BAC Information

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BAC

Clone NameB6Ng01-094L20
Chromosome3 (Build37)
Map Location 55,573,304 - 55,706,274
singlet/doubletdoublet
Overlap geneMab21l1, 4933417G07Rik
Upstream geneSmad9, Rfxap, LOC545524, 6030405A18Rik, Ccna1, 4931419H13Rik, Spg20, A730037C10Rik, Sohlh2, Dclk1
Downstream geneLOC100040139
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094L20.bB6Ng01-094L20.g
ACCDH905876DH905877
length1,0761,152
definitionDH905876|Mus musculus domesticus DNA, BAC clone: B6Ng01-094L20, 5' end.DH905877|Mus musculus domesticus DNA, BAC clone: B6Ng01-094L20, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,705,177 - 55,706,274)(55,573,304 - 55,574,495)
sequence
gaattctttcaaatttcaaagcagaagtaacacaaatttttattaaccca
aacagcatggtagtgacacaaaacatacacgtaactcagttgactggaat
agaagatccaaaaagaaatttatagttccagccacataacttttgagaaa
cacaccgaaacatacatagaaagacagcctctacttgaaatctgtgtgtt
ccagtatgaaactggatcccttttccatgcaaaaaaagaaaattcaaaat
caattaataccttaatgtaggacctgaaacttaaaggaaaatgtgggaaa
ctcctttagaaataggcatagaaaaggattttgtcaatgctatccctgtt
tcggccaacagtaaatggatgtgatctcatgaaacagttaatgaaacaaa
gaggcatcatatggaatatgatcagtaaatagcgtaatgaaatgaccaga
cagttcttaaaatatgagcaaataaacatgaactttttggaattggctaa
aaaatagatacaaatataaaattttgataatgtctataaaattgcccagt
tctgagagctcaggggaagctctaatagtaaaagattgcaaagaaaatgt
aaggactgtctaccattcaccagtaacattctaaacgtcagtgacttcta
cccaaattgaattttaaataccagtgcaactttttacatgcatccatata
tagactttttcctgggctgtcaaacatatctccctttttctctttgaggt
caagcccagggcaagtcagctctgaccattaggtccccatcagtcctact
cacgtgtcaaaattctccacgtacagatacttcttaattaggtgggctgc
cacagcttgtggaaactctgcataacaagaaaaacaagtcattaaggact
aattctcacaaagagcctgggggaaaagttaggcacaactgaacatttgc
cagactctaccctgacttttatattcatatgtcgtacttatatttaatat
tttcatattttatatgtgcatggacagtgacagtctaatatataaaagca
ttttcatgtgttctacaaacacatct
gaattcttgggcatcaggcaagagcatgggaataaatcacttagagaatt
agctctgttccaggcttcattagttctaattatcccccaaatatgctcag
cagaatgtgcgtgggtctgctgggactgacgcacaatagagcaggcacca
tataaactcctctgagcacagagagagttcataaaacaactgagacactc
cttactgcagaagccaccagatgagacagacagggcagctccaagacaca
cagcaacaagacaaagctcaggcacactgtctttatgttctgttacccaa
acatcacagcaatgatcaggagcacccccccccgccccgcccccaagata
ccaatttcacttgactcaagtctggtggtacacacagcaatcccagcact
agtgaagcagaggcaggcagatctcttgtgaatccaaggcaaaccaagtc
tacataatgagtttcaggacagccagggctacacagagagactgtttcaa
aaataaataaaaagaaataacagtaatttcattttattattgggagtttg
gcaaataaaaacgtgaactttttcttaacagaaaattaggatttaaaatt
aagtaatagtcatagaaagtgaatataaatttcttcctttaaaaaacaca
cacaaaaaactagagacatggattatattttgcattttattacaatgctt
acttaactgtttcctactacttaatcatccacgcgggcatggtagtgcac
gcctttaatcccagcactcgggaggcagaggcaggcagatttctgagttc
gaggccagcccttgtctacaaagtgagttccaggacagccaggccagggc
tacaagagaaaccctgtctgaaaaaaccaaaaaccaaaaaccaaaaaaaa
aaaaaaaaaaaccttccaaaaaaccaacaacaacaaaaacaaacaccccc
cgccccacaacaacaacaaaagaaagctattatcatccaatgttttttct
tcaacactcagccactgaagcctctgctctctttccttacatcaactctg
gcatggtggtagccactcagcattgcactcagaaaatattccagttcaga
ggtctgactggactaattgcagtcttgctcacctaacctgatgacctgac
at
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_55705177_55706274
seq2: B6Ng01-094L20.b_48_1123 (reverse)

seq1  AGATGTG-TTGTAAGGAACACATTTGAAAAATGCTTTTTATATATTAAGA  49
      ||||||| |||||  ||||||||    ||||||| ||||||||||| |||
seq2  AGATGTGTTTGTA--GAACACAT---GAAAATGC-TTTTATATATT-AGA  43

seq1  CTGTCAACTGTCCATGCACAATATAAAATTATGAAAAATATAAATATAAA  99
      ||||| ||||||||||||| |||||||| ||||||||   ||||||||| 
seq2  CTGTC-ACTGTCCATGCAC-ATATAAAA-TATGAAAATATTAAATATAA-  89

seq1  GTTACGAACAATATGAATATAAAAGGTCAGGGGTAGAAGTCCTGGCAAAT  149
        |||||   |||||||||||||| |||| |||||| ||| |||||||||
seq2  -GTACGA--CATATGAATATAAAA-GTCA-GGGTAG-AGT-CTGGCAAAT  132

seq1  GTTCAGTTGTTGCCTAACTTTTTCCCCCAGGCTTCTTTTGTGAGAATTAG  199
      ||||||||| |||||||| ||||||||||||||   ||||||||||||||
seq2  GTTCAGTTG-TGCCTAAC-TTTTCCCCCAGGCT--CTTTGTGAGAATTAG  178

seq1  TCCTTAATGACTTGTTTTTTCTTGTTATGCAGAGTTTCCACAAGCTGTGG  249
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCCTTAATGACTTG-TTTTTCTTGTTATGCAGAGTTTCCACAAGCTGTGG  227

seq1  CAGCCCACCTAATTAAGAAGTATCTGTACGTGGAGAATTTTGACACCTGA  299
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CAGCCCACCTAATTAAGAAGTATCTGTACGTGGAGAATTTTGACACGTGA  277

seq1  GTAGGACTGATGGGGACCTAATGGTCAGAGCTGACTTGCCCTGGGCTTGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGACTGATGGGGACCTAATGGTCAGAGCTGACTTGCCCTGGGCTTGA  327

seq1  CCTCAAAGAGAAAAAGGGAGATATGTTTGACAGCCCAGGAAAAAGTCTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAGAGAAAAAGGGAGATATGTTTGACAGCCCAGGAAAAAGTCTAT  377

seq1  ATATGGATGCATGTAAAAAGTTGCACTGGTATTTAAAATTCAATTTGGGT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGATGCATGTAAAAAGTTGCACTGGTATTTAAAATTCAATTTGGGT  427

seq1  AGAAGTCACTGACGTTTAGAATGTTACTGGTGAATGGTAGACAGTCCTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGTCACTGACGTTTAGAATGTTACTGGTGAATGGTAGACAGTCCTTA  477

seq1  CATTTTCTTTGCAATCTTTTACTATTAGAGCTTCCCCTGAGCTCTCAGAA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTCTTTGCAATCTTTTACTATTAGAGCTTCCCCTGAGCTCTCAGAA  527

seq1  CTGGGCAATTTTATAGACATTATCAAAATTTTATATTTGTATCTATTTTT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCAATTTTATAGACATTATCAAAATTTTATATTTGTATCTATTTTT  577

seq1  TAGCCAATTCCAAAAAGTTCATGTTTATTTGCTCATATTTTAAGAACTGT  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCCAATTCCAAAAAGTTCATGTTTATTTGCTCATATTTTAAGAACTGT  627

seq1  CTGGTCATTTCATTACGCTATTTACTGATCATATTCCATATGATGCCTCT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCATTTCATTACGCTATTTACTGATCATATTCCATATGATGCCTCT  677

seq1  TTGTTTCATTAACTGTTTCATGAGATCACATCCATTTACTGTTGGCCGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTCATTAACTGTTTCATGAGATCACATCCATTTACTGTTGGCCGAA  727

seq1  ACAGGGATAGCATTGACAAAATCCTTTTCTATGCCTATTTCTAAAGGAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGATAGCATTGACAAAATCCTTTTCTATGCCTATTTCTAAAGGAGT  777

seq1  TTCCCACATTTTCCTTTAAGTTTCAGGTCCTACATTAAGGTATTAATTGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCACATTTTCCTTTAAGTTTCAGGTCCTACATTAAGGTATTAATTGA  827

seq1  TTTTGAATTTTCTTTTTTTGCATGGAAAAGGGATCCAGTTTCATACTGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAATTTTCTTTTTTTGCATGGAAAAGGGATCCAGTTTCATACTGGA  877

seq1  ACACACAGATTTCAAGTAGAGGCTGTCTTTCTATGTATGTTTCGGTGTGT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACAGATTTCAAGTAGAGGCTGTCTTTCTATGTATGTTTCGGTGTGT  927

seq1  TTCTCAAAAGTTATGTGGCTGGAACTATAAATTTCTTTTTGGATCTTCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAAAGTTATGTGGCTGGAACTATAAATTTCTTTTTGGATCTTCTA  977

seq1  TTCCAGTCAACTGAGTTACGTGTATGTTTTGTGTCACTACCATGCTGTTT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGTCAACTGAGTTACGTGTATGTTTTGTGTCACTACCATGCTGTTT  1027

seq1  GGGTTAATAAAAATTTGTGTTACTTCTGCTTTGAAATTTGAAAGAATTC  1098
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAATAAAAATTTGTGTTACTTCTGCTTTGAAATTTGAAAGAATTC  1076

seq1: chr3_55573304_55574495
seq2: B6Ng01-094L20.g_68_1219

seq1  GAATTCTTGGGCATCAGGCAAGAGCATGGGAATAAATCACTTAGAGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTGGGCATCAGGCAAGAGCATGGGAATAAATCACTTAGAGAATT  50

seq1  AGCTCTGTTCCAGGCTTCATTAGTTCTAATTATCCCCCAAATATGCTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCTGTTCCAGGCTTCATTAGTTCTAATTATCCCCCAAATATGCTCAG  100

seq1  CAGAATGTGCGTGGGTCTGCTGGGACTGACGCACAATAGAGCAGGCACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGTGCGTGGGTCTGCTGGGACTGACGCACAATAGAGCAGGCACCA  150

seq1  TATAAACTCCTCTGAGCACAGAGAGAGTTCATAAAACAACTGAGACACTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTCCTCTGAGCACAGAGAGAGTTCATAAAACAACTGAGACACTC  200

seq1  CTTACTGCAGAAGCCACCAGATGAGACAGACAGGGCAGCTCCAAGACACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGCAGAAGCCACCAGATGAGACAGACAGGGCAGCTCCAAGACACA  250

seq1  CAGCAACAAGACAAAGCTCAGGCACACTGTCTTTATGTTCTGTTACCCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAACAAGACAAAGCTCAGGCACACTGTCTTTATGTTCTGTTACCCAA  300

seq1  ACATCACAGCAATGATCAGGAGCACCCCCCCCCGCCCCGCCCCCAAGATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCACAGCAATGATCAGGAGCACCCCCCCCCGCCCCGCCCCCAAGATA  350

seq1  CCAATTTCACTTGACTCAAGTCTGGTGGTACACACAGCAATCCCAGCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATTTCACTTGACTCAAGTCTGGTGGTACACACAGCAATCCCAGCACT  400

seq1  AGTGAAGCAGAGGCAGGCAGATCTCTTGTGAATCCAAGGCAAACCAAGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGCAGAGGCAGGCAGATCTCTTGTGAATCCAAGGCAAACCAAGTC  450

seq1  TACATAATGAGTTTCAGGACAGCCAGGGCTACACAGAGAGACTGTTTCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATAATGAGTTTCAGGACAGCCAGGGCTACACAGAGAGACTGTTTCAA  500

seq1  AAATAAATAAAAAGAAATAACAGTAATTTCATTTTATTATTGGGAGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAATAAAAAGAAATAACAGTAATTTCATTTTATTATTGGGAGTTTG  550

seq1  GCAAATAAAAACGTGAACTTTTTCTTAACAGAAAATTAGGATTTAAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAATAAAAACGTGAACTTTTTCTTAACAGAAAATTAGGATTTAAAATT  600

seq1  AAGTAATAGTCATAGAAAGTGAATATAAATTTCTTCCTTTAAAAAACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTAATAGTCATAGAAAGTGAATATAAATTTCTTCCTTTAAAAAACACA  650

seq1  CACAAAAAACTAGAGACATGGATTATATTTTGCATTTTATTACAATGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAACTAGAGACATGGATTATATTTTGCATTTTATTACAATGCTT  700

seq1  ACTTAACTGTTTCCTACTACTTAATCATCCACGCGGGCATGGTAGTGCAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTAACTGTTTCCTACTACTTAATCATCCACGCGGGCATGGTAGTGCAC  750

seq1  GCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTAATCCCAGCACTCGGGAGGCAGAGGCAGGCAGATTTCTGAGTTC  800

seq1  GAGGCCAG-CCTTGTCTACAAAGTGAGTTCCAGGACAGCCAGGCCAGGGC  849
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCCAGCCCTTGTCTACAAAGTGAGTTCCAGGACAGCCAGGCCAGGGC  850

seq1  TACAAAGAGAAACCCTGTCTTGAAAAAACCAAAAACCAAAAACC-AAAAA  898
      ||| ||||||||||||||| |||||||||||||||||||||||| |||||
seq2  TAC-AAGAGAAACCCTGTC-TGAAAAAACCAAAAACCAAAAACCAAAAAA  898

seq1  AAAAAAAAAAAAACCTCCAAAAAAACCAAACCAAACCAAACCAAAAAACA  948
      |||||||||||||||| | ||||||||||  |||  |||    |||||||
seq2  AAAAAAAAAAAAACCTTCCAAAAAACCAA--CAA--CAA---CAAAAACA  941

seq1  AAACAACCCCCCGCCCCCACAAACAAACAAACAAAAAAGAAAGCTATTTA  998
      ||   ||||||||||||     || |||||  | ||||||||||||||  
seq2  AA--CACCCCCCGCCCC-----AC-AACAACAACAAAAGAAAGCTATT--  981

seq1  ATCATCCAATGTTTTTTCTTTCAAACAACTCAGCCCACTGGAGGCCCTCT  1048
      |||||||||||||||||| |||||   |||||| |||||| ||  |||||
seq2  ATCATCCAATGTTTTTTC-TTCAA--CACTCAG-CCACTGAAG--CCTCT  1025

seq1  GGCTCTCTTTCTCTTTACCATCCAACTCTGGCATGGTGGGTAGCCAACTC  1098
       |||||||||| |||   ||| ||||||||||||||| ||||||| ||||
seq2  -GCTCTCTTTC-CTT--ACAT-CAACTCTGGCATGGT-GGTAGCC-ACTC  1068

seq1  AAGCATTGCACTTCCAAGAAAATAATTCAGTTCAAGAGTCCTGACTGGAG  1148
       |||||||||||    |||||||| | |||||| ||||  |||||||  |
seq2  -AGCATTGCACT---CAGAAAATATTCCAGTTC-AGAGGTCTGACTG--G  1111

seq1  ACTAAATTTGCAGTCTTGCTCACCCCAAACCTGATGA-CTGACAT  1192
      |||||  |||||||||||||||  || |||||||||| |||||||
seq2  ACTAA--TTGCAGTCTTGCTCA--CCTAACCTGATGACCTGACAT  1152