BAC Information

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BAC

Clone NameB6Ng01-096B07
Chromosome3 (Build37)
Map Location 88,362,134 - 88,461,754
singlet/doubletdoublet
Overlap geneUbqln4, LOC545536, Ssr2, Arhgef2, Rxfp4
Upstream geneEG546801, Arhgef11, EG625281, 3110045G13Rik, Ntrk1, Insrr, Sh2d2a, Prcc, Hdgf, Mrpl24, BC023814, Isg20l2, Crabp2, LOC100042242, Nes, Bcan, Hapln2, Gpatc4, Apoa1bp, Ttc24, Iqgap3, Mef2d, AI849053, LOC100042271, LOC100042277, Rhbg, 1700021C14Rik, Cct3, 0610031J06Rik, Tmem79, Smg5, Paqr6, Bglap-rs1, Bglap2, LOC627995, Bglap1, Pmf1, Slc25a44, LOC667989, Sema4a, LOC546802, Lmna, 2700083E18Rik, Rab25, Mapbpip
Downstream gene2810403A07Rik, Rit1, Syt11, 5830417I10Rik, Msto1, Dap3, Ash1l, Rusc1, Fdps, LOC628070, Pklr, Hcn3, Clk2, Scamp3, 1110013L07Rik, Gba, Mtx1, Thbs3, Muc1, Trim46, Krtcap2, Dpm3, Rag1ap1, Efna1, Efna3, Efna4, Adam15, Dcst1, Dcst2, Zbtb7b, Lenep, Flad1, Cks1b, Shc1, Pygo2, Pbxip1, Pmvk, Kcnn3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096B07.bB6Ng01-096B07.g
ACCDH906840DH906841
length1,0991,031
definitionDH906840|Mus musculus domesticus DNA, BAC clone: B6Ng01-096B07, 5' end.DH906841|Mus musculus domesticus DNA, BAC clone: B6Ng01-096B07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(88,460,651 - 88,461,754)(88,362,134 - 88,363,163)
sequence
gaattccaggatattcagggctacacagagaaaccctttttcaaagaagc
aaacaaacaaaaaatcagtcaggcagtggtagcacacacctttaattcca
gctcttgggaggcagaggcaggcagatctctataaatttgaggccagcct
ggtctagaccaggttccaggacagtcaagactatacagagaaaccctgtc
tcaataaacaaacaaacaagcaaaaccaaaaccaaccaaccaaaaacaaa
aaagaaagatgaataaaaaatttgtgtagatatgtgtatatatcacatgt
gtgttggtgcctgtagaggccagaagacagtgttgtaactcccccacagc
tggagttacaggtagctgtgagccctctttctgtgggtgttagggactga
acttgggttctatggaagatgcagcaatcactcttaaatgttaaaccatc
tctccagccccgccctcttcatttttctaatcaagagaaaataaatccaa
tacatcaaaattgtttaagtgtttttgaatatatgatgtgtgtgtttgtg
tgcacttatgcatttgtgcagagttcaatggagaatgttgggtgatagtc
ttcactagccaccttaagatggtcttcttgttcacccataggtgacccat
gagtttcccaggtccaactatgtagtggtttaaataagtatttgcccgta
ggctcagatatttaaacactgggagttcagttagtgaccctaactgtgct
gtttggggaggttggaaacctttgacaggtggagccttgttagaagaatg
tctccaggtgacaggcgtagagtgtttctggtctttgcctcactcctgct
ctcttagtgccaagctcttgttactgtgcctgctgccctgcctccattct
ccccaccatggtggactctagccttcaggaaccataagccgaaagaaact
tccttaattaagtgccttggccatggcattttctcagagcaacagaaagt
gtagtgagaatttgggtttcttaaaaaccacatgacgcgggcatgggtgg
cgcaggcctttatccagcactccggggaggctgaagcaagtggatttct
gaattccagtgtctctatgtagctctggccgtcctggaactctctttata
gatgaggctgaccttaactcgtagagatctacctctacctcctgagtgat
gggactaaaggtatttgccagaaggcaagctaggtggtcttgtcatcggg
gttatggagacctgagtctgacagcaggtccttagagcgagccatcagct
ctaaagcagacagccctcagcctcagtgttctgacagctcggcttggctg
aagacccagaaggagggagtagaggatgtccaggctgaaccctttctcta
cccagtttgatttaccaggactaacagtgtggtttgctgagactggccta
gaaacctgtttgtatggttttctcccaggtattagggggcaaccggtcca
tgatcctctctgattccattttcatacttacagaaggtagatgggaatat
ttacctggggtggttattgtgagaagggtatgactttaattctaggtcac
ttagctgctctcagtgtcaagctttaggggtgtcataaacctagtaaact
gttcttttttggggggtggggcggttcaagacagggtttctctgtgtagc
cctggctgtcctggaactcactttgtagaccaggctggcctcgaactcag
aaatccgcctgcctctgcctcccgagtgctgggattaaagttgtgcgcca
ccacgcccggcttttgtaaactgttctttattcctcttcctagggacttc
tctcttccatcctaatctgttctaagacaccttactagactgatatacct
agcctttcaggactctgatcaagaggtcatttcctatccaataatttatc
atctagtgagtatttattgagtctcactatggaagaggtacagttccagg
tgcttgggggcgttgtaccctgtgcctcttcacacccccatcttcctatg
ctctctgacacctctgagtgtctctgagcttgtaaaatggaaattgtttt
ttttttaaaaattattttattttatgtatat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_88460651_88461754
seq2: B6Ng01-096B07.b_47_1145 (reverse)

seq1  AGAAATCCGCCTGCCTCTGCCTCCC--GAGTGCTGGGATTAAAGGCATGC  48
      |||||||| | ||| || |||||||  |||||||||   ||||||| |||
seq2  AGAAATCCACTTGCTTCAGCCTCCCCGGAGTGCTGG--ATAAAGGCCTGC  48

seq1  GCCA-CCATGCCCGGCCGTCATGTGGTTTTTAAAGAAACCAAAATTCTCA  97
      |||| |||||||||  ||||||||||||||| |||||||| |||||||||
seq2  GCCACCCATGCCCG--CGTCATGTGGTTTTT-AAGAAACCCAAATTCTCA  95

seq1  CTACACTTTTCTGTTGCTCTGAGAAAATGCCATGGCCAAGGCAACTTAAT  147
      |||||| ||||||||||||||||||||||||||||||||||| |||||||
seq2  CTACAC-TTTCTGTTGCTCTGAGAAAATGCCATGGCCAAGGC-ACTTAAT  143

seq1  TAAGGAAGTTTCTTTCGGCTTATGGTTCCTGAAGGCTAGAGTCCACCATG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGTTTCTTTCGGCTTATGGTTCCTGAAGGCTAGAGTCCACCATG  193

seq1  GTGGGGAAGAATGGAGGCAGGGCAGCAGGCACAGTAACAAGAGCTTGGCA  247
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGG-AGAATGGAGGCAGGGCAGCAGGCACAGTAACAAGAGCTTGGCA  242

seq1  CTAAGAGAGCAGGAAGTGAGGC-AAGACCAGAAACACTCTACGCCTGTCA  296
      ||||||||||||| |||||||| |||||||||||||||||||||||||||
seq2  CTAAGAGAGCAGG-AGTGAGGCAAAGACCAGAAACACTCTACGCCTGTCA  291

seq1  CCTGGAGACATTCTTCTAACAAGGCTCCACCTGTCAAAGGTTTCCAACCT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGACATTCTTCTAACAAGGCTCCACCTGTCAAAGGTTTCCAACCT  341

seq1  CCCCAAACAGCACAGTTAGGGTCACTAACTGAACTCCCAGTGTTTAAATA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAACAGCACAGTTAGGGTCACTAACTGAACTCCCAGTGTTTAAATA  391

seq1  TCTGAGCCTACGGGCAAATACTTATTTAAACCACTACATAGTTGGACCTG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGCCTACGGGCAAATACTTATTTAAACCACTACATAGTTGGACCTG  441

seq1  GGAAACTCATGGGTCACCTATGGGTGAACAAGAAGACCATCTTAAGGTGG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAACTCATGGGTCACCTATGGGTGAACAAGAAGACCATCTTAAGGTGG  491

seq1  CTAGTGAAGACTATCACCCAACATTCTCCATTGAACTCTGCACAAATGCA  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTGAAGACTATCACCCAACATTCTCCATTGAACTCTGCACAAATGCA  541

seq1  TAAGTGCACACAAACACACACATCATATATTCAAAAACACTTAAACAATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTGCACACAAACACACACATCATATATTCAAAAACACTTAAACAATT  591

seq1  TTGATGTATTGGATTTATTTTCTCTTGATTAGAAAAATGAAGAGGGCGGG  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATGTATTGGATTTATTTTCTCTTGATTAGAAAAATGAAGAGGGCGGG  641

seq1  GCTGGAGAGATGGTTTAACATTTAAGAGTGATTGCTGCATCTTCCATAGA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGAGAGATGGTTTAACATTTAAGAGTGATTGCTGCATCTTCCATAGA  691

seq1  ACCCAAGTTCAGTCCCTAACACCCACAGAAAGAGGGCTCACAGCTACCTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAGTTCAGTCCCTAACACCCACAGAAAGAGGGCTCACAGCTACCTG  741

seq1  TAACTCCAGCTGTGGGGGAGTTACAACACTGTCTTCTGGCCTCTACAGGC  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTCCAGCTGTGGGGGAGTTACAACACTGTCTTCTGGCCTCTACAGGC  791

seq1  ACCAACACACATGTGATATATACACATATCTACACAAATTTTTTATTCAT  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACACACATGTGATATATACACATATCTACACAAATTTTTTATTCAT  841

seq1  CTTTCTTTTTTGTTTTTGGTTGGTTGGTTTTGGTTTTGCTTGTTTGTTTG  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTTTTTTGTTTTTGGTTGGTTGGTTTTGGTTTTGCTTGTTTGTTTG  891

seq1  TTTATTGAGACAGGGTTTCTCTGTATAGTCTTGACTGTCCTGGAACCTGG  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGAGACAGGGTTTCTCTGTATAGTCTTGACTGTCCTGGAACCTGG  941

seq1  TCTAGACCAGGCTGGCCTCAAATTTATAGAGATCTGCCTGCCTCTGCCTC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGACCAGGCTGGCCTCAAATTTATAGAGATCTGCCTGCCTCTGCCTC  991

seq1  CCAAGAGCTGGAATTAAAGGTGTGTGCTACCACTGCCTGACTGATTTTTT  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGCTGGAATTAAAGGTGTGTGCTACCACTGCCTGACTGATTTTTT  1041

seq1  GTTTGTTTGCTTCTTTGAAAAAGGGTTTCTCTGTGTAGCCCTGAATATCC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTTGCTTCTTTGAAAAAGGGTTTCTCTGTGTAGCCCTGAATATCC  1091

seq1  TGGAATTC  1104
      ||||||||
seq2  TGGAATTC  1099

seq1: chr3_88362134_88363163
seq2: B6Ng01-096B07.g_69_1099

seq1  GAATTCCAGTGTCTCTATGTAGCTCTGGCCGTCCTGGAACTCTCTTTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGTGTCTCTATGTAGCTCTGGCCGTCCTGGAACTCTCTTTATA  50

seq1  GATGAGGCTGACCTTAACTCGTAGAGATCTACCTCTACCTCCTGAGTGAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAGGCTGACCTTAACTCGTAGAGATCTACCTCTACCTCCTGAGTGAT  100

seq1  GGGACTAAAGGTATTTGCCAGAAGGCAAGCTAGGTGGTCTTGTCATCGGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTAAAGGTATTTGCCAGAAGGCAAGCTAGGTGGTCTTGTCATCGGG  150

seq1  GTTATGGAGACCTGAGTCTGACAGCAGGTCCTTAGAGCGAGCCATCAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATGGAGACCTGAGTCTGACAGCAGGTCCTTAGAGCGAGCCATCAGCT  200

seq1  CTAAAGCAGACAGCCCTCAGCCTCAGTGTTCTGACAGCTCGGCTTGGCTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAGCAGACAGCCCTCAGCCTCAGTGTTCTGACAGCTCGGCTTGGCTG  250

seq1  AAGACCCAGAAGGAGGGAGTAGAGGATGTCCAGGCTGAACCCTTTCTCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACCCAGAAGGAGGGAGTAGAGGATGTCCAGGCTGAACCCTTTCTCTA  300

seq1  CCCAGTTTGATTTACCAGGACTAACAGTGTGGTTTGCTGAGACTGGCCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGTTTGATTTACCAGGACTAACAGTGTGGTTTGCTGAGACTGGCCTA  350

seq1  GAAACCTGTTTGTATGGTTTTCTCCCAGGTATTAGGGGGCAACCGGTCCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCTGTTTGTATGGTTTTCTCCCAGGTATTAGGGGGCAACCGGTCCA  400

seq1  TGATCCTCTCTGATTCCATTTTCATACTTACAGAAGGTAGATGGGAATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCCTCTCTGATTCCATTTTCATACTTACAGAAGGTAGATGGGAATAT  450

seq1  TTACCTGGGGTGGTTATTGTGAGAAGGGTATGACTTTAATTCTAGGTCAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGGGGTGGTTATTGTGAGAAGGGTATGACTTTAATTCTAGGTCAC  500

seq1  TTAGCTGCTCTCAGTGTCAAGCTTTAGGGGTGTCATAAACCTAGTAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGCTCTCAGTGTCAAGCTTTAGGGGTGTCATAAACCTAGTAAACT  550

seq1  GTTCTTTTTTGGGGGGTGGGGCGGTTCAAGACAGGGTTTCTCTGTGTAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTTTTTTGGGGGGTGGGGCGGTTCAAGACAGGGTTTCTCTGTGTAGC  600

seq1  CCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCAG  650

seq1  AAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGTTGTGCGCCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCGCCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGTTGTGCGCCA  700

seq1  CCACGCCCGGCTTTTGTAAACTGTTCTTTATTCCTCTTCCTA-GGACTTC  749
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  CCACGCCCGGCTTTTGTAAACTGTTCTTTATTCCTCTTCCTAGGGACTTC  750

seq1  TCTCTTCCATCCTAATCTGTTCTAAGACACCTTACTAGACTGATATACCT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTTCCATCCTAATCTGTTCTAAGACACCTTACTAGACTGATATACCT  800

seq1  AGCCTTTCAGGACTCTGATCAAGAGGTCATTTCCTATCCAATAATTTATC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTTTCAGGACTCTGATCAAGAGGTCATTTCCTATCCAATAATTTATC  850

seq1  ATCTAGTGAGTATTTATTGAGTCTCACTATGGAAGAGGTACAGTTCCAGG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGTGAGTATTTATTGAGTCTCACTATGGAAGAGGTACAGTTCCAGG  900

seq1  TGCTTGGGGGCGTTGTACCCTGTGCCTCTTCACACCCCCATCTTCCTATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTGGGGGCGTTGTACCCTGTGCCTCTTCACACCCCCATCTTCCTATG  950

seq1  CTCTCTGACACCTCTGAGGTCCTCTGAGCCTGAGAAATGGAAATTGTTTT  999
      ||||||||||||||||||   |||||||| ||  ||||||||||||||||
seq2  CTCTCTGACACCTCTGAGTGTCTCTGAGCTTGTAAAATGGAAATTGTTTT  1000

seq1  TTTTTTAAAGAATTA-TTTATTTTATGTATAT  1030
      ||||||||| ||||| ||||||||||||||||
seq2  TTTTTTAAA-AATTATTTTATTTTATGTATAT  1031