BAC Information

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BAC

Clone NameB6Ng01-094G22
Chromosome3 (Build37)
Map Location 94,269,770 - 94,396,650
singlet/doubletdoublet
Overlap gene2310007A19Rik, Tnrc4, Snx27, LOC100043228
Upstream geneTchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403
Downstream geneEG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, Ctss, LOC100043312, Hormad1, Golph3l
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094G22.bB6Ng01-094G22.g
ACCDH905657DH905658
length1,000624
definitionDH905657|Mus musculus domesticus DNA, BAC clone: B6Ng01-094G22, 5' end.DH905658|Mus musculus domesticus DNA, BAC clone: B6Ng01-094G22, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(94,395,894 - 94,396,650)(94,269,770 - 94,270,393)
sequence
gaattccaggccagccagtctacacagagaaactatgccagtaaatacat
ttaaaaataaattagttaaacatgaaacctgactgaggatctgaggaaag
ggggttgggaggatagaacaaaagtacaaggctgggaaaaagcaatggga
gatgctgggacgtgcttatcttcatgggtaaaggccggtgaggttcagca
tagagggctgttagagacaaccatgaactaatagtttttgagcttagcat
aattcttttgctttggatcttgagcatctatcatggctttccctatgtag
ttcaggttatcctgaatcatgttgtatagatcaggctggcacaaactcac
agaggtccacctgcctctgcctcctgataaagtctctcattatgttaagt
tatatataacacagattttccatttagccaattttaagtgtgtggttgtg
gcattattttcacagtgttgtgcaaccaccccacctcacccatctccaga
gttcttccatctttcccaatgtaaactctgtacctattaaaattccttct
agcttctttgtccctcaagtgcttgtgactgccattctactttctgtcca
caccacatacaaaaataatcacatactataccttggatttgtatactata
atttttatattgtctttcataactagctaatatcattcagcatcatcttc
aaggtttaccctgttatagaatgcatttctttttttttttttaaattaaa
ctaggggctggtgagatggcttagtgggtaagagcactgactgctcttct
cgaaggtcctgaggtcaatcccagaaaccacatgggtgggctcacaacca
ccccttaatgagatctgacatcctcttctggtgtgtctgaagttcagcta
cagtatatttatgcatacaaataataatctttttttaaagagtaaaaaaa
ctattttctaagaattgccttgcatctgggcgggggaggtgcaagtgcag

gaattctgctgggaagtcttggatccgtgaaatagtctgggacgaaaatc
agaacaacgcaatcatcaatgctgaaggggaaagcctgggcgacagctta
ctctgctaaaacatcggatgctttgtcctagcagggctcactggtggtcc
ccactttacaacacaatctcggtgcctgtactgtccctggcagccatccc
catgagtgccaggaaaccatcctaggtaaggcctgtgcatgttgcccagg
ctttctgctcttggcccacctgaagctccgggagccaccaaggcctccca
gatcctgagtgttctgcccctggtccatttaggacctgccctccactcag
tttgccatgcaggccttttcagagaacgccctctcctgggagagccaggc
tcacagcgtgatgacggaagatgatttttacaccaggaagaatgtgagtc
acagtgcatctgctgtggcagggaaggcctgctcagaatactgtgggctc
ccagggttaactgcacccaagacaccagccacagctccccactctatatt
gtttgaccggaagccatctctgcagccaagtccattaaaatcacctgggg
agtcttcagaaccttggctgcccc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_94395894_94396650
seq2: B6Ng01-094G22.b_290_1049 (reverse)

seq1  CTGCACTTGCACCACCACCGCCCAGCTGCAGGGC-ACTCTTATGAAAAAT  49
      ||||||||||||| || |||||||| |||| ||| | |||||   |||||
seq2  CTGCACTTGCACCTCCCCCGCCCAGATGCAAGGCAATTCTTA--GAAAAT  48

seq1  AGTTTTTTTATCTTTTTAAAAAAGATTTATTTATTGTTATGCATAAATAT  99
      ||||||||||   ||| ||||||||||   |||||  |||||||||||||
seq2  AGTTTTTTTACTCTTTAAAAAAAGATT--ATTATTTGTATGCATAAATAT  96

seq1  ACTGTAGCTG-ACTTCAGACACACCAGAAGAGGGTGTCAGATCTCATTAA  148
      |||||||||| |||||||||||||||||||||| ||||||||||||||||
seq2  ACTGTAGCTGAACTTCAGACACACCAGAAGAGGATGTCAGATCTCATTAA  146

seq1  -GGGTGGTTGTGAGCC--ACCATGTGGTTTCTGGGATTTGAACTCAGGAC  195
       |||||||||||||||   ||||||||||||||||| |||| ||||||||
seq2  GGGGTGGTTGTGAGCCCACCCATGTGGTTTCTGGGA-TTGACCTCAGGAC  195

seq1  CTTCG-GAAGAGCAGTCAGTGCTCTTACCCACTGAGCCATCTCACCAG-C  243
      ||||| ||||||||||||||||||||||||||| |||||||||||||| |
seq2  CTTCGAGAAGAGCAGTCAGTGCTCTTACCCACTAAGCCATCTCACCAGCC  245

seq1  CCTAGTTTAATTT-AAAAAAAAAAAAGAAATGCATTCTATAACAGGGTAA  292
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCTAGTTTAATTTAAAAAAAAAAAAAGAAATGCATTCTATAACAGGGTAA  295

seq1  ACCTTGAAGATGATGCTGAATGATATTAGCTAGTTATGAAAGACAATATA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGAAGATGATGCTGAATGATATTAGCTAGTTATGAAAGACAATATA  345

seq1  AAAATTATAGTATACAAATCCAAGGTATAGTATGTGATTATTTTTGTATG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATAGTATACAAATCCAAGGTATAGTATGTGATTATTTTTGTATG  395

seq1  TGGTGTGGACAGAAAGTAGAATGGCAGTCACAAGCACTTGAGGGACAAAG  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGGACAGAAAGTAGAATGGCAGTCACAAGCACTTGAGGGACAAAG  445

seq1  AAGCTAGAAGGAATTTTAATAGGTACAGAGTTTACATTGGGAAAGATGGA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAGAAGGAATTTTAATAGGTACAGAGTTTACATTGGGAAAGATGGA  495

seq1  AGAACTCTGGAGATGGGTGAGGTGGGGTGGTTGCACAACACTGTGAAAAT  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTCTGGAGATGGGTGAGGTGGGGTGGTTGCACAACACTGTGAAAAT  545

seq1  AATGCCACAACCACACACTTAAAATTGGCTAAATGGAAAATCTGTGTTAT  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCACAACCACACACTTAAAATTGGCTAAATGGAAAATCTGTGTTAT  595

seq1  ATATAACTTAACATAATGAGAGACTTTATCAGGAGGCAGAGGCAGGTGGA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATAACTTAACATAATGAGAGACTTTATCAGGAGGCAGAGGCAGGTGGA  645

seq1  CCTCTGTGAGTTTGTGCCAGCCTGATCTATACAACATGATTCAGGATAAC  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGTGAGTTTGTGCCAGCCTGATCTATACAACATGATTCAGGATAAC  695

seq1  CTGAACTACATAGGGAAAGCCATGATAGATGCTCAAGATCCAAAGCAAAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAACTACATAGGGAAAGCCATGATAGATGCTCAAGATCCAAAGCAAAA  745

seq1  GAATTATGCTAAGCT  757
      |||||||||||||||
seq2  GAATTATGCTAAGCT  760

seq1: chr3_94269770_94270393
seq2: B6Ng01-094G22.g_67_690

seq1  GAATTCTGCTGGGAAGTCTTGGATCCGTGAAATAGTCTGGGACGAAAATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGCTGGGAAGTCTTGGATCCGTGAAATAGTCTGGGACGAAAATC  50

seq1  AGAACAACGCAATCATCAATGCTGAAGGGGAAAGCCTGGGCGACAGCTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAACGCAATCATCAATGCTGAAGGGGAAAGCCTGGGCGACAGCTTA  100

seq1  CTCTGCTAAAACATCGGATGCTTTGTCCTAGCAGGGCTCACTGGTGGTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGCTAAAACATCGGATGCTTTGTCCTAGCAGGGCTCACTGGTGGTCC  150

seq1  CCACTTTACAACACAATCTCGGTGCCTGTACTGTCCCTGGCAGCCATCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTTTACAACACAATCTCGGTGCCTGTACTGTCCCTGGCAGCCATCCC  200

seq1  CATGAGTGCCAGGAAACCATCCTAGGTAAGGCCTGTGCATGTTGCCCAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAGTGCCAGGAAACCATCCTAGGTAAGGCCTGTGCATGTTGCCCAGG  250

seq1  CTTTCTGCTCTTGGCCCACCTGAAGCTCCGGGAGCCACCAAGGCCTCCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGCTCTTGGCCCACCTGAAGCTCCGGGAGCCACCAAGGCCTCCCA  300

seq1  GATCCTGAGTGTTCTGCCCCTGGTCCATTTAGGACCTGCCCTCCACTCAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGAGTGTTCTGCCCCTGGTCCATTTAGGACCTGCCCTCCACTCAG  350

seq1  TTTGCCATGCAGGCCTTTTCAGAGAACGCCCTCTCCTGGGAGAGCCAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCCATGCAGGCCTTTTCAGAGAACGCCCTCTCCTGGGAGAGCCAGGC  400

seq1  TCACAGCGTGATGACGGAAGATGATTTTTACACCAGGAAGAATGTGAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAGCGTGATGACGGAAGATGATTTTTACACCAGGAAGAATGTGAGTC  450

seq1  ACAGTGCATCTGCTGTGGCAGGGAAGGCCTGCTCAGAATACTGTGGGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTGCATCTGCTGTGGCAGGGAAGGCCTGCTCAGAATACTGTGGGCTC  500

seq1  CCAGGGTTAACTGCACCCAAGACACCAGCCACAGCTCCCCACTCTATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTTAACTGCACCCAAGACACCAGCCACAGCTCCCCACTCTATATT  550

seq1  GTTTGACCGGAAGCCATCTCTGCAGCCAAGTCCATTAAAATCACCTGGGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGACCGGAAGCCATCTCTGCAGCCAAGTCCATTAAAATCACCTGGGG  600

seq1  AGTCTTCAGAACCTTGGCTGCCCC  624
      ||||||||||||||||||||||||
seq2  AGTCTTCAGAACCTTGGCTGCCCC  624