaagc
tccacactagaagttcttcaattagatctcacttgctttatagtaaatcc
tcacaaagaaagcgtcagggcacatgtgcttacatcaaaaatgtgggaac
atgtaagttatttgagtctcatgttttaagcttctgtcacctgacttgta
agcaactacatgcttcgtcttctgccttaacaatgcacagtatatcagta
gtgtttccttgtttgaaaaggcttatttcattgaaaattt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_65758446_65759605
seq2: B6Ng01-094F20.b_49_1192 (reverse)

seq1  TGAAAACAGAATAAACAGCCACCAATAAAAGTAGTTAAATCTTACAAGTT  50
      |||||||||||| ||||| |||| |||||||||| |||||||| |||| |
seq2  TGAAAACAGAAT-AACAGGCACC-ATAAAAGTAG-TAAATCTT-CAAGGT  46

seq1  TATCTTCTTGTAA-CAGAAACCTTAACTTCTTTAAAGAGAAGACTGGGAA  99
      |||  |||| ||| |||||||||  ||||| | |||||||   |||||||
seq2  TATACTCTTTTAACCAGAAACCT--ACTTC-TGAAAGAGAGACCTGGGAA  93

seq1  CATTACATAGAAACAGCAAATTTTATCTGTAAACCGCGGATATAAATAGC  149
      || ||||||| ||||||||| |||||||||||| ||||||||||||||||
seq2  CA-TACATAG-AACAGCAAA-TTTATCTGTAAA-CGCGGATATAAATAGC  139

seq1  TTTAACTTTCCTTTGAATTCAGCTATTCTAAAGAATTACCAAAATATAAA  199
      ||||||||||||||||| ||||||| |||||| |||   |||||||||||
seq2  TTTAACTTTCCTTTGAA-TCAGCTA-TCTAAA-AAT--ACAAAATATAAA  184

seq1  AAACTAATGAGAGATAAGTCAATTATCTCAAACTGAGGACTGAAATGTTT  249
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACT-ATGAGAGATAAGTCAATTATCTCAAACTGAGGACTGAAATGTTT  233

seq1  TGTTTTTCTTCAAACACTTGATCGTACTATCTACATGTAGCAGCCATGAC  299
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TTTTCTTCAAACACTTGATCGTACTATCTACATGTAGCAGCCATGAC  282

seq1  TAGAAAAGGCTATGTACCCCTTGTAATTGTCAAGGCCATAGAATAACCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGGCTATGTACCCCTTGTAATTGTCAAGGCCATAGAATAACCTA  332

seq1  GTTAATTTGCACAAATTGGACTAAAATTCAAGACAAACCAATAAGAGTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATTTGCACAAATTGGACTAAAATTCAAGACAAACCAATAAGAGTAT  382

seq1  CAGAGTAAAACATTTATGAATACTTTCTAACCATGCCCTATGGGGGGGAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTAAAACATTTATGAATACTTTCTAACCATGCCCTATGGGGGGGAA  432

seq1  AAAGGGAAAGAAAAAAAGAAAAATAAATAAAAA-CCCCACCACCTTTTAA  498
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAAGGGAAAGAAAAAAAGAAAAATAAATAAAAACCCCCACCACCTTTTAA  482

seq1  AGCTATAGTTTTAATAACTTGGACAGCAAAGACAAAAGCTTTTAACAAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAGTTTTAATAACTTGGACAGCAAAGACAAAAGCTTTTAACAAGA  532

seq1  AACAGGAGTTTTTTGTTTGTTTGTTTGTTTTTCTCTAAATGGTTCACCAG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAGTTTTTTGTTTGTTTGTTTGTTTTTCTCTAAATGGTTCACCAG  582

seq1  TGGCCAACCTGTTAGTCCCCGATTCCAGTGACCTATTCTCAGAACACTGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAACCTGTTAGTCCCCGATTCCAGTGACCTATTCTCAGAACACTGG  632

seq1  CTTCTCCTTGGGGATTTCGATACTTCACTCACTGTTGCCATGACGACAGC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCCTTGGGGATTTCGATACTTCACTCACTGTTGCCATGACGACAGC  682

seq1  TTCATCTCTATGTACCACTCCACATCACCCAGGCTTTGGTAAATGTAGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCTCTATGTACCACTCCACATCACCCAGGCTTTGGTAAATGTAGCT  732

seq1  GGTCGCTGTATAGTCGGTTGCAAGGGAAAAAAGAGTTGAAGTTAATAACA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGCTGTATAGTCGGTTGCAAGGGAAAAAAGAGTTGAAGTTAATAACA  782

seq1  TATACAAGTTACATGTCTGAGTAAACTTGTAATATGCATAGAAACACTTA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAGTTACATGTCTGAGTAAACTTGTAATATGCATAGAAACACTTA  832

seq1  TATCCTGCTTTTAAAAGGGGGGCTTCCATGCAATTAACTTCTTTAAGAAT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCTGCTTTTAAAAGGGGGGCTTCCATGCAATTAACTTCTTTAAGAAT  882

seq1  TTCATGCTATAATCAAATTTGAAACATTGAAACAAAATCAATTTCTCTTT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATGCTATAATCAAATTTGAAACATTGAAACAAAATCAATTTCTCTTT  932

seq1  AATGATGATCAAAAATGAAGTTTATATCCAATACAAGCCAGTCAGATTGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGATGATCAAAAATGAAGTTTATATCCAATACAAGCCAGTCAGATTGA  982

seq1  ATTATTTTAAATTTTGAAGTTTTATAAAAAGATGATCCTATTCTGACACC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTAAATTTTGAAGTTTTATAAAAAGATGATCCTATTCTGACACC  1032

seq1  TAGGAAGGAAGAAGTCCCACAGAAAAACACCAAACGATCATGTGATTATA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAAGGAAGAAGTCCCACAGAAAAACACCAAACGATCATGTGATTATA  1082

seq1  GTTGGCTCAACAACTCATATACTACTAGAAAATGTTCCTTTATTCACTAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGCTCAACAACTCATATACTACTAGAAAATGTTCCTTTATTCACTAA  1132

seq1  AAATAAGAATTC  1160
      ||||||||||||
seq2  AAATAAGAATTC  1144

seq1: chr3_65623863_65625019
seq2: B6Ng01-094F20.g_68_1207

seq1  GAATTCCAGTGTCGTTTGAAACAGGAAACTGGCCGTGATGATTCAATTTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGTCGTTTGAAACAGGAAACTGGCCGTGATGATTCAATTTC  50

seq1  CGAAGAGTTGAAGAAGGAAATGAAACAGAAGTCAGACGAGCTGGAAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAGAGTTGAAGAAGGAAATGAAACAGAAGTCAGACGAGCTGGAAAGAG  100

seq1  TAAGGCTGGCCCAGACACAGCTGCTGCAGCAGTTCAGCCAGTCACAGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGCTGGCCCAGACACAGCTGCTGCAGCAGTTCAGCCAGTCACAGGAA  150

seq1  GAGGTAGGAAGCAGAGAGCCCCCAGTGAGGACCATGGCCAGTTAAAAAGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAGGAAGCAGAGAGCCCCCAGTGAGGACCATGGCCAGTTAAAAAGC  200

seq1  AGGCAGGCAGGCAGGCAGGCAGGTACGCAGACAGACAGACAGACAGACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGCAGGCAGGCAGGCAGGTACGCAGACAGACAGACAGACAGACAA  250

seq1  ATGCAAATGTGACAGGCAGTTGGAGGTCAAGAAGAGAGTCACAGCCTGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAATGTGACAGGCAGTTGGAGGTCAAGAAGAGAGTCACAGCCTGGC  300

seq1  TCCCAGGCATCCCTTGGCTTCATAGGACAGTTCTCTTCTTAAGTATCATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGGCATCCCTTGGCTTCATAGGACAGTTCTCTTCTTAAGTATCATT  350

seq1  TATTCTTTGAGAATCTCATGCATACATACTGTGTATCTCTGTTAGTCATA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTGAGAATCTCATGCATACATACTGTGTATCTCTGTTAGTCATA  400

seq1  TTCATACACATCCCTTCCCTTCTCTCAACTATGGAATCCCCCTACGCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATACACATCCCTTCCCTTCTCTCAACTATGGAATCCCCCTACGCCCT  450

seq1  CTTCCCAACCTGACGTCCAGTGTTTTGTTTTGTTTAATAACAGTCCCGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCCAACCTGACGTCCAGTGTTTTGTTTTGTTTAATAACAGTCCCGTG  500

seq1  TATCCATGAGTGTGCAGCCATATACTGGGGCCTGGTCCATCTACCAGGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCATGAGTGTGCAGCCATATACTGGGGCCTGGTCCATCTACCAGGGG  550

seq1  CCACACCCTAAAGAAAAGCTGACTGTCTTTCCCCTAGTAGCTACCAGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCCTAAAGAAAAGCTGACTGTCTTTCCCCTAGTAGCTACCAGTTG  600

seq1  TCAGCACTGCTTCTCAACTAGGGGTGGGAGGCTCACGTGCCCCTCCTGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCACTGCTTCTCAACTAGGGGTGGGAGGCTCACGTGCCCCTCCTGCT  650

seq1  CCAAGCTGGACCCTGGCTGGCCTGATCCTATGTGGCTCTTATATATACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTGGACCCTGGCTGGCCTGATCCTATGTGGCTCTTATATATACAG  700

seq1  TCTCAGCCTCTACAGAGTTCAGAAGTACAAGGGTCTTGTCGTGTCCTAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCCTCTACAGAGTTCAGAAGTACAAGGGTCTTGTCGTGTCCTAGA  750

seq1  GAATACCCAACCCTATTTCTTAGACTCTTTCTGTTCCCTCTTCCACCATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATACCCAACCCTATTTCTTAGACTCTTTCTGTTCCCTCTTCCACCATG  800

seq1  TTCCATGGACCCTGGGGGGATTGGTGTGATATTGATGTCCCATTTTTGGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATGGACCCTGGGGGGATTGGTGTGATATTGATGTCCCATTTTTGGC  850

seq1  TGAGCCCTTTCTAGAAACCAGTTCTGTGCAGC-AAATAATCCCTTAAAAG  899
      |||||||||||||||||||||||||||||||| ||||||| |||||||||
seq2  TGAGCCCTTTCTAGAAACCAGTTCTGTGCAGCAAAATAAT-CCTTAAAAG  899

seq1  CTCCACACCTAGAAGTCTTCCAATTAGATCTCACTTGCTTTAATAGTAAA  949
      ||||||| ||||||||  | ||||||||||||||||||||| ||||||||
seq2  CTCCACA-CTAGAAGTTCTTCAATTAGATCTCACTTGCTTT-ATAGTAAA  947

seq1  TCCTCACCAAAGAAAGCGTCAGGGCACATGTTGCTTACATTCAAAAAAAT  999
      |||||| ||||||||||||||||||||||| |||||||||    ||||||
seq2  TCCTCA-CAAAGAAAGCGTCAGGGCACATG-TGCTTACAT---CAAAAAT  992

seq1  GT-GGACAATGTAAAGATAATTTGAGTCTCATGTTTTACAGC-TCTGTCA  1047
      || |||  ||||||   | ||||||||||||||||||| ||| |||||| 
seq2  GTGGGAACATGTAA--GTTATTTGAGTCTCATGTTTTA-AGCTTCTGTC-  1038

seq1  ACCTGACTTGTAAAGCAACTTACATGCTTTCGTCTTCTGCCTTACATATG  1097
      ||||||||||| ||||||| ||||||| ||||||||||||||||   |||
seq2  ACCTGACTTGT-AAGCAAC-TACATGC-TTCGTCTTCTGCCTTAACAATG  1085

seq1  CACAGTTATATCAGTAGTGTTTTCTTGTTGTGAAGTAGGCTTATTTCTAT  1147
      ||||| |||||||||||||||| |||||| ||||  ||||||||||| ||
seq2  CACAG-TATATCAGTAGTGTTTCCTTGTT-TGAA-AAGGCTTATTTC-AT  1131

seq1  TGAGAAATTT  1157
      ||| ||||||
seq2  TGA-AAATTT  1140