BAC Information

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BAC

Clone NameB6Ng01-094N05
Chromosome3 (Build37)
Map Location 92,783,706 - 92,784,804
singlet/doubletsinglet
Overlap genenone
Upstream genePglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp, Lce1l, 2310050C09Rik, Lce3a, Lce3b, Lce3c, LOC630994, 2310001H18Rik
Downstream geneLce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346, Tdpoz5, EG668353
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094N05.bB6Ng01-094N05.g
ACCDH905937DH905938
length1,2031,088
definitionDH905937|Mus musculus domesticus DNA, BAC clone: B6Ng01-094N05, 5' end.DH905938|Mus musculus domesticus DNA, BAC clone: B6Ng01-094N05, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttatatatattggatattagtcccctatctgatttaggatagg
taaagatcctttcccaatctgttggtggcctttttgtcttattgatggtg
tcttttgccttgcagaagctttgcaattttatgaggtcccatttatcgat
tctcgatcttacagcacaagccactgctgttctattcaggaatatccccc
ctgtacccatatctttgaggctcttccctactttctcctctataagtttc
agtgtctctggttttatgtggagttccttaatccacttagatttgacctt
agtacaaggatataagaatggatcaattcgcattcttctacatggtaacc
accagttgtaccagcaccatttgttgaaaatgctatctcttttccactgg
atgaattttgctcccttgtcaaagatcaagtgaccataggtgtgtgggtt
catttctgggtcttcaattctattccattggtctacttgtctgtcgctat
actagtaccatgcagtttttatcacaattgctctgtagtaaagctttagg
tcaggcatggtgattccaccagaggttcttttatacttgagaagaatttt
tgctatcctaggttttttgttattccagattaatttgcagattgcccttt
ctaattcattgaagaattgagttggaattttgatggggaatgcattgaat
ctgtagattgcttttggcaagatagccatttttactgtattggtcctgcc
aatccatgagcatgggagatctttccatcttctgagatcttctttaattt
ctttcttcagagacttgaagttcttatcatacagatctttcacttcctta
gttagagtcaaagtaaatggtgagaagctggaagcatcccactaaaatca
gggactagacaagctgcccactttctccctacctattcaacattgtactt
gaagtcctagccaaagcaattcgacacaaaaggagatcgaggggaaacaa
attagaaagaggagtcaaaatcacctttttgcagaatgatattggatagt
atatataagtgacctaaaattccacccagagaactctagctgaataacag
cttcagtgcgagtgctggattaaaataatctcacagtcaaatggccttct
tgttcaaagatataacaggcttgagaagaaattagggtacagccaccctc
tcc
gaattctttctatcagaatactttgctctctcatccactccccttccaaa
ctgctgtgatatgggatgtggacagtgagttacaggcaactaggcatctc
catgtagtgctggatctttgtcaacagtgtgagaacaaactgagggccca
atagacatccataaaatgtaattattttaatagtagatattgtctccaaa
attaaaatgacatacagggaaaatatgtactattctgtttagataaactc
accaaagaactactggtgtcatggttagttacttatagtatttatccagt
cttgcagctaattactctgaggttaatcactccaaaagaatgtgtgtcac
attctaccctgaattctactgtcagggaccagacatggtccttactagcc
acatactatttattgcctaagcagaggacatagctaaatgtcagggctcc
ctgacctattgtctatgcttctccctgttatcagaataatttaggagttg
gtatgtttgattctattacacttcctcacatccctactccttggtgcatc
agagtcgctcttctgtccaccagatcttctgatgcccatgaaatttgatg
aatgtttagcttgagactgttcttgcattggaaatactgggaagaccagg
ccagcatctctcagagaaaaagaagcagagggtgtggagggagggcagca
ggaaggcaacggagtgatgagcaccttggtggctgattcaggtgttctgt
cactacaaaggtcacagtctcaaccacctctgtgttctttatgtttgttt
tctcaaagatttgctcatcctgccagacctcctccaggaagccttcccct
gacaggtttaatctcatctcagattatacagaaatagagagtcagtagcc
ttttatagcagagaccaaaagtggtggaggggatctttctctgatgagat
tattttgtttcttctgacattttctggtcaaaacagagctactctatgaa
cccgtagagaagacatatttggcaagctcttatgcttcaagcttgtttga
ttctagggtccgtaactccccccagaactctgcaagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_92783706_92784804
seq2: B6Ng01-094N05.g_68_1155

seq1  GAATTCTTTCTATCAGAATACTTTGCTCTCTCATCCACTCCCCTTCCAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTATCAGAATACTTTGCTCTCTCATCCACTCCCCTTCCAAA  50

seq1  CTGCTGTGATATGGGATGTGGACAGTGAGTTACAGGCAACTAGGCATCTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGTGATATGGGATGTGGACAGTGAGTTACAGGCAACTAGGCATCTC  100

seq1  CATGTAGTGCTGGATCTTTGTCAACAGTGTGAGAACAAACTGAGGGCCCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTAGTGCTGGATCTTTGTCAACAGTGTGAGAACAAACTGAGGGCCCA  150

seq1  ATAGACATCCATAAAATGTAATTATTTTAATAGTAGATATTGTCTCCAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGACATCCATAAAATGTAATTATTTTAATAGTAGATATTGTCTCCAAA  200

seq1  ATTAAAATGACATACAGGGAAAATATGTACTATTCTGTTTAGATAAACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAATGACATACAGGGAAAATATGTACTATTCTGTTTAGATAAACTC  250

seq1  ACCAAAGAACTACTGGTGTCATGGTTAGTTACTTATAGTATTTATCCAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGAACTACTGGTGTCATGGTTAGTTACTTATAGTATTTATCCAGT  300

seq1  CTTGCAGCTAATTACTCTGAGGTTAATCACTCCAAAAGAATGTGTGTCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCAGCTAATTACTCTGAGGTTAATCACTCCAAAAGAATGTGTGTCAC  350

seq1  ATTCTACCCTGAATTCTACTGTCAGGGACCAGACATGGTCCTTACTAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACCCTGAATTCTACTGTCAGGGACCAGACATGGTCCTTACTAGCC  400

seq1  ACATACTATTTATTGCCTAAGCAGAGGACATAGCTAAATGTCAGGGCTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACTATTTATTGCCTAAGCAGAGGACATAGCTAAATGTCAGGGCTCC  450

seq1  CTGACCTATTGTCTATGCTTCTCCCTGTTATCAGAATAATTTAGGAGTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACCTATTGTCTATGCTTCTCCCTGTTATCAGAATAATTTAGGAGTTG  500

seq1  GTATGTTTGATTCTATTACACTTCCTCACATCCCTACTCCTTGGTGCATC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGTTTGATTCTATTACACTTCCTCACATCCCTACTCCTTGGTGCATC  550

seq1  AGAGTCGCTCTTCTGTCCACCAGATCTTCTGATGCCCATGAAATTTGATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTCGCTCTTCTGTCCACCAGATCTTCTGATGCCCATGAAATTTGATG  600

seq1  AATGTTTAGCTTGAGACTGTTCTTGCATTGGAAATACTGGGAAGACCAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTAGCTTGAGACTGTTCTTGCATTGGAAATACTGGGAAGACCAGG  650

seq1  CCAGCATCTCTCAGAGAAAAAGAAGCAGAGGGTGTGGAGGGAGGGCAGCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCATCTCTCAGAGAAAAAGAAGCAGAGGGTGTGGAGGGAGGGCAGCA  700

seq1  GGAAGGCAACGGAGTGATGAGCACCTTGGTGGCTGATTCAGGTGTTCTGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGGCAACGGAGTGATGAGCACCTTGGTGGCTGATTCAGGTGTTCTGT  750

seq1  CACTACAAAGGTCACAGTCTCAACCACCTCTGTGTTCTTTATGTTTGTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACAAAGGTCACAGTCTCAACCACCTCTGTGTTCTTTATGTTTGTTT  800

seq1  TCTCAAAGATTTGCTCATCCTGCCAGACCTCCTCCAGGAAGCCTTCCCCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAAAGATTTGCTCATCCTGCCAGACCTCCTCCAGGAAGCCTTCCCCT  850

seq1  GACAGGTTTAATCTCATCTCAGATTATACAGAAATAGAGAGTCAGTAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGGTTTAATCTCATCTCAGATTATACAGAAATAGAGAGTCAGTAGCC  900

seq1  TTTTATAGCAGGAGACCAAAAAGTGGTGGAGGGGATCTTTCTCTGATGAG  950
      |||||||||| |||||| ||||||||||||||||||||||||||||||||
seq2  TTTTATAGCA-GAGACC-AAAAGTGGTGGAGGGGATCTTTCTCTGATGAG  948

seq1  ATTAATTTTGTTTCCTTCTGACATTTTCTTGGTTCAAAAACAGAGCTACT  1000
      ||| ||||||||| |||||||||||||| ||||   ||||||||||||||
seq2  ATT-ATTTTGTTT-CTTCTGACATTTTC-TGGT--CAAAACAGAGCTACT  993

seq1  CTATGAAACCCGTCAGAGAAGACATATTGGCCAAAGCTCCTATGCTTCCA  1050
      ||||| ||||||| |||||||||||||| | | |||||| ||||||| ||
seq2  CTATG-AACCCGT-AGAGAAGACATATTTGGC-AAGCTCTTATGCTT-CA  1039

seq1  AGCTTGTATGATTCTAGGGTCGTTAACT-CCCTCAGATACTCTGCCAGCA  1099
      ||||||| |||||||||||||  ||||| ||| |||| ||||||| ||||
seq2  AGCTTGTTTGATTCTAGGGTCCGTAACTCCCCCCAGA-ACTCTGCAAGCA  1088