BAC Information

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BAC

Clone NameB6Ng01-096J20
Chromosome3 (Build37)
Map Location 107,983,494 - 107,984,386
singlet/doubletsinglet
Overlap genenone
Upstream geneKcna10, Gm131, A630076J17Rik, Prok1, Hbxip, Slc16a4, Rbm15, LOC383901, Kcnc4, Slc6a17, Ubl4b, Alx3, 6330569M22Rik, Ahcyl1, Csf1, LOC280047, Eps8l3, Gstm5, LOC671031, Gstm7, Gstm6, LOC668674, Gstm3, LOC624701, Gstm2, Gstm1, LOC100043641, Gstm4, Ampd2, Gnat2, Gnai3, Gpr61, LOC100043654
Downstream geneAmigo1, Cyb561d1, Atxn7l2, Sypl2, LOC668686, Psma5, Sort1, Mybphl, Psrc1, Celsr2, Sars, 5330417C22Rik, 1700013F07Rik, 2010200O16Rik, Taf13, Wdr47, LOC100043166, Clcc1, Gpsm2, 4921525H12Rik, Stxbp3a, Fndc7, Prpf38b, 4921515J06Rik, B430201A12Rik, 4930443G12Rik, Slc25a24
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096J20.bB6Ng01-096J20.g
ACCDH907216DH907217
length291901
definitionDH907216|Mus musculus domesticus DNA, BAC clone: B6Ng01-096J20, 5' end.DH907217|Mus musculus domesticus DNA, BAC clone: B6Ng01-096J20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
caagctcatctgcttcaaggattttttaggacattggaacactgatggag
gctcacctatgttaaaattcaatctttaaaggcacttataataaaacaat
actgaaagagagcatacaccatactgactcggggacagggttttaatata
tgggctatgagaatgccaaggttccaggaggctgagtttccttgaaactc
tttgccttgtgactgcctccaggcctttcgaccccaacaggcagacttca
ctggagtgggcatagcaggtggggagagggagggagaggga
gaattccctgcagctccccaagtccgatttttaaggggatttggtttttt
ttttaaattttttttgtcatgaacctgaaaatattttcttttcctgttca
tgcagccctctcttttgatttttaaaggcttttaagtctaaaattaaatt
ttagctaactctgagacttctcagctaattttcataccatacaggttctt
gagtagtttgcattgtgtctggagagcttaatattacagtttagaacgtt
atggttttcccacttagggacgaataattgttaaatgagtagctaaggat
ttctctttctgatctgtggccgtttgactaactcttggggtgaacaggtc
tttctcctctaacctttctttctttttgttttttgtttgttttatttttc
ttgtttgtttgtttgtttgtttgtttgtttgttttgagacaggctttctc
tacataaccttgactatcctggaactcactatatagatcaggatgtcctc
aaatgcacagaaacccacctatttctacctcccaagtgctgaaattaaaa
tcatgtgtcaccatgcccagtgttattatgctttctgcatccagttcaat
taggtttgaggaatttcaggcatttatactgtccttaattaattatgtta
attataattttggctgatctggcccttacctattaataagagagcatcaa
actgcctgtgttataagagatgcttaacagccacgtttcacaagctggaa
gagcaaaatagggctaggtgaagagagtgtccttttgtggtttagagtgc
agcctctgcaaccaggcttccctttccttgctctccctcactgtgacagg
ggcagggttatctaacctacacttgcagagacattaagaattcctggcct
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_107983494_107984386
seq2: B6Ng01-096J20.g_69_969 (reverse)

seq1  TAGG-CAGGTATTCTTATTGTCTCTGC-AGTGTAGGTTAAGTAA-CCTGC  47
      |||| |||| ||||||| ||||||||| |||||||||||  ||| |||||
seq2  TAGGCCAGGAATTCTTAATGTCTCTGCAAGTGTAGGTTAGATAACCCTGC  50

seq1  CCCTGTCACAGTGAGGGAGAGCAAGG-AACGGAAGCCTGGTTGCAGAGGC  96
      |||||||||||||||||||||||||| || ||||||||||||||||||||
seq2  CCCTGTCACAGTGAGGGAGAGCAAGGAAAGGGAAGCCTGGTTGCAGAGGC  100

seq1  TGCACTCTAAACCACAAAAGGACACTCTCTTC-CCTAGCCCTATTTTGCT  145
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGCACTCTAAACCACAAAAGGACACTCTCTTCACCTAGCCCTATTTTGCT  150

seq1  CTTCCAGCTTGTG-AACGTGGCTGTT-AGCATCTCTTATAACACAGGCAG  193
      ||||||||||||| |||||||||||| |||||||||||||||||||||||
seq2  CTTCCAGCTTGTGAAACGTGGCTGTTAAGCATCTCTTATAACACAGGCAG  200

seq1  TTTGATGCTCTCTTATT-ATAGGTAAGGGCCAGATCAGCCAAAATTATAA  242
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTGATGCTCTCTTATTAATAGGTAAGGGCCAGATCAGCCAAAATTATAA  250

seq1  TTAACATAATTAATTAAGGACAGTATAAATGCCTGAAATTCCTCAAACCT  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAACATAATTAATTAAGGACAGTATAAATGCCTGAAATTCCTCAAACCT  300

seq1  AATTGAACTGGATGCAGAAAGCATAATAACACTGGGCATGGTGACACATG  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGAACTGGATGCAGAAAGCATAATAACACTGGGCATGGTGACACATG  350

seq1  ATTTTAATTTCAGCACTTGGGAGGTAGAAATAGGTGGGTTTCTGTGCATT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTAATTTCAGCACTTGGGAGGTAGAAATAGGTGGGTTTCTGTGCATT  400

seq1  TGAGGACATCCTGATCTATATAGTGAGTTCCAGGATAGTCAAGGTTATGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGACATCCTGATCTATATAGTGAGTTCCAGGATAGTCAAGGTTATGT  450

seq1  AGAGAAAGCCTGTCTCAAAACAAACAAACAAACAAACAAACAAACAAACA  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAGCCTGTCTCAAAACAAACAAACAAACAAACAAACAAACAAACA  500

seq1  AGAAAAATAAAACAAACAAAAAACAAAAAGAAAGAAAGGTTAGAGGAGAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAATAAAACAAACAAAAAACAAAAAGAAAGAAAGGTTAGAGGAGAA  550

seq1  AGACCTGTTCACCCCAAGAGTTAGTCAAACGGCCACAGATCAGAAAGAGA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCTGTTCACCCCAAGAGTTAGTCAAACGGCCACAGATCAGAAAGAGA  600

seq1  AATCCTTAGCTACTCATTTAACAATTATTCGTCCCTAAGTGGGAAAACCA  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTTAGCTACTCATTTAACAATTATTCGTCCCTAAGTGGGAAAACCA  650

seq1  TAACGTTCTAAACTGTAATATTAAGCTCTCCAGACACAATGCAAACTACT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGTTCTAAACTGTAATATTAAGCTCTCCAGACACAATGCAAACTACT  700

seq1  CAAGAACCTGTATGGTATGAAAATTAGCTGAGAAGTCTCAGAGTTAGCTA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAACCTGTATGGTATGAAAATTAGCTGAGAAGTCTCAGAGTTAGCTA  750

seq1  AAATTTAATTTTAGACTTAAAAGCCTTTAAAAATCAAAAGAGAGGGCTGC  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTAATTTTAGACTTAAAAGCCTTTAAAAATCAAAAGAGAGGGCTGC  800

seq1  ATGAACAGGAAAAGAAAATATTTTCAGGTTCATGACAAAAAAACTTTAAA  842
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  ATGAACAGGAAAAGAAAATATTTTCAGGTTCATGACAAAAAAAATTTAAA  850

seq1  AAAAAAACCAAATCCCCTTAAAAATCGGACTTGGGGAGCTGCAGGGAATT  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAACCAAATCCCCTTAAAAATCGGACTTGGGGAGCTGCAGGGAATT  900

seq1  C  893
      |
seq2  C  901