BAC Information

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BAC

Clone NameB6Ng01-095K18
Chromosome3 (Build37)
Map Location 93,763,551 - 93,764,688
singlet/doubletsinglet
Overlap geneTdpoz5
Upstream gene2310001H18Rik, Lce3f, Crct1, Lce1m, EG229571, Crnn, EG229574, EG668300, LOC668304, Flg, LOC100042701, Hrnr, Rptn, EG383891, Tchh, Tchhl1, S100a11, S100a10, EG433623, Tdpoz2, Tdpoz1, LOC668325, LOC545550, EG436563, Tdpoz4, Tdpoz3, EG668341, LOC668344, EG668346
Downstream geneEG668353, EG668356, LOC668359, LOC100042761, LOC433624, LOC668367, LOC433625, LOC100043188, EG383977, EG245290, EG668385, EG212727, Them4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-095K18.bB6Ng01-095K18.g
ACCDH906546DH906547
length1,1221,205
definitionDH906546|Mus musculus domesticus DNA, BAC clone: B6Ng01-095K18, 5' end.DH906547|Mus musculus domesticus DNA, BAC clone: B6Ng01-095K18, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccctgttcacagactgctgcctgttggtagctggccatgaattca
gggctcacaaggccatcctagcagctcgctctccagttttcagagccatg
tttgaacatgaaatggaggagagactaggaaaccccactgagatccatga
cctggatcccaaagtctttaaggagatgatgggcttcatttacactggga
aggcgccacacctccaaagccactccatggccactgatgtgctgacagct
gctgacaagtatggtctggagggcctgaaggtcctgtgtgaggatgccct
ctgcaggaacctctctgtggagaatgctgcacaaactctcatcctggctg
acctccacaaaagagagcagctgaagactcaggccctgtatttcattgca
cttcatgcttctgtggtctctgagacctcagagtggaagtcaatgatgga
gacccatccccacttggttggctgaagcattccacttcctgggtcctgca
cgcagtgttgagccctcactcaaacacgtaaaatgagtttaggggatgga
cagctatgaccaacatctgtcttccaatagcaataaccagtgttgttacc
actgatttctggttagagtacagtattgctggaacatttatagtgaacct
gggaaaaagcagcatggtggctcagcatgtaaaacagctgttatatgtta
aaatgctgggtgggggatgggcagcactggagtctgggacagtctccttg
acttctactctgttaatgttctagtatgatttttgtctgatatttaggaa
actgggatttaatttagtgctgtccctaaaggacagacaaacctgagttt
cttcagagaaaccttttctgcattggactatgtagagagatgactggggc
ccagagcaaagataatcagcacgaatgttaactcattgggatggaagaca
tgaagactttatttttaagattcagtttgtgggaactcagctgcagagca
gtacagttcactcaaagaactcttgttcagttctcagcatacagagaagt
tttcagccacccctttacttgtgatcagaagaatctgaagcctactttgt
ttcaatgctcaaacagctctgt
gaattctatgcatctcgacctttcgctgatgaaaggcttctccacctgga
tttcctctgcattttcctactttaaggagagggtgggggtaggcttgatt
gcaatgatcctatgcggtggagtgttgcttttgctctggatggtctgtaa
actcaaagcccaaacaaaaagggacaagatggtaatagcccaagcacttg
cagcattagaacatggtacctcccctgatatatggttatctatacttaag
caataagtcgctggccactcagttcttgcactgcaataggctcgtctcat
tgcacaggatagagtgagtgtgcttcagcagcccaatagagttgcatggc
taagcactgcagtagaaaggctctgcggcataatatgagcctgttcgagg
gagacatgtcatcttgtatgaagattgagtgtccaagtgtcctttccaca
ggaaaaacgacatgggagcggaccaagacccctccgcgtgacgagcctgg
gagaaggttttgtgtaatgcccctatttttgcacactggggatttgacct
ctatctccactctcagtactgggtggcctgttgccttttaaataaaagaa
aagggggagatgtgaggagctgcccttgcaatcgccattacaagatggcg
ctgacatccggtgttctaactggtaaacaagtagtctgcgcatttgctgg
ggtatttttccattccttgtgccctgcctgtcccgtggcatcatctgggc
tgatggtgagcaaccagtcagggtgaaacacgtctccaaccgctctttcg
tggcctatttaaggaccgagtttcctgtgttctgggtcctctccccagaa
gctgatcatcttctctcgagatgcattaaagctttgctgcagaggatccg
agtgtgtcctgtgtgtgtgtcctcgccggcgagactctttatcacacagg
acacccctagttgagtttctgtaatgtccctatagtctgctttaaacata
tatgctaaattgacctcatatgaatacctcactttcttatctgattggat
ggaagtttgtctgaatgtatagctgggctgcatctgaagtcttttagagt
tatagccatggtgcctgactcattggacctaaactctccaacctgggagt
gcagtttacccaccattagtagtcatcgttctcagtagagattccgagtg
tcaca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_93763551_93764688
seq2: B6Ng01-095K18.b_46_1167 (reverse)

seq1  ACAGAGCTGTTTGTAGCAATGGAGACCAGATGAGGGCCTCAGATCCTCTG  50
      ||||||||||||| ||| || || ||   | |  ||| |||||| ||   
seq2  ACAGAGCTGTTTG-AGC-ATTGAAAC--AAAGTAGGCTTCAGATTCTTCT  46

seq1  GATCACAAGTTAAGGGGTGGCTGAAAAACTCTCCTGTATGCTGAGAACTG  100
      |||||||||| ||||||||||||||||  ||| |||||||||||||||||
seq2  GATCACAAGTAAAGGGGTGGCTGAAAACTTCT-CTGTATGCTGAGAACTG  95

seq1  AACCAGAGTTCTCTGAGTGAACTGTAACTGCTTCTGCAGCTGAGTTCCCA  150
      ||| |||||||| |||||||||||| ||||| ||||||||||||||||||
seq2  AACAAGAGTTCTTTGAGTGAACTGT-ACTGC-TCTGCAGCTGAGTTCCCA  143

seq1  CAAACTGAATCTTTAAAAAATAAAAGTCTTCATTGTCTTTTCCATCCCAA  200
      |||||||||||||  |||||| |||||||||| ||||  |||||||||||
seq2  CAAACTGAATCTT--AAAAAT-AAAGTCTTCA-TGTC--TTCCATCCCAA  187

seq1  TGAGTTAACATTCGTGCTTGATTTATCCTTTGCTCTGGGCCCCAGTCATC  250
      ||||||||||||||||| ||| |||| |||||||||||||||||||||||
seq2  TGAGTTAACATTCGTGC-TGA-TTAT-CTTTGCTCTGGGCCCCAGTCATC  234

seq1  TCTTCTACATAGTCCAATGCAG-ACAGGTTTCTCTGAAGAAACTCAGGTT  299
      || ||||||||||||||||||| | |||||||||||||||||||||||||
seq2  TC-TCTACATAGTCCAATGCAGAAAAGGTTTCTCTGAAGAAACTCAGGTT  283

seq1  TGTCTGTCC-TTAGGGACAGCACCTAAATTAAATCCCAGTTTCCTAAATA  348
      ||||||||| |||||||||||| |||||||||||||||||||||||||||
seq2  TGTCTGTCCTTTAGGGACAGCA-CTAAATTAAATCCCAGTTTCCTAAATA  332

seq1  TCAGACAAAAATCATACTAGAACATTAACAGAGTAGAAGTCAAGGAGACT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGACAAAAATCATACTAGAACATTAACAGAGTAGAAGTCAAGGAGACT  382

seq1  GTCCCAGACTCCAGTGCTGCCCATCCCCCACCCAGCATTTTAACATATAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCAGACTCCAGTGCTGCCCATCCCCCACCCAGCATTTTAACATATAA  432

seq1  CAGCTGTTTTACATGCTGAGCCACCATGCTGCTTTTTCCCAGGTTCACTA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTTTTACATGCTGAGCCACCATGCTGCTTTTTCCCAGGTTCACTA  482

seq1  TAAATGTTCCAGCAATACTGTACTCTAACCAGAAATCAGTGGTAACAACA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGTTCCAGCAATACTGTACTCTAACCAGAAATCAGTGGTAACAACA  532

seq1  CTGGTTATTGCTATTGGAAGACAGATGTTGGTCATAGCTGTCCATCCCCT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTATTGCTATTGGAAGACAGATGTTGGTCATAGCTGTCCATCCCCT  582

seq1  AAACTCATTTTACGTGTTTGAGTGAGGGCTCAACACTGCGTGCAGGACCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTCATTTTACGTGTTTGAGTGAGGGCTCAACACTGCGTGCAGGACCC  632

seq1  AGGAAGTGGAATGCTTCAGCCAACCAAGTGGGGATGGGTCTCCATCATTG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGTGGAATGCTTCAGCCAACCAAGTGGGGATGGGTCTCCATCATTG  682

seq1  ACTTCCACTCTGAGGTCTCAGAGACCACAGAAGCATGAAGTGCAATGAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCACTCTGAGGTCTCAGAGACCACAGAAGCATGAAGTGCAATGAAA  732

seq1  TACAGGGCCTGAGTCTTCAGCTGCTCTCTTTTGTGGAGGTCAGCCAGGAT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGGGCCTGAGTCTTCAGCTGCTCTCTTTTGTGGAGGTCAGCCAGGAT  782

seq1  GAGAGTTTGTGCAGCATTCTCCACAGAGAGGTTCCTGCAGAGGGCATCCT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTTTGTGCAGCATTCTCCACAGAGAGGTTCCTGCAGAGGGCATCCT  832

seq1  CACACAGGACCTTCAGGCCCTCCAGACCATACTTGTCAGCAGCTGTCAGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACAGGACCTTCAGGCCCTCCAGACCATACTTGTCAGCAGCTGTCAGC  882

seq1  ACATCAGTGGCCATGGAGTGGCTTTGGAGGTGTGGCGCCTTCCCAGTGTA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCAGTGGCCATGGAGTGGCTTTGGAGGTGTGGCGCCTTCCCAGTGTA  932

seq1  AATGAAGCCCATCATCTCCTTAAAGACTTTGGGATCCAGGTCATGGATCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGCCCATCATCTCCTTAAAGACTTTGGGATCCAGGTCATGGATCT  982

seq1  CAGTGGGGTTTCCTAGTCTCTCCTCCATTTCATGTTCAAACATGGCTCTG  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGGGTTTCCTAGTCTCTCCTCCATTTCATGTTCAAACATGGCTCTG  1032

seq1  AAAACTGGAGAGCGAGCTGCTAGGATGGCCTTGTGAGCCCTGAATTCATG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACTGGAGAGCGAGCTGCTAGGATGGCCTTGTGAGCCCTGAATTCATG  1082

seq1  GCCAGCTACCAACAGGCAGCAGTCTGTGAACAGGGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCTACCAACAGGCAGCAGTCTGTGAACAGGGAATTC  1122