BAC Information

Click to search

BAC

Clone NameB6Ng01-096H16
Chromosome3 (Build37)
Map Location 156,871,984 - 156,873,135
singlet/doubletsinglet
Overlap geneNegr1
Upstream geneLOC100040901, 4930570G19Rik, LOC100041152, LOC668853
Downstream geneLOC546818, Zranb2, Ptger3, LOC433686, LOC624684, Cth, Ankrd13c, Sfrs11, Lrrc40, Lrrc7
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096H16.bB6Ng01-096H16.g
ACCDH907117DH907118
length1,1501,174
definitionDH907117|Mus musculus domesticus DNA, BAC clone: B6Ng01-096H16, 5' end.DH907118|Mus musculus domesticus DNA, BAC clone: B6Ng01-096H16, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaggtacaccaggacacattcatcttccatgcttgtggagaggt
gcttgcactgtaagagaaagagaacacactgccccatgctcctcagagcc
tcctgaacctttagccactattctccaaagaatcaagtggttccaaggaa
aaagtgagttcactggccctcctgtttacctggaggacttggctttagct
ggctgcttgtagttagggtaacgttgaggcgaggtagtctgcatttgtgc
cttttcactctccatttctattggcctggaaacagggagatggtgtttcg
tctgcctgagcctcactattacaactcttcaaaagaaatgctggaaccag
agaaacctccggaatacctttggcttgtaatggacattacttacaagacg
gggcctggcacctcactgctcactcagcatatcacctcctgcctctcagc
accccattccctccaagctctgaccagtacagaatactgaagcccaatat
ttcagtaggctagaaaaacaccaagtcaggatgagcctgctttctgctgt
ctctctgcatggacaagcatattgtccgaggacaaacaacataatttagg
aggtcagtttgggaaagtttccctggtctctgggggtggcttggagccat
tccccacagttcttactgaccacagtcatgttgctcttttgctgttttta
cttggtgcctttttctccttatggaggatcagagaaagtgtcttaggcac
tgacatctttaccacagtgctgggatgatgggatgctatcctcaaatgtg
gggttaaagaagagcagagttctaaagtctctgtggtcatgcagccccca
ccttaatcaccctatggctttgtctagggactcggttgtttttccttaac
taagccaagggacagcttgtccttggcaggcctggcttcctgcatgctgt
tgtcatggccccattgcttcaaaagagcccaggaggctttgagtgacaca
aacctgccagcctgccctgttccaatggttcctcctggaatctgcccttt
ccctcttggctcacagaccctgtccatgatggagcatctcctcttctgac
ctatttactctttgcatccagtccctcatacagagactctccagtgtcca

gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaagaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcgggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctgagtgaggtaacacattcacaaagaaactcacacaata
tgtattcactgataagtggatattagccccaaacctaggataaccaagat
ataagatataatttgctaaacacatgaaactcaagaagaatgaagactga
agtgtggacactatgcccctccttagatttgggaacaaaacacccatgga
aggagttacagagacaaagtttggagctgagataaaaggatggaccatgt
agagactgccatatccagggatccaccccataatcagcatccaaacgctg
acaccatttgcatacactagcaagattttattgaaaggacccagattgta
gctgtctcttgtgagactatgccggggcctagcaaacacagaagtgggat
gttcacagtcagcttatgggatggatcatagggctccccatggaggagct
agagaagtagccaaggagctaaagggatctgcaaccttataggtggaaca
acattatgaactaaccagtaccccgagcttctgactctagctgcattaat
atcaaaagatggcctagtcggcgtccctgcaagagaggctcatttgaact
tgcaaacttttatttgccagtacaggtaactcaggtcaaaaaggcgtgac
tgggtggcagggatgatggcggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_156871984_156873135
seq2: B6Ng01-096H16.b_44_1193 (reverse)

seq1  TGGACACTG--GAGTCTCTGATTGA-GGACTGGATGCAAAGAGT-AATAG  46
      |||||||||  |||||||||  ||| |||||||||||||||||| |||||
seq2  TGGACACTGGAGAGTCTCTGTATGAGGGACTGGATGCAAAGAGTAAATAG  50

seq1  ATTCAGAGAAGGAGAATTTGGCTCCATCATGGACAGGGTCTGTGAGCCAA  96
        |||||  ||||||     ||||||||||||||||||||||||||||||
seq2  -GTCAGAAGAGGAGA----TGCTCCATCATGGACAGGGTCTGTGAGCCAA  95

seq1  GAGGGGAAGGGCAGATTCCAGGAGGAACCATGGGAACAGGGCAGGCTGGC  146
      ||||| ||||||||||||||||||||||||| ||||||||||||||||||
seq2  GAGGGAAAGGGCAGATTCCAGGAGGAACCATTGGAACAGGGCAGGCTGGC  145

seq1  AGGTTTGTGTCACTCCAAGCCTCCTGGGGCTCTTTTTGAAGCAATGGGGC  196
      ||||||||||||||| ||||||||| |||||| |||||||||||||||||
seq2  AGGTTTGTGTCACTCAAAGCCTCCT-GGGCTC-TTTTGAAGCAATGGGGC  193

seq1  CATGAC-ACAGCATGCAGGAAGCCAGGCCTGCCAAGGAC-AGCTGTTCCC  244
      |||||| |||||||||||||||||||||||||||||||| ||||| ||||
seq2  CATGACAACAGCATGCAGGAAGCCAGGCCTGCCAAGGACAAGCTG-TCCC  242

seq1  TTGGCTTAGTTAAGGAAAAACAACCGAGTCCCTAGACAAAGCCATAGGGT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTAGTTAAGGAAAAACAACCGAGTCCCTAGACAAAGCCATAGGGT  292

seq1  GATTAAGGTGGGGGCTGCATGACCACAGAGACTTTAGAACTCTGCTCTTC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAGGTGGGGGCTGCATGACCACAGAGACTTTAGAACTCTGCTCTTC  342

seq1  TTTAACCCCACATTTGAGGATAGCATCCCATCATCCCAGCACTGTGGTAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAACCCCACATTTGAGGATAGCATCCCATCATCCCAGCACTGTGGTAA  392

seq1  AGATGTCAGTGCCTAAGACACTTTCTCTGATCCTCCATAAGGAGAAAAAG  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGTCAGTGCCTAAGACACTTTCTCTGATCCTCCATAAGGAGAAAAAG  442

seq1  GCACCAAGTAAAAACAGCAAAAGAGCAACATGACTGTGGTCAGTAAGAAC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAAGTAAAAACAGCAAAAGAGCAACATGACTGTGGTCAGTAAGAAC  492

seq1  TGTGGGGAATGGCTCCAAGCCACCCCCAGAGACCAGGGAAACTTTCCCAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGAATGGCTCCAAGCCACCCCCAGAGACCAGGGAAACTTTCCCAA  542

seq1  ACTGACCTCCTAAATTATGTTGTTTGTCCTCGGACAATATGCTTGTCCAT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACCTCCTAAATTATGTTGTTTGTCCTCGGACAATATGCTTGTCCAT  592

seq1  GCAGAGAGACAGCAGAAAGCAGGCTCATCCTGACTTGGTGTTTTTCTAGC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGAGACAGCAGAAAGCAGGCTCATCCTGACTTGGTGTTTTTCTAGC  642

seq1  CTACTGAAATATTGGGCTTCAGTATTCTGTACTGGTCAGAGCTTGGAGGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGAAATATTGGGCTTCAGTATTCTGTACTGGTCAGAGCTTGGAGGG  692

seq1  AATGGGGTGCTGAGAGGCAGGAGGTGATATGCTGAGTGAGCAGTGAGGTG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGGTGCTGAGAGGCAGGAGGTGATATGCTGAGTGAGCAGTGAGGTG  742

seq1  CCAGGCCCCGTCTTGTAAGTAATGTCCATTACAAGCCAAAGGTATTCCGG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGCCCCGTCTTGTAAGTAATGTCCATTACAAGCCAAAGGTATTCCGG  792

seq1  AGGTTTCTCTGGTTCCAGCATTTCTTTTGAAGAGTTGTAATAGTGAGGCT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTCTCTGGTTCCAGCATTTCTTTTGAAGAGTTGTAATAGTGAGGCT  842

seq1  CAGGCAGACGAAACACCATCTCCCTGTTTCCAGGCCAATAGAAATGGAGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGACGAAACACCATCTCCCTGTTTCCAGGCCAATAGAAATGGAGA  892

seq1  GTGAAAAGGCACAAATGCAGACTACCTCGCCTCAACGTTACCCTAACTAC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAAAAGGCACAAATGCAGACTACCTCGCCTCAACGTTACCCTAACTAC  942

seq1  AAGCAGCCAGCTAAAGCCAAGTCCTCCAGGTAAACAGGAGGGCCAGTGAA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCCAGCTAAAGCCAAGTCCTCCAGGTAAACAGGAGGGCCAGTGAA  992

seq1  CTCACTTTTTCCTTGGAACCACTTGATTCTTTGGAGAATAGTGGCTAAAG  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTTTTTCCTTGGAACCACTTGATTCTTTGGAGAATAGTGGCTAAAG  1042

seq1  GTTCAGGAGGCTCTGAGGAGCATGGGGCAGTGTGTTCTCTTTCTCTTACA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGAGGCTCTGAGGAGCATGGGGCAGTGTGTTCTCTTTCTCTTACA  1092

seq1  GTGCAAGCACCTCTCCACAAGCATGGAAGATGAATGTGTCCTGGTGTACC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGCACCTCTCCACAAGCATGGAAGATGAATGTGTCCTGGTGTACC  1142

seq1  TGGAATTC  1152
      ||||||||
seq2  TGGAATTC  1150