BAC Information

Click to search

BAC

Clone NameB6Ng01-096N09
Chromosome3 (Build37)
Map Location 62,450,937 - 62,452,072
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC669910, LOC676965, 4631416L12Rik, Dhx36, Gpr149
Downstream geneLOC676984, LOC666967, Mme
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096N09.bB6Ng01-096N09.g
ACCDH907371DH907372
length7781,126
definitionDH907371|Mus musculus domesticus DNA, BAC clone: B6Ng01-096N09, 5' end.DH907372|Mus musculus domesticus DNA, BAC clone: B6Ng01-096N09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcagcaatacctcttctgggcatatccaacttgtaataaggacaca
tgctccactatgttcatagcagccttatttataacagccagaagctggaa
agaacccagatgtccttcaacagaggaatggatgcagaaaatgtggtaca
tttacacaatagagtactactcagctgttaaaaacaatgacttcatgaaa
ttcttaggcaaactagaaaatatcatcctgtgtgaggtagcctagtcaca
aaagaacactcatggtgtgcacacactgataaatagatattagcccaaaa
gtttggaatacccaagattcaatttacaaatcgtatgaagcccaagaagg
aagacccaagtgtagatgctacagctcttcttagaagggggaacaaaata
ctcacaggaagaaatatggagacaaagtgtggagcaaagactaaaggaaa
ggccttatacagaggcagatgatctcagctaaccattgagctgatcacag
ggttccaagtggaggaggtagagaaaagactaaaggagctaaaggggttt
acatccgcctctgtataagtcaggctctggcagagcttttcaggagacag
ctatatcaggctcctgtcagcatgtacttcttgtcatccacaatagtgtc
tgggtttggtggctgtatgtgggatagatctccaggtgggacagtctgtg
gatggcccttggtcactgtgaaggcttgatgccccagtgtagggaaattc
cagggcggggaggtggggtggggtgggg

gaattctttgtttagctctgagccccatcttttaagggggttatttgata
ttctggagtccaccctcttgaattctttatatatattggatattagtccc
ctatctgatttaagataggtaaagatcctttcccaatctgttggtggcct
ttttgtcttattgacttttgtcaataagacttttgtcttattgacttttg
tctttttgtcttttgccttgcagaagctttgaagtttcatgaggtcccat
ttgtcaatcctcgatcttacagcacaagccattgctgttctattcaggaa
ttttttcccctgtgcccatatctttgaggctttcccccactttctcctct
ataagtttcagtgtctctggttttatgtgaagttccttgatccacttaga
tttgaccttagtacaaggagataggaatggatcgattcacattcttctac
atgatcttattgcttttctatgtggaatatttgcaggagctgttccttgc
attggaaggtcttggccactcaaagaagttgaatatgcaccctctgatat
cactcttggccttcctttctagcttcctttagttgtgcttgccctaaatt
catagttcagcatttcctttcttctgtcagtctccagatgatctgtgcta
gaaatctttcagcatgactctggctgtgatttaagacagtttctcttttt
agttctttcttcctcagttttgtgtcctgcctctagccaactctcaaatt
ctcccactgacaacagtggctctgagaagtcacctgaaactctttctgtc
ttaagacaaggagtcagtaaggacccccatcttgtgcattcacaatctgt
atgttttcttctagagccagcagatcatgtccagtcttaacagaagagac
atacagttctgtgaaggcctatgagggagactatggccctattgctggtt
agttttctattatttaaccaatatatgaggcaattaatgataagggaaag
tatttgcttccacagctctatgtttgtggtgttggtggtggccacatgct
ttgttcatgatggcaattgggtaaaggaattcagtggagcaaacagtcat
cttacgatgggagtgaaaagacaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_62450937_62452072
seq2: B6Ng01-096N09.g_68_1193

seq1  GAATTCTTTGTTTAGCTCTGAGCCCCATCTTTTAAGGGGGTTATTTGATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGAGCCCCATCTTTTAAGGGGGTTATTTGATA  50

seq1  TTCTGGAGTCCACCCTCTTGAATTCTTTATATATATTGGATATTAGTCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGAGTCCACCCTCTTGAATTCTTTATATATATTGGATATTAGTCCC  100

seq1  CTATCTGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGATTTAAGATAGGTAAAGATCCTTTCCCAATCTGTTGGTGGCCT  150

seq1  TTTTGTCTTATTGACTTTTGTCAATAAGACTTTTGTCTTATTGACTTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTCTTATTGACTTTTGTCAATAAGACTTTTGTCTTATTGACTTTTG  200

seq1  TCTTTTTGTCTTTTGCCTTGCAGAAGCTTTGAAGTTTCATGAGGTCCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTGTCTTTTGCCTTGCAGAAGCTTTGAAGTTTCATGAGGTCCCAT  250

seq1  TTGTCAATCCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAATCCTCGATCTTACAGCACAAGCCATTGCTGTTCTATTCAGGAA  300

seq1  TTTTTTCCCCTGTGCCCATATCTTTGAGGCTTTCCCCCACTTTCTCCTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCCCCTGTGCCCATATCTTTGAGGCTTTCCCCCACTTTCTCCTCT  350

seq1  ATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGTTTCAGTGTCTCTGGTTTTATGTGAAGTTCCTTGATCCACTTAGA  400

seq1  TTTGACCTTAGTACAAGGAGATAGGAATGGATCGATTCACATTCTTCTAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACCTTAGTACAAGGAGATAGGAATGGATCGATTCACATTCTTCTAC  450

seq1  ATGATCTTATTGCTTTTCTATGTGGAATATTTGCAGGAGCTGTTCCTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATCTTATTGCTTTTCTATGTGGAATATTTGCAGGAGCTGTTCCTTGC  500

seq1  ATTGGAAGGTCTTGGCCACTCAAAGAAGTTGAATATGCACCCTCTGATAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGAAGGTCTTGGCCACTCAAAGAAGTTGAATATGCACCCTCTGATAT  550

seq1  CACTCTTGGCCTTCCTTTCTAGCTTCCTTTAGTTGTGCTTGCCCTAAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGGCCTTCCTTTCTAGCTTCCTTTAGTTGTGCTTGCCCTAAATT  600

seq1  CATAGTTCAGCATTTCCTTTCTTCTGTCAGTCTCCAGATGATCTGTGCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTTCAGCATTTCCTTTCTTCTGTCAGTCTCCAGATGATCTGTGCTA  650

seq1  GAAATCTTTCAGCATGACTCTGGCTGTGATTTAAGACAGTTTCTCTTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCTTTCAGCATGACTCTGGCTGTGATTTAAGACAGTTTCTCTTTTT  700

seq1  AGTTCTTTCTTCCTCAGTTTTGTGTCCTGCCTCTAGCCAACTCTCAAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCTTTCTTCCTCAGTTTTGTGTCCTGCCTCTAGCCAACTCTCAAATT  750

seq1  CTCCCACTGACAACAGTGGCTCTGAGAAGTCACCTGAAACTCTTTCTGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCACTGACAACAGTGGCTCTGAGAAGTCACCTGAAACTCTTTCTGTC  800

seq1  TTAAGACAAGGAGTCAGTAAGGACCCCCATCTTGTGCATTCACAATCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGACAAGGAGTCAGTAAGGACCCCCATCTTGTGCATTCACAATCTGT  850

seq1  ATGTTTTCTTCTAGAGCCAGCAGATCATGTCCAGTCTTAACAGAAGAGAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCTTCTAGAGCCAGCAGATCATGTCCAGTCTTAACAGAAGAGAC  900

seq1  ATACAGTTCTGTGAAGGCCTATGAGGGAGACTATGGCCCTATTGCTGGTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGTTCTGTGAAGGCCTATGAGGGAGACTATGGCCCTATTGCTGGTT  950

seq1  AGTTTTCTATTAATTTAACCAATATATGAGGCAATAAATTGATAAAGGGA  1000
      ||||||||||| ||||||||||||||||||||||| || |||| ||||||
seq2  AGTTTTCTATT-ATTTAACCAATATATGAGGCAATTAA-TGAT-AAGGGA  997

seq1  AAGTATTTTGCTT-CACAGCTCTATGTTTTGTTGGTGGTTGGT-GTGGCC  1048
      ||||| ||||||| |||||||||||||||   |||| |||||| ||||||
seq2  AAGTA-TTTGCTTCCACAGCTCTATGTTT--GTGGT-GTTGGTGGTGGCC  1043

seq1  ACATGCTTTTGTTCTATGATGGCATATTGTGGT--AGGTATTCAGTTGAG  1096
      |||||| ||||||| ||||||||| |||| |||  ||| ||||||| |||
seq2  ACATGC-TTTGTTC-ATGATGGCA-ATTG-GGTAAAGGAATTCAGTGGAG  1089

seq1  CAAAACCAGTCATTCTACAGATGGGAAGTG-AAAGACAATC  1136
      ||||  |||||||  ||| |||||| |||| ||||||||||
seq2  CAAA--CAGTCATCTTAC-GATGGG-AGTGAAAAGACAATC  1126


| Home | SequenceCutter | Blast | Download |