BAC Information

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BAC

Clone NameB6Ng01-094N08
Chromosome3 (Build37)
Map Location 80,039,504 - 80,171,602
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik, Rxfp1, Tmem144, 1110032E23Rik
Downstream geneEG626797, Gria2, Glrb, EG626841, Pdgfc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-094N08.bB6Ng01-094N08.g
ACCDH905941DH905942
length753904
definitionDH905941|Mus musculus domesticus DNA, BAC clone: B6Ng01-094N08, 5' end.DH905942|Mus musculus domesticus DNA, BAC clone: B6Ng01-094N08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,170,851 - 80,171,602)(80,039,504 - 80,040,408)
sequence
gaattcaattttaaaggcacttataataaaacaatactgaaagagaccat
gtggatccatacaccagactaacgcggggatagggtgtgaatatacaggt
tatgagaatgccaaggttccaggaggttgagtttccttgaaactctttgc
cttgtgagtgcttccaggactctcggcctgtcaaacagacttcactggag
tggacgtagcaaaactatacacagaagcatcaaataataataaccaatac
ttatgctgtaaattcgttacataagtgttagccttcatatagtgtacaaa
ccttggcatttgcttaacaatgatgattatgtaatatatctaaagtacag
aatatacttcttggcatattgaaaagaaatcatcacttccaaaactacaa
ggataaaaactaccaatttagactactcccatgctaatggtaaatttcct
atttctgaaagagtccagaaagtttacaaaagatgtgtcttcctttatca
gatgtactatacaataggtttttggtttggttggttggttggttggtttt
gtcttgtcttgtcttgttttatttttgagtcttgcttagagatgtgctat
ggaagcaaggaaagtgggctctcagtaagttagaaagctggactcctaac
ttgagcaatttttctagaatatctcagtctcttttgactattccatttga
ggcttgctagggtaatctccactcagcaattttatattctaatgtctgtg
tac
gaattctacagataagaactaacgcagcaggggggcagagttgaggaaga
gagattgagaagtggggtttagatatctaatacttgtgacctaactaaca
ctgggatttggaaagaatattgtatttttttccatattcaagtgattgag
atctgcaaatcaacagtccttgtaaacacataaggagtaattcctggtac
ctttgaaaatactttaattagcaaagatgtttttcaggacataatatgtt
tgtggatcatagaaaatcaatccaggattactgaggtatgtattaattga
attctacaagtccttaaaaacagaggtccatttcctagacaaagaagagg
gcacgcaaaagatgcagcagatgggaaccagagattctaaacatcaaaaa
gtattgatatacagatgctggctgaaaaaatacaaggtcatttacaagaa
ttggggaaatatttttgttcctgactgctagggacaagctgcagctgagc
gctcatgttagcttgctattgctgtggcaaaatgccacaacagctctttt
cggggaaaggatttactgtggctgatggattcagaagttcaggccttggt
ctttggctccattgcttttggctctttctggaggtagaaagacctggtag
tggcatatagtgatggaaacctctcacttcttgtccctagaaagcaaaac
tccaaacccattaatttctttatgaattacctcagtgaccttacttgctt
ccaccaggtttcatcctttaaagattctactaccttttactactaccaca
ggctgatgctcatgttattgaacatatgggcttttgggattattctcata
taaactgaggtatgactccctctctctccctctccttctccctcctccct
cgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_80170851_80171602
seq2: B6Ng01-094N08.b_49_801 (reverse)

seq1  GTACACAGACATTAGAATATAAAATTGCTGAGTGGAGATTACCCTAGCAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACACAGACATTAGAATATAAAATTGCTGAGTGGAGATTACCCTAGCAA  50

seq1  GCCTCAAATGGAATAGTC-AAAGAGACTGAGATATTCTAGAAAAATTGCT  99
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCCTCAAATGGAATAGTCAAAAGAGACTGAGATATTCTAGAAAAATTGCT  100

seq1  CAAGTTAGGAGTCCAGCTTTCTAACTTACTGAGAGCCCACTTTCCTTGCT  149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTTAGGAGTCCAGCTTTCTAACTTACTGAGAGCCCACTTTCCTTGCT  150

seq1  TCCATAGCACATCTCTAAGCAAGACTCAAAAATAAAACAAGACAAGACAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAGCACATCTCTAAGCAAGACTCAAAAATAAAACAAGACAAGACAA  200

seq1  GACAAAACCAACCAACCAACCAACCAAACCAAAAACCTATTGTATAGTAC  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAAACCAACCAACCAACCAACCAAACCAAAAACCTATTGTATAGTAC  250

seq1  ATCTGATAAAGGAAGACACATCTTTTGTAAACTTTCTGGACTCTTTCAGA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGATAAAGGAAGACACATCTTTTGTAAACTTTCTGGACTCTTTCAGA  300

seq1  AATAGGAAATTTACCATTAGCATGGGAGTAGTCTAAATTGGTAGTTTTTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGAAATTTACCATTAGCATGGGAGTAGTCTAAATTGGTAGTTTTTA  350

seq1  TCCTTGTAGTTTTGGAAGTGATGATTTCTTTTCAATATGCCAAGAAGTAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGTAGTTTTGGAAGTGATGATTTCTTTTCAATATGCCAAGAAGTAT  400

seq1  ATTCTGTACTTTAGATATATTACATAATCATCATTGTTAAGCAAATGCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTACTTTAGATATATTACATAATCATCATTGTTAAGCAAATGCCA  450

seq1  AGGTTTGTACACTATATGAAGGCTAACACTTATGTAACGAATTTACAGCA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTGTACACTATATGAAGGCTAACACTTATGTAACGAATTTACAGCA  500

seq1  TAAGTATTGGTTATTATTATTTGATGCTTCTGTGTATAGTTTTGCTACGT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATTGGTTATTATTATTTGATGCTTCTGTGTATAGTTTTGCTACGT  550

seq1  CCACTCCAGTGAAGTCTGTTTGACAGGCCGAGAGTCCTGGAAGCACTCAC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCCAGTGAAGTCTGTTTGACAGGCCGAGAGTCCTGGAAGCACTCAC  600

seq1  AAGGCAAAGAGTTTCAAGGAAACTCAACCTCCTGGAACCTTGGCATTCTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAAAGAGTTTCAAGGAAACTCAACCTCCTGGAACCTTGGCATTCTC  650

seq1  ATAACCTGTATATTCACACCCTATCCCCGCGTTAGTCTGGTGTATGGATC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTGTATATTCACACCCTATCCCCGCGTTAGTCTGGTGTATGGATC  700

seq1  CACATGGTCTCTTTCAGTATTGTTTTATTATAAGTGCCTTTAAAATTGAA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGTCTCTTTCAGTATTGTTTTATTATAAGTGCCTTTAAAATTGAA  750

seq1  TTC  752
      |||
seq2  TTC  753

seq1: chr3_80039504_80040408
seq2: B6Ng01-094N08.g_66_969

seq1  GAATTCTACAGATAAGAACTAACGCAGCAGGGGGGCAGAGTTGAGGAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTACAGATAAGAACTAACGCAGCAGGGGGGCAGAGTTGAGGAAGA  50

seq1  GAGATTGAGAAGTGGGGTTTAGATATCTAATACTTGTGACCTAACTAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGAGAAGTGGGGTTTAGATATCTAATACTTGTGACCTAACTAACA  100

seq1  CTGGGATTTGGAAAGAATATTGTATTTTTTTCCATATTCAAGTGATTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTTGGAAAGAATATTGTATTTTTTTCCATATTCAAGTGATTGAG  150

seq1  ATCTGCAAATCAACAGTCCTTGTAAACACATAAGGAGTAATTCCTGGTAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCAAATCAACAGTCCTTGTAAACACATAAGGAGTAATTCCTGGTAC  200

seq1  CTTTGAAAATACTTTAATTAGCAAAGATGTTTTTCAGGACATAATATGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAATACTTTAATTAGCAAAGATGTTTTTCAGGACATAATATGTT  250

seq1  TGTGGATCATAGAAAATCAATCCAGGATTACTGAGGTATGTATTAATTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGATCATAGAAAATCAATCCAGGATTACTGAGGTATGTATTAATTGA  300

seq1  ATTCTACAAGTCCTTAAAAACAGAGGTCCATTTCCTAGACAAAGAAGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTACAAGTCCTTAAAAACAGAGGTCCATTTCCTAGACAAAGAAGAGG  350

seq1  GCACGCAAAAGATGCAGCAGATGGGAACCAGAGATTCTAAACATCAAAAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGCAAAAGATGCAGCAGATGGGAACCAGAGATTCTAAACATCAAAAA  400

seq1  GTATTGATATACAGATGCTGGCTGAAAAAATACAAGGTCATTTACAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGATATACAGATGCTGGCTGAAAAAATACAAGGTCATTTACAAGAA  450

seq1  TTGGGGAAATATTTTTGTTCCTGACTGCTAGGGACAAGCTGCAGCTGAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGAAATATTTTTGTTCCTGACTGCTAGGGACAAGCTGCAGCTGAGC  500

seq1  GCTCATGTTAGCTTGCTATTGCTGTGGCAAAATGCCACAACAGCTCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCATGTTAGCTTGCTATTGCTGTGGCAAAATGCCACAACAGCTCTTTT  550

seq1  CGGGGAAAGGATTTACTGTGGCTGATGGATTCAGAAGTTCAGGCCTTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAAAGGATTTACTGTGGCTGATGGATTCAGAAGTTCAGGCCTTGGT  600

seq1  CTTTGGCTCCATTGCTTTTGGCTCTTTCTGGAGGTAGAAAGACCTGGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGGCTCCATTGCTTTTGGCTCTTTCTGGAGGTAGAAAGACCTGGTAG  650

seq1  TGGCATATAGTGATGGAAACCTCTCACTTCTTGTCCCTAGAAAGCAAAAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCATATAGTGATGGAAACCTCTCACTTCTTGTCCCTAGAAAGCAAAAC  700

seq1  TCCAAACCCATTAATTTCTTTATGAATTACCTCAGTGACCTTACTTGCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAACCCATTAATTTCTTTATGAATTACCTCAGTGACCTTACTTGCTT  750

seq1  CCACCAGGTTTCATCCTTTAAAGATTCTACTACCTTTTACTACTACCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCAGGTTTCATCCTTTAAAGATTCTACTACCTTTTACTACTACCACA  800

seq1  GGCTGATGCTCATGTTATTGAACATATGGGCTTTTGGGATTATTCTCATA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGATGCTCATGTTATTGAACATATGGGCTTTTGGGATTATTCTCATA  850

seq1  TAAACTGAGGTATGACTCCCTCTCTCTCCCTCTCCCTTCTCCCTCCTCCC  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAAACTGAGGTATGACTCCCTCTCTCTCCCTCT-CCTTCTCCCTCCTCCC  899

seq1  TCCCC  905
      || ||
seq2  TCGCC  904