BAC Information

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BAC

Clone NameB6Ng01-096P09
Chromosome3 (Build37)
Map Location 91,643,392 - 91,644,401
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC635737, EG668174, LOC668179, LOC635756, 4930529C04Rik, 9130204L05Rik, LOC100042463
Downstream genePglyrp3, EG619750, Lor, A030004J04Rik, Sprr2a, LOC100042999, LOC545543, LOC100043005, LOC545545, LOC100042514, LOC619984, Sprr2b, Sprr2c, Sprr2d, Sprr2e, Sprr2f, Sprr2g, Sprr2h, Sprr2i, Sprr2j, LOC100043022, Sprr2k, Sprr1b, Sprr3, LOC100042575, Sprr1a, Sprr4, LOC100042581, Ivl, Smcp, Lce1a1, Lce1b, LOC620325, Lce1a2, Lce1c, Lce1d, LOC100043062, Lce1e, Lce1f, LOC668264, Lce1g, Lce1h, Lce1i, LOC545547, LOC631101, Kprp
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096P09.bB6Ng01-096P09.g
ACCDH907460DH907461
length1,1131,012
definitionDH907460|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P09, 5' end.DH907461|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P09, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttcattgtgtcccataagtttgggtattttgtgttttcatttt
cattaaactctaaaaagtcttgaatttttttctttatttcttctttgacc
gagttatcattaagaagattgttgttcactttccatgtgaatgttggctt
tatgttcttattgaagatcagccttaaaaatggtgatctaatagaataca
tatgacaatttcaatatttttgtatctgttgaggtctgttttttgaccaa
ttttatggaaaattttggagaaggtaccatgaggttctgagaagaaggta
tattcttttgttttaggataaaatattctgtaggtatctggtaaatccat
ttgtttcataaattctgttcgtttcactgtgtctctgtttagtttctctt
tccaggatctgtccaatgatgagagtgggctgtttaagtctcccactgtt
attgtgtgaggtgcaatgtgtgctttgagttttactaaagtttctttaat
gaatgtggctgcccttgcatttggagcatagatattcagaattgagtgtt
cctcttggaagattttacctttgatgagtatgaagtgccaatccttgtct
tttttgataactttgggttggaagtcaattttattcgatattagaatcac
tgctccagcttgtttcttcagaccatttgctttgaaaattgttttccagc
ctttcattctgaggtagtgtctgtctttttccctgagatgggtttcctgt
aagcagcagaatattgggtcctgtttgtgtagccagtctgttagtctata
tttttttttttattggggaattgagtccattgatattaagagatattaag
gaaaagtaattgttgcttcctgttatttttgttgttagtgttgggattct
gttcttgcagctgtcttcttttagtttgttgaaggatactttattgcttt
ttctctggcgtagtttccgtccttgtattgtctttttcccctttattatc
ttcgaaagggctgattcgtggaaagatatgtgtgatttgtttgtatggat
attggctctcatctgataattgagagttgctgggtagaaacctggccggc
attggtcttcttg
gaattcattggggaagttgtgtgcagctgaacaagtactgtctatgataa
tcttctgttgtttgctggacaattagtggggacatgcgaatgaaaggatc
tgtacctcaagagtgtgtatgaatgaattttaatattgaacaatcttggc
atatgttctataaggagtagcactaatgttcatttccaagggtatacctc
tgttacctgaaatgaaatgcagaccagaggcatttttagggaactatagt
tacctgctccctgcatcagtcatctcattcccaagtgtcccaatggtggg
ggttttgtggatttgatgggatttcttggacttaattatacctggaggac
aagcttctaagcagtcaaaaatgagacaattatctgcatgcattgagatt
catgaattttcatgtgtcctttgtctttgaagggcactttttcacaggag
agaaaaagatgaatagaatttttaaaaataatatgagaagagaaaattaa
ggaagaaaaataacatgcatattcaaaaaacaatctcccagtataaagat
tgatacatgttggtaatcagtgatttcttggatgcttaaggaaacagttc
tttctagaatctgaattccactgagggcatcttagacttgtgccttagat
gagattgagttgcaaaaagccatgcatctttattcaaggatcttcgtatg
gatcctgtgtctcctagtatgggaggctcatgaaattcaacagactgaga
ccaaaggcatactcagacacttaagaaaatctcagaagaggaagtagagt
cttccatagacctgctatatacattttagtgatcttccagacaacatttg
taccacagttttcccaaatgagagaatctaaatgtccattgggatactta
gctttgagaggccaaatgttgcttagctcataagtaagagcttgttaata
tgaatagcagaaaaggagacgtgaaactataccccagctatttcccttgt
cattgttgaaag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_91643392_91644401
seq2: B6Ng01-096P09.g_67_1078

seq1  GAATTCATTGGGGAAGTTGTGTGCAGCTGAACAAGTACTGTCTATGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTGGGGAAGTTGTGTGCAGCTGAACAAGTACTGTCTATGATAA  50

seq1  TCTTCTGTTGTTTGCTGGACAATTAGTGGGGACATGCGAATGAAAGGATC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGTTGTTTGCTGGACAATTAGTGGGGACATGCGAATGAAAGGATC  100

seq1  TGTACCTCAAGAGTGTGTATGAATGAATTTTAATATTGAACAATCTTGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACCTCAAGAGTGTGTATGAATGAATTTTAATATTGAACAATCTTGGC  150

seq1  ATATGTTCTATAAGGAGTAGCACTAATGTTCATTTCCAAGGGTATACCTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTCTATAAGGAGTAGCACTAATGTTCATTTCCAAGGGTATACCTC  200

seq1  TGTTACCTGAAATGAAATGCAGACCAGAGGCATTTTTAGGGAACTATAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTACCTGAAATGAAATGCAGACCAGAGGCATTTTTAGGGAACTATAGT  250

seq1  TACCTGCTCCCTGCATCAGTCATCTCATTCCCAAGTGTCCCAATGGTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGCTCCCTGCATCAGTCATCTCATTCCCAAGTGTCCCAATGGTGGG  300

seq1  GGTTTTGTGGATTTGATGGGATTTCTTGGACTTAATTATACCTGGAGGAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGTGGATTTGATGGGATTTCTTGGACTTAATTATACCTGGAGGAC  350

seq1  AAGCTTCTAAGCAGTCAAAAATGAGACAATTATCTGCATGCATTGAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCTAAGCAGTCAAAAATGAGACAATTATCTGCATGCATTGAGATT  400

seq1  CATGAATTTTCATGTGTCCTTTGTCTTTGAAGGGCACTTTTTCACAGGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGAATTTTCATGTGTCCTTTGTCTTTGAAGGGCACTTTTTCACAGGAG  450

seq1  AGAAAAAGATGAATAGAATTTTTAAAAATAATATGAGAAGAGAAAATTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGATGAATAGAATTTTTAAAAATAATATGAGAAGAGAAAATTAA  500

seq1  GGAAGAAAAATAACATGCATATTCAAAAAACAATCTCCCAGTATAAAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAAAAATAACATGCATATTCAAAAAACAATCTCCCAGTATAAAGAT  550

seq1  TGATACATGTTGGTAATCAGTGATTTCTTGGATGCTTAAGGAAACAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACATGTTGGTAATCAGTGATTTCTTGGATGCTTAAGGAAACAGTTC  600

seq1  TTTCTAGAATCTGAATTCCACTGAGGGCATCTTAGACTTGTGCCTTAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAGAATCTGAATTCCACTGAGGGCATCTTAGACTTGTGCCTTAGAT  650

seq1  GAGATTGAGTTGCAAAAAGCCATGCATCTTTATTCAAGGATCTTCGTATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTGAGTTGCAAAAAGCCATGCATCTTTATTCAAGGATCTTCGTATG  700

seq1  GATCCTGTGTCTCCTAGTATGGGAGGCTCATGAAATTCAACAGACTGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGTGTCTCCTAGTATGGGAGGCTCATGAAATTCAACAGACTGAGA  750

seq1  CCAAAGGCATACTCAGACACTTAAGAAAATCTCAGAAGAGGAAGTAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGGCATACTCAGACACTTAAGAAAATCTCAGAAGAGGAAGTAGAGT  800

seq1  CTTCCATAGACCTGCTATATACA-TTTAGTGATCTTCCAGACAACATTTG  849
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  CTTCCATAGACCTGCTATATACATTTTAGTGATCTTCCAGACAACATTTG  850

seq1  TACCACAGTTTTCCCAAATGAGAGAATCT-AATGTCCATTGGGATACTAA  898
      ||||||||||||||||||||||||||||| |||||||||||||||||| |
seq2  TACCACAGTTTTCCCAAATGAGAGAATCTAAATGTCCATTGGGATACTTA  900

seq1  GCTTTGAGAGGCCAAATGTTGCCTAGCTCATAAGTAAGAGCTTGTGAATA  948
      |||||||||||||||||||||| |||||||||||||||||||||| ||||
seq2  GCTTTGAGAGGCCAAATGTTGCTTAGCTCATAAGTAAGAGCTTGTTAATA  950

seq1  TGAAATAGCAGAAAAGGAGACGTGAAACTATACCCCAGCATATTT-CCTT  997
      || |||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  TG-AATAGCAGAAAAGGAGACGTGAAACTATACCCCAGC-TATTTCCCTT  998

seq1  GTCA-TGTTGAAAG  1010
      |||| |||||||||
seq2  GTCATTGTTGAAAG  1012