BAC Information

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BAC

Clone NameB6Ng01-095I06
Chromosome3 (Build37)
Map Location 129,702,291 - 129,845,977
singlet/doubletdoublet
Overlap geneSec24b, EG668844, EG668845
Upstream genePitx2, Enpep, LOC100043415, LOC435755, LOC668840, Elovl6, LOC100043758, Egf, Gm421, Rrh, Nola1, Cfi, Pla2g12a, Casp6, Ccdc109b
Downstream geneCol25a1, Agxt2l1, 2310008M10Rik, Rpl34, LOC546811, LOC545568, Lef1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095I06.bB6Ng01-095I06.g
ACCDH906439DH906440
length1,087409
definitionDH906439|Mus musculus domesticus DNA, BAC clone: B6Ng01-095I06, 5' end.DH906440|Mus musculus domesticus DNA, BAC clone: B6Ng01-095I06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(129,702,291 - 129,703,391)(129,845,563 - 129,845,977)
sequence
gaattcttattttataaagttaggtaaatacagcagaatctaacaaaatt
tagcaaaaaaaaaaaaaaaaaaatgtaaaagacaacttcaaatgtatgca
cacgcttatatgcccacatatgaataaaaaaattcttacttgtctaagtt
ttctaataaggactggcataaaactgtcaaatacccagcttccactgcgt
tatgagacacatctaaaacaaacaagtagaccgcgggctgaggaggccgg
agctgtggggaaggaaaacagttggttagcagccgcacttcctttaggcc
ctggtcactatcgtcactgggtcacttactgcacaaaactacatggaacc
taatgagaccagcatggccttcgttatttctcttgtacatttatgtgaga
ttagaacgaaaggcagttgtaatggctaagtatgctaaggggttttgttt
tgttttgttttgttttttaaggaatcttgattaacgtgtcttctaaagta
aaaacatgatgggttattgttatataatgctaacctgtttaaatatttat
ttattcctaaaaaatttatacaattttaaaggttattcacattttttaaa
tttatttgattttattttgtgtgctggagtgtttttgcctacttctaagt
aaacaactctcatgcggtgccctcagaggcttgaagagggcatcggatct
ccgagagctggagttacagacagctgtgagtggccatatgggtgccggga
accaaactctggtcctctgtaaaagcaataaatgcattgacccatttctc
caacccctagaactttaatttttaaattaactttttactttttgctttgt
taggaattaaatctaaggctttgcacatcctagacagattattatcacta
aactacatctccagctcctaatttaacttttttttatttaaaaataaaat
attgtgggctgagagatggctcagcgttaagagcacagactgctctccgg
agtcctgagttcagtccagcaccacatgtagcccatgccatctgtatgga
tcctatgccctctctggtgcatcttgagacgtgacag
agttcccagcgccacatggtggctcacaaccatctgtaactccagtttca
aaggagctgatgtcctcttctggctgtcacaggaccaggtacacaagtgg
tacacagacatacatgcaggaaaatcaatcatacacataaaaataaacaa
atactttgaaaagtactaagtctagagatagggacagagaggtggagaga
cagcaggagagagagagagagagagagagagagagagagagagagagaga
gaacatgatgctaacatcaggacttgggctttgaccaaagtgaggaggca
acttgggagaggaaaaaaaaataaaaaaaaaaaaaaaaccggtctcagca
atgtctgtaaggtaaaggtataatggccttaaaagcctctgtgttggttt
gtatatgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_129702291_129703391
seq2: B6Ng01-095I06.b_46_1132

seq1  GAATTCTTATTTTATAAAGTTAGGTAAATACAGCAGAATCTAACAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATTTTATAAAGTTAGGTAAATACAGCAGAATCTAACAAAATT  50

seq1  TAGCAAAAAAAAAAAAAAAAAAATGTAAAAGACAACTTCAAATGTATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAAAAAAAAAAAAAAAAAAATGTAAAAGACAACTTCAAATGTATGCA  100

seq1  CACGCTTATATGCCCACATATGAATAAAAAAATTCTTACTTGTCTAAGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACGCTTATATGCCCACATATGAATAAAAAAATTCTTACTTGTCTAAGTT  150

seq1  TTCTAATAAGGACTGGCATAAAACTGTCAAATACCCAGCTTCCACTGCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATAAGGACTGGCATAAAACTGTCAAATACCCAGCTTCCACTGCGT  200

seq1  TATGAGACACATCTAAAACAAACAAGTAGACCGCGGGCTGAGGAGGCCGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAGACACATCTAAAACAAACAAGTAGACCGCGGGCTGAGGAGGCCGG  250

seq1  AGCTGTGGGGAAGGAAAACAGTTGGTTAGCAGCCGCACTTCCTTTAGGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTGGGGAAGGAAAACAGTTGGTTAGCAGCCGCACTTCCTTTAGGCC  300

seq1  CTGGTCACTATCGTCACTGGGTCACTTACTGCACAAAACTACATGGAACC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCACTATCGTCACTGGGTCACTTACTGCACAAAACTACATGGAACC  350

seq1  TAATGAGACCAGCATGGCCTTCGTTATTTCTCTTGTACATTTATGTGAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGAGACCAGCATGGCCTTCGTTATTTCTCTTGTACATTTATGTGAGA  400

seq1  TTAGAACGAAAGGCAGTTGTAATGGCTAAGTATGCTAAGGGGTTTTGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAACGAAAGGCAGTTGTAATGGCTAAGTATGCTAAGGGGTTTTGTTT  450

seq1  TGTTTTGTTTTGTTTTTTAAGGAATCTTGATTAACGTGTCTTCTAAAGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTGTTTTGTTTTTTAAGGAATCTTGATTAACGTGTCTTCTAAAGTA  500

seq1  AAAACATGATGGGTTATTGTTATATAATGCTAACCTGTTTAAATATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATGATGGGTTATTGTTATATAATGCTAACCTGTTTAAATATTTAT  550

seq1  TTATTCCTAAAAAATTTATACAATTTTAAAGGTTATTCACATTTTTTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTCCTAAAAAATTTATACAATTTTAAAGGTTATTCACATTTTTTAAA  600

seq1  TTTATTTGATTTTATTTTGTGTGCTGGAGTGTTTTTGCCTACTTCTAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTGATTTTATTTTGTGTGCTGGAGTGTTTTTGCCTACTTCTAAGT  650

seq1  AAACAACTCTCATGCGGTGCCCTCAGAGGCTTGAAGAGGGCATCGGATCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAACTCTCATGCGGTGCCCTCAGAGGCTTGAAGAGGGCATCGGATCT  700

seq1  CCGAGAGCTGGAGTTACAGACAGCTGTGAGTGGCCATATGGGTGCCGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGAGCTGGAGTTACAGACAGCTGTGAGTGGCCATATGGGTGCCGGGA  750

seq1  ACCAAACTCTGGTCCTCTGTAAAAGCAATAAATGCATTGACCCATTTCTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACTCTGGTCCTCTGTAAAAGCAATAAATGCATTGACCCATTTCTC  800

seq1  CAACCCCTAGAACTTTAATTTTTAAATTAACTTTTTACTTTTTGCTTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCTAGAACTTTAATTTTTAAATTAACTTTTTACTTTTTGCTTTGT  850

seq1  TAGGAATTAAATCTAAGGCTTTGCACATCCTAGACAGATTATTATCACTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATTAAATCTAAGGCTTTGCACATCCTAGACAGATTATTATCACTA  900

seq1  AACTACATCTCCAGCTCCTAATTTAACTTTTTTTTATTTAAAAATAAAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTACATCTCCAGCTCCTAATTTAACTTTTTTTTATTTAAAAATAAAAT  950

seq1  ATTGGTGGGCTGGAGAGATGGCTCAGCGGTTAAGAGCACAGACTGCTCTT  1000
      ||| ||||||| ||||||||||||||| |||||||||||||||||||| |
seq2  ATT-GTGGGCT-GAGAGATGGCTCAGC-GTTAAGAGCACAGACTGCTC-T  996

seq1  CCGGAGGTCCTGAGTTCAAGTCCCAGCAACCACATGGTAGCTCATGGCCA  1050
      ||||| ||||||||||| ||| ||||| ||||||| ||||| ||| ||||
seq2  CCGGA-GTCCTGAGTTC-AGT-CCAGC-ACCACAT-GTAGCCCAT-GCCA  1040

seq1  TCTGTAATGGGATCCTATGCCCTCTTCTGGTGCATCTGAAGACAGTGACA  1100
      ||||||   ||||||||||||||| ||||||||||||  |||| ||||||
seq2  TCTGTA--TGGATCCTATGCCCTC-TCTGGTGCATCTTGAGAC-GTGACA  1086

seq1  G  1101
      |
seq2  G  1087

seq1: chr3_129845563_129845977
seq2: B6Ng01-095I06.g_71_485 (reverse)

seq1  AGCATATACAAACCATCACAGAGGCTCTTATGGCCATTATACCTTTACCT  50
      ||||||||||||||| |||||||||| ||| |||||||||||||||||||
seq2  AGCATATACAAACCAACACAGAGGCTTTTAAGGCCATTATACCTTTACCT  50

seq1  TACAGACATTGCTGAGACCTGTTTTTTTTTTTTTTTTTTTTTTTTTTCCT  100
      ||||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  TACAGACATTGCTGAGACCGGTTTTTTTTTTTTTTTTATTTTTTTTTCCT  100

seq1  CTCCCAAGTTGCCTCCTCACTTTGGTCAAAGCCCAAGTCCTGATGTTAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAGTTGCCTCCTCACTTTGGTCAAAGCCCAAGTCCTGATGTTAGC  150

seq1  ATCATGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT  200

seq1  CTCCTGCTGTCTCTCCACCTCTCTGTCCCTATCTCTAGACTTAGTACTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTGCTGTCTCTCCACCTCTCTGTCCCTATCTCTAGACTTAGTACTTT  250

seq1  TCAAAGTATTTGTTTATTTTTATGTGTATGATTGATTTTCCTGCATGTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGTATTTGTTTATTTTTATGTGTATGATTGATTTTCCTGCATGTAT  300

seq1  GTCTGTGTACCACTTGTGTACCTGGTCCTGTGACAGCCAGAAGAGGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTGTACCACTTGTGTACCTGGTCCTGTGACAGCCAGAAGAGGACAT  350

seq1  CAGCTCCTTTGAAACTGGAGTTACAGATGGTTGTGAGCCACCATGTGGCG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTCCTTTGAAACTGGAGTTACAGATGGTTGTGAGCCACCATGTGGCG  400

seq1  CTGGGAACTGAATTC  415
      |||||||||||||||
seq2  CTGGGAACTGAATTC  415