BAC Information

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BAC

Clone NameB6Ng01-096O12
Chromosome3 (Build37)
Map Location 51,004,328 - 51,234,895
singlet/doubletdoublet
Overlap geneCcrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1
Upstream geneLOC100039628, LOC639469, Slc7a11, EG621304, LOC100039667
Downstream geneRab33b, Setd7, LOC100039684, Mgst2, Maml3, LOC433587, LOC100039788, LOC671890, Olfr1398-ps1, Foxo1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096O12.bB6Ng01-096O12.g
ACCDH907422DH907423
length758323
definitionDH907422|Mus musculus domesticus DNA, BAC clone: B6Ng01-096O12, 5' end.DH907423|Mus musculus domesticus DNA, BAC clone: B6Ng01-096O12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,234,143 - 51,234,895)(51,004,328 - 51,004,650)
sequence
gaattcagatctcctgacagcaataagcatttttttttaattttattatt
ttatttttatttttgctttgttttgttttgttttgtttttcgagacaggg
tttctctgtgtagtccaggctgtcctggaactcgctttgtagaccaggct
ggccttaaactcagaaatatgcctgcctctgcctccactgcccggcagca
ataagcatcttaatcactaaactatgtctctaacccacacatgccttcat
ttttattaaagtctcattttgctgttttgttggggacttgatttggggga
taggatctttctatgtagcccaggctagtctagaacttggcttccagagt
ggattgctgagattacacacatgtaccatcttgcttgttatctttgtaat
gctgtgctaggcctaggcccatttgccccatatgctatacatttaggttt
ttttttttcttaaagatttatttattgattatatgttaagtacactgtag
ctgtcttcagacactccagaagagggagtcagatctcgttaccgatggtt
gtgagccaccatgtggttgctgggatttgaactccggaccttcggaagag
cagtcgggtgctctttacccactgagccatctcaccagcccgggacattt
agttttttattacagcctttccacaatgcattgtcttttaggaacttgta
tgccgagatacagattagaaatttgttttgttttgttttatttttggaaa
aagtgttt
catacaagcaatggaatttccatcctaagctaactcagcttctcttgtgc
tgccctggaaacggctagtgtgccaaagctggctgctctgtcctggaaaa
caggtttggtcaccgagaaagcagggagggtgccctcatgtcacccacaa
tcccacacaaaagggagcaaatgtcagtccaccctccctcctgcctctct
ctaaggaagggaattcaacccaaactctgtcccccgggaagaaaacagaa
ttttgcttttttttttttagacagagtctcaagtgctaatgcaggactcc
atatatatgtggggggggggggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_51234143_51234895
seq2: B6Ng01-096O12.b_46_803 (reverse)

seq1  AAACACTATCTCCAAAAATAAAACAAAACAAAACAAA-TTCT-ATCTGTA  48
      ||||||| | ||||||||||||||||||||||||||| |||| |||||||
seq2  AAACACTTTTTCCAAAAATAAAACAAAACAAAACAAATTTCTAATCTGTA  50

seq1  TCTCGGCATACAAGTTCCTAAAAGACACTGCATTGTGGAAAGGCTGTAAT  98
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  TCTCGGCATACAAGTTCCTAAAAGACAATGCATTGTGGAAAGGCTGTAAT  100

seq1  -AAAAACTAAATGT-CCGGGCTGGTGAGATGGCTCAGTGGGT-AAGAGCA  145
       ||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  AAAAAACTAAATGTCCCGGGCTGGTGAGATGGCTCAGTGGGTAAAGAGCA  150

seq1  CCCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGG  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCGACTGCTCTTCCGAAGGTCCGGAGTTCAAATCCCAGCAACCACATGG  200

seq1  TGGCTCACAACCATCGGTAACGAGATCTGACTCCCTCTTCTGGAGTGTCT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTCACAACCATCGGTAACGAGATCTGACTCCCTCTTCTGGAGTGTCT  250

seq1  GAAGACAGCTACAGTGTACTTAACATATAATCAATAAATAAATCTTTAAG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGCTACAGTGTACTTAACATATAATCAATAAATAAATCTTTAAG  300

seq1  AAAAAAAAAAACCTAAATGTATAGCATATGGGGCAAATGGGCCTAGGCCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAACCTAAATGTATAGCATATGGGGCAAATGGGCCTAGGCCT  350

seq1  AGCACAGCATTACAAAGATAACAAGCAAGATGGTACATGTGTGTAATCTC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAGCATTACAAAGATAACAAGCAAGATGGTACATGTGTGTAATCTC  400

seq1  AGCAATCCACTCTGGAAGCCAAGTTCTAGACTAGCCTGGGCTACATAGAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAATCCACTCTGGAAGCCAAGTTCTAGACTAGCCTGGGCTACATAGAA  450

seq1  AGATCCTATCCCCCAAATCAAGTCCCCAACAAAACAGCAAAATGAGACTT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCCTATCCCCCAAATCAAGTCCCCAACAAAACAGCAAAATGAGACTT  500

seq1  TAATAAAAATGAAGGCATGTGTGGGTTAGAGACATAGTTTAGTGATTAAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAATGAAGGCATGTGTGGGTTAGAGACATAGTTTAGTGATTAAG  550

seq1  ATGCTTATTGCTGCCGGGCAGTGGAGGCAGAGGCAGGCATATTTCTGAGT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTATTGCTGCCGGGCAGTGGAGGCAGAGGCAGGCATATTTCTGAGT  600

seq1  TTAAGGCCAGCCTGGTCTACAAAGCGAGTTCCAGGACAGCCTGGACTACA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGCCAGCCTGGTCTACAAAGCGAGTTCCAGGACAGCCTGGACTACA  650

seq1  CAGAGAAACCCTGTCTCGAAAAACAAAACAAAACAAAACAAAGCAAAAAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAAACCCTGTCTCGAAAAACAAAACAAAACAAAACAAAGCAAAAAT  700

seq1  AAAAATAAAATAATAAAATTAAAAAAAAATGCTTATTGCTGTCAGGAGAT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATAAAATAATAAAATTAAAAAAAAATGCTTATTGCTGTCAGGAGAT  750

seq1  CTGAATTC  753
      ||||||||
seq2  CTGAATTC  758

seq1: chr3_51004328_51004650
seq2: B6Ng01-096O12.g_74_396

seq1  CATACAAGCAATGGAATTTCCATCCTAAGCTAACTCAGCTTCTCTTGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACAAGCAATGGAATTTCCATCCTAAGCTAACTCAGCTTCTCTTGTGC  50

seq1  TGCCCTGGAAACGGCTAGTGTGCCAAAGCTGGCTGCTCTGTCCTGGAAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCCTGGAAACGGCTAGTGTGCCAAAGCTGGCTGCTCTGTCCTGGAAAA  100

seq1  CAGGTTTGGTCACCGAGAAAGCAGGGAGGGTGCCCTCATGTCACCCACAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTTTGGTCACCGAGAAAGCAGGGAGGGTGCCCTCATGTCACCCACAA  150

seq1  TCCCACACAAAAGGGAGCAAATGTCAGTCCACCCTCCCTCCTGCCTCTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACACAAAAGGGAGCAAATGTCAGTCCACCCTCCCTCCTGCCTCTCT  200

seq1  CTAAGGAAGGGAATTCAACCCAAACTCTGTCCCCCGGGAAGAAAACAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAGGAAGGGAATTCAACCCAAACTCTGTCCCCCGGGAAGAAAACAGAA  250

seq1  TTTTGCTTTTTTTTTTTTAGACAGAGTCTCAAGTGCTAATGCAGGACTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTTTTTTTTTTTTAGACAGAGTCTCAAGTGCTAATGCAGGACTCC  300

seq1  ATATATATGTGGGGGGGGGGGGG  323
      |||||||||||||||||||||||
seq2  ATATATATGTGGGGGGGGGGGGG  323