BAC Information

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BAC

Clone NameB6Ng01-096I04
Chromosome3 (Build37)
Map Location 35,347,230 - 35,471,341
singlet/doubletdoublet
Overlap geneLOC665655, Ube2l3-ps1
Upstream geneEG665636, EG622074, Sox2, LOC100041108
Downstream geneLOC625963, Atp11b, LOC665667, Dcun1d1, Mccc1, BC050811, Acad9, D3Ertd254e, Gpr103, Anxa5, 1810062G17Rik, LOC665709, Exosc9, Ccna2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096I04.bB6Ng01-096I04.g
ACCDH907141DH907142
length1,1261,139
definitionDH907141|Mus musculus domesticus DNA, BAC clone: B6Ng01-096I04, 5' end.DH907142|Mus musculus domesticus DNA, BAC clone: B6Ng01-096I04, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(35,347,230 - 35,348,362)(35,470,184 - 35,471,341)
sequence
gaattctatcacacaatcaagggaaaattaccacctgtacatctcaaatt
attcaaaaaaatgcaaactgaagaagcatttcttaattctttttatgaga
acacaaggttcttgatgcctacgtcacataaagaccccacccctaaaatt
ttagaccaattaattgggtcaaggaaacagaggaatcgataatgtttcag
tggatctatctgcaataacaaatgtataccccttcctaattaatttcttc
tggagaagtaaaagcaggtcaggttaatttaatgtgtcagcttccttctg
gaactaaagcaggggttagagtgggcgtgagtatgagtctactgctagag
ataatcctatgacataagcaacacttgaaacaatatttaagtgtttatga
attaagcatagtagataaatcaaaatagttccacatgttaagctgaagaa
aaaagagtattaatagattgatcaggaccaggaaaccctcttatctcatt
acatgagccattaacaaaataaatatctgcctgtggaatgggagaagatt
ggacaatttttaaatcacaaattcagttcctatgagaaaattatatagct
tactacctgtataataatttctttttttgcagtactctgcaaatgaaaat
tgaaaatccatagagttctgtaatactcttgaaaagtgattattagttaa
gggtaataaaataaattaagggtcaaatccatgtaattgttgatacttgg
tcctctcctgatttactaattgaacgtgaagagtaaggtagcagttagta
ctctatttccttatagtataaatagatacatttcaaaggtttatcctcta
ttgctataatgcctgtaggagaaaatttagtagagaaaatcaataagtta
aaggcaatgaaggatacagacgatatacataaatccctcttttaatttgg
attcaaatagctgtatttcttttctgctggtcaagataatatgtgaagcc
caatgctgtctttttattctagagtttaagaagattgcttagtgcatata
aacatttgattttgtgaaactgcacacaaaaataccaacaggcatcatga
gtcggggctggggcggggaagggggg
gaattctttcgaggaagccaggtgtgctggcgcacgcctttaatcccagc
actcgggaggcagaggcaggcggatttctgagtttgaggccagcctggtc
tacagagtgagttccaggacagccagggctatacagagaaaccctgtctc
gaaaaaccaaaaaaaaaaaaatgtttcgggggacatgggatggaaaggca
gctcactgtgacaagttctaagttgtcatgtgaggaaactgtctgtccct
tatctcttcagacaacttcatctttactttgttacaattctgtttgggtc
caggaattaccacacaaaccacatgaacaccaatctcagtcagacaggga
tagtttatcaagcatattccccagcactggtcttccagggctctggtcca
catttaggaactgaaccatgcccccacgcccagttaagatcctacagggt
ttttaagccccccagtccacaaacatctgtgccaagttattccaccaatc
aggatttagggatgggtgatttccttagaaacatatctttgttttacact
tatcctgctcccattggttggggtattcatctgtggcagggacttgcctt
gtctaattaatatccatgttgtaacttgcctaccaggatgggacttgtct
aaaattcatgtcttaacttgccaacccggatgtcagttgcccatgtacac
atctctttctgccaagttaggatgccagttctcagggaggcctcgggaac
ttaaactttactcaaacccctactcaaaatggaagtcttattccaaatag
cttcttatgttgggttccattccagaggcagttagtttataaaggcaaat
accataaaagcttatacacaggtacaggaagtgctgctggtggctggttc
agtccaagcttattgtgggtaactatataaagcaattctactgacttcca
tcgtgattggtttccaagggcacagaacgtaacagagtatgtaatcatct
tgcattagaaagtttcctagtaacagcaggaaaatatgaaaatttctatt
attggcgagctagcaggttatactagccttcacattcatctagaactaat
atttacccagtctaacacttcgactgaggagagaaagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_35347230_35348362
seq2: B6Ng01-096I04.b_46_1171

seq1  GAATTCTATCACACAATCAAGGGAAAATTACCACCTGTACATCTCAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATCACACAATCAAGGGAAAATTACCACCTGTACATCTCAAATT  50

seq1  ATTCAAAAAAATGCAAACTGAAGAAGCATTTCTTAATTCTTTTTATGAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAAAAAAATGCAAACTGAAGAAGCATTTCTTAATTCTTTTTATGAGA  100

seq1  ACACAAGGTTCTTGATGCCTACGTCACATAAAGACCCCACCCCTAAAATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACAAGGTTCTTGATGCCTACGTCACATAAAGACCCCACCCCTAAAATT  150

seq1  TTAGACCAATTAATTGGGTCAAGGAAACAGAGGAATCGATAATGTTTCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGACCAATTAATTGGGTCAAGGAAACAGAGGAATCGATAATGTTTCAG  200

seq1  TGGATCTATCTGCAATAACAAATGTATACCCCTTCCTAATTAATTTCTTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTATCTGCAATAACAAATGTATACCCCTTCCTAATTAATTTCTTC  250

seq1  TGGAGAAGTAAAAGCAGGTCAGGTTAATTTAATGTGTCAGCTTCCTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGAAGTAAAAGCAGGTCAGGTTAATTTAATGTGTCAGCTTCCTTCTG  300

seq1  GAACTAAAGCAGGGGTTAGAGTGGGCGTGAGTATGAGTCTACTGCTAGAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTAAAGCAGGGGTTAGAGTGGGCGTGAGTATGAGTCTACTGCTAGAG  350

seq1  ATAATCCTATGACATAAGCAACACTTGAAACAATATTTAAGTGTTTATGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCCTATGACATAAGCAACACTTGAAACAATATTTAAGTGTTTATGA  400

seq1  ATTAAGCATAGTAGATAAATCAAAATAGTTCCACATGTTAAGCTGAAGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCATAGTAGATAAATCAAAATAGTTCCACATGTTAAGCTGAAGAA  450

seq1  AAAAGAGTATTAATAGATTGATCAGGACCAGGAAACCCTCTTATCTCATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGTATTAATAGATTGATCAGGACCAGGAAACCCTCTTATCTCATT  500

seq1  ACATGAGCCATTAACAAAATAAATATCTGCCTGTGGAATGGGAGAAGATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGAGCCATTAACAAAATAAATATCTGCCTGTGGAATGGGAGAAGATT  550

seq1  GGACAATTTTTAAATCACAAATTCAGTTCCTATGAGAAAATTATATAGCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACAATTTTTAAATCACAAATTCAGTTCCTATGAGAAAATTATATAGCT  600

seq1  TACTACCTGTATAATAATTTCTTTTTTTGCAGTACTCTGCAAATGAAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTACCTGTATAATAATTTCTTTTTTTGCAGTACTCTGCAAATGAAAAT  650

seq1  TGAAAATCCATAGAGTTCTGTAATACTCTTGAAAAGTGATTATTAGTTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAATCCATAGAGTTCTGTAATACTCTTGAAAAGTGATTATTAGTTAA  700

seq1  GGGTAATAAAATAAATTAAGGGTCAAATCCATGTAATTGTTGATACTTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAATAAAATAAATTAAGGGTCAAATCCATGTAATTGTTGATACTTGG  750

seq1  TCCTCTCCTGATTTACTAATTGAACGTGAAGAGTAAGGTAGCAGTTAGTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTCCTGATTTACTAATTGAACGTGAAGAGTAAGGTAGCAGTTAGTA  800

seq1  CTCTATTTCCTTATAGTATAAATAGATACATTTCAAAGGTTTATCCTCTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATTTCCTTATAGTATAAATAGATACATTTCAAAGGTTTATCCTCTA  850

seq1  TTGCTATAATGCCTGTAGGAGAAAATTTAGTAGAGAAAAATCAATAAGTT  900
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  TTGCTATAATGCCTGTAGGAGAAAATTTAGTAGAG-AAAATCAATAAGTT  899

seq1  AAAGGCAATGAAGGATACAGACGATATACATAAATCCCTCTTTTAATTTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAATGAAGGATACAGACGATATACATAAATCCCTCTTTTAATTTG  949

seq1  GATTCAAATAGCTGTATTTCTTTTCTTGCTGGTCAAGATAATATGTGAAG  1000
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  GATTCAAATAGCTGTATTTCTTTTC-TGCTGGTCAAGATAATATGTGAAG  998

seq1  CCCAATGCTGTCTTTTTATTCTAGAGTTTTAAAGAGATTGCTTAGTGCAT  1050
      |||||||||||||||||||||||||| |||||  ||||||||||||||||
seq2  CCCAATGCTGTCTTTTTATTCTAGAG-TTTAAGAAGATTGCTTAGTGCAT  1047

seq1  ATAAACATTTTGATTTTGTTGAAACTGCACAC-AAAATACCAAACAGGCA  1099
      ||||||| |||||||||| ||||||||||||| |||||||| ||||||||
seq2  ATAAACA-TTTGATTTTG-TGAAACTGCACACAAAAATACC-AACAGGCA  1094

seq1  TCATGAGGTCGGGGGGCTGGGGC-GGGAAGGGGGG  1133
      |||||| |||  ||||||||||| |||||||||||
seq2  TCATGA-GTC--GGGGCTGGGGCGGGGAAGGGGGG  1126

seq1: chr3_35470184_35471341
seq2: B6Ng01-096I04.g_69_1207 (reverse)

seq1  TGCTTTCTCTCCTCATGTCGAAGTTGTTAGGACCTGGGTAAAATATTAAG  50
      ||||||||||||||| ||||||| ||||||   |||||| ||||||| ||
seq2  TGCTTTCTCTCCTCA-GTCGAAG-TGTTAG--ACTGGGT-AAATATT-AG  44

seq1  GTCTAGATGGAATGTGAAGGCCTAGGTAAATTACCTGGCTAGCCTGCCAT  100
       ||||||| ||||||||||| ||||    || |||| ||||||  |||| 
seq2  TTCTAGAT-GAATGTGAAGG-CTAG---TATAACCT-GCTAGCTCGCCAA  88

seq1  TATAAGGAAAATTTTTCATATGTTTCTGCTGTTACTAGGAAACTTTCTAA  150
      ||  ||   || ||||||||| || |||||||||||||||||||||||||
seq2  TAATAG---AAATTTTCATATTTTCCTGCTGTTACTAGGAAACTTTCTAA  135

seq1  TGCCAAGATTGATTACATACTCTGTTACGTTCTGTGCCCTTGGAAACCAA  200
      || ||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TG-CAAGA-TGATTACATACTCTGTTACGTTCTGTGCCCTTGGAAACCAA  183

seq1  TCACGATGGAAGTCAGTAGAATTGCTTTATATAGTTACCCACAATAAGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGATGGAAGTCAGTAGAATTGCTTTATATAGTTACCCACAATAAGCT  233

seq1  TGGACCTGAACCAGCCACCCAGCAGCACTTCCTGTACCTGTGTATAAGCT  300
      |||| |||||||||||| ||||||||||||||||||||||||||||||||
seq2  TGGA-CTGAACCAGCCA-CCAGCAGCACTTCCTGTACCTGTGTATAAGCT  281

seq1  TTTATGGTATTTGCCTTTATAAACTAACTGCCTCTGGAATGGAACCCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATGGTATTTGCCTTTATAAACTAACTGCCTCTGGAATGGAACCCAAC  331

seq1  ATAAGAAGCTATTTGGAATAAGACTTCCATTTTGAGTAGGGGTTTGAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGAAGCTATTTGGAATAAGACTTCCATTTTGAGTAGGGGTTTGAGTA  381

seq1  AAGTTTAAGTTCCCGAGGCCTCCCTGAGAACTGGCATCCTAACTTGGCAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTAAGTTCCCGAGGCCTCCCTGAGAACTGGCATCCTAACTTGGCAG  431

seq1  AAAGAGATGTGTACATGGGCAACTGACATCCGGGTTGGCAAGTTAAGACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGATGTGTACATGGGCAACTGACATCCGGGTTGGCAAGTTAAGACA  481

seq1  TGAATTTTAGACAAGTCCCATCCTGGTAGGCAAGTTACAACATGGATATT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTTTAGACAAGTCCCATCCTGGTAGGCAAGTTACAACATGGATATT  531

seq1  AATTAGACAAGGCAAGTCCCTGCCACAGATGAATACCCCAACCAATGGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGACAAGGCAAGTCCCTGCCACAGATGAATACCCCAACCAATGGGA  581

seq1  GCAGGATAAGTGTAAAACAAAGATATGTTTCTAAGGAAATCACCCATCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGGATAAGTGTAAAACAAAGATATGTTTCTAAGGAAATCACCCATCCC  631

seq1  TAAATCCTGATTGGTGGAATAACTTGGCACAGATGTTTGTGGACTGGGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATCCTGATTGGTGGAATAACTTGGCACAGATGTTTGTGGACTGGGGG  681

seq1  GCTTAAAAACCCTGTAGGATCTTAACTGGGCGTGGGGGCATGGTTCAGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTAAAAACCCTGTAGGATCTTAACTGGGCGTGGGGGCATGGTTCAGTT  731

seq1  CCTAAATGTGGACCAGAGCCCTGGAAGACCAGTGCTGGGGAATATGCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAATGTGGACCAGAGCCCTGGAAGACCAGTGCTGGGGAATATGCTTG  781

seq1  ATAAACTATCCCTGTCTGACTGAGATTGGTGTTCATGTGGTTTGTGTGGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACTATCCCTGTCTGACTGAGATTGGTGTTCATGTGGTTTGTGTGGT  831

seq1  AATTCCTGGACCCAAACAGAATTGTAACAAAGTAAAGATGAAGTTGTCTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGGACCCAAACAGAATTGTAACAAAGTAAAGATGAAGTTGTCTG  881

seq1  AAGAGATAAGGGACAGACAGTTTCCTCACATGACAACTTAGAACTTGTCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGATAAGGGACAGACAGTTTCCTCACATGACAACTTAGAACTTGTCA  931

seq1  CAGTGAGCTGCCTTTCCATCCCATGTCCCCCGAAACATTTTTTTTTTTTT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGCTGCCTTTCCATCCCATGTCCCCCGAAACATTTTTTTTTTTTT  981

seq1  GGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTC  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTC  1031

seq1  ACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGTAGACCAGGCTGGCCTCAAACTCAGAAATCCGCCTGCCTCTGCC  1081

seq1  TCCCGAGTGCTGGGATTAAAGGCGTGCGCCAGCACACCTGGCTTCCTCGA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGAGTGCTGGGATTAAAGGCGTGCGCCAGCACACCTGGCTTCCTCGA  1131

seq1  AAGAATTC  1158
      ||||||||
seq2  AAGAATTC  1139