BAC Information

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BAC

Clone NameB6Ng01-096P14
Chromosome3 (Build37)
Map Location 81,769,641 - 81,879,624
singlet/doubletdoublet
Overlap geneTdo2, Accn5, Gucy1b3
Upstream geneEG626841, Pdgfc, LOC229443, LOC100041901, Ctso
Downstream geneGucy1a3, Mtap9, Npy2r, LOC100041940, EG633285, Lrat, Fgg, Fga, Fgb, Plrg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096P14.bB6Ng01-096P14.g
ACCDH907470DH907471
length1,1411,187
definitionDH907470|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P14, 5' end.DH907471|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(81,769,641 - 81,770,790)(81,878,451 - 81,879,624)
sequence
gaattctttgtgggaataatgcctattcctgggtggttaataacattgag
acgggttgttgaattcatgtatatgaatgtcacatgtgaatgagaaagta
tgaaggcaggatgatgagaatttcgtgggagacaaagctacaagtaacat
aacattatcaaaatgctttaaaacatgaatacacagtcataatcctttgg
aatagacatccttactttacatttggcctgaaagaaaaattatgcaggaa
gtaatttttattgtgacagaggtctaccatttaaatgaaagttgaacctg
tatcagatgatttttgaagtacgtggtttaagaacctgtattggctagtt
ttgtgtcaacttgacacagctggagttatcacagagaaaggagcttcagt
tgaggaaatgcctccatgagattcaactgtcaggcattttctcaattagt
gaccaagggggaaaggccccttgtaggtgggaccatctctgggctggtag
ccttggttctataagagagcaggctgagcaagccaggggaggcaagccag
taaagaacatccctccatggcctctgcatcagctcctgctttctgacctg
cttgagttccagtcctgacttcctttggtgatgaacagcagtatggaagt
gtaagctgaataaaccctttcctccccaacttgcttcttggtcatgatgt
ttgtgcaggaatagaaaccctgactaagacagaacccattctcaatgtgg
caaggttgaatggctaaagaagtgaaaccatgaagacaaggtgcaagacc
tgtattcccaagaatatttggagacaatttcatttaaaaagtaagggtca
aatgggtattgtctgtagccaatgaaggtgatctagcaaaataatagcaa
aataaaaataataataataaaaataatagcaaaggaaaacatatgtggtt
aaatatattttcctagtttctttcttctgtgccacttgggccttgaattg
atcaacgtatataattttcaactagaataaaaacttatcatccatgtaaa
caatattgtgattacaacaggtaaaatcttcttataagtgaagtcttatt
tgcataatttttttactatggagaaaggtaatccatcatgt
gaattctaactcctgggttgtaatatggcctgtcctgtaaagttcacaga
caagatggcttaacgttttgctcacaattatgtttgcacatgaagtatct
atcctccaagaagatacatgaagtatctatcctccgagaaggtacttgag
agcatattccccagctgggaaataccagtttggaaacttctggaagcctt
tttggagtttgtaagtagaccactgtgggtgtccttgggaactgtaagcc
tctactgggcccacctgtgtgtctctgtaatgaactaaacagcctcggcc
attctctcagccaccatggagttgggctgttccacacgccccaaagcaac
ggagacaaaaaaaaaagcgaaaacaaaaacaaaaaacgatggatctctaa
aaaccacaggcaaaaacatgaattctgctggttaatgtcaggtattttgt
ctcaatggcaaaaagtctaatgcagttgctaaacctcttgtatattacaa
aacatcttagtttgtgcacttgattattaacttaattgactaaaagtaaa
aatgttaattttgtaggattagctatgtttgccagctgttgctaggtaaa
gcaacagaggaaatgtttatgtgcataactacaaaaaacatgacgatgtt
aatcaacactgggcgcgcgcgcgcgcacacacacacacacacacacacac
acacacacacacacacacgcccaagctctaggacattagaacagatgtac
gaggatgacaatgacaataccccatccatgctggaaggagcacagctggt
tctgttctatctgccttaagggccttcaaaagaaatgacttgtcaccaga
ctggggcgggaaaatgtttgagcacagttagctctgagcccatctgaatt
ccctcctctgtcactgattggctaagatatgggaaaaaaacagcgcccag
cctcctgcggctccactcgtcattggcctgaaaagaaggtggcaattcag
gagttggccgagactgatgcccctagctttcagcttttgttgctggtctg
gagcactgttcgccgctgtagtcgctgttcttgggttcccttccgcgtac
tcttgcctgaaagcctgctcctaggctccggccgcgaacaccatgttagt
gccttaggatggtcagcgaaaattacacacctgagcg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_81769641_81770790
seq2: B6Ng01-096P14.b_50_1190

seq1  GAATTCTTTGTGGGAATAATGCCTATTCCTGGGTGGTTAATAACATTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTGGGAATAATGCCTATTCCTGGGTGGTTAATAACATTGAG  50

seq1  ACGGGTTGTTGAATTCATGTATATGAATGTCACATGTGAATGAGAAAGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGGGTTGTTGAATTCATGTATATGAATGTCACATGTGAATGAGAAAGTA  100

seq1  TGAAGGCAGGATGATGAGAATTTCGTGGGAGACAAAGCTACAAGTAACAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCAGGATGATGAGAATTTCGTGGGAGACAAAGCTACAAGTAACAT  150

seq1  AACATTATCAAAATGCTTTAAAACATGAATACACAGTCATAATCCTTTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTATCAAAATGCTTTAAAACATGAATACACAGTCATAATCCTTTGG  200

seq1  AATAGACATCCTTACTTTACATTTGGCCTGAAAGAAAAATTATGCAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGACATCCTTACTTTACATTTGGCCTGAAAGAAAAATTATGCAGGAA  250

seq1  GTAATTTTTATTGTGACAGAGGTCTACCATTTAAATGAAAGTTGAACCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATTTTTATTGTGACAGAGGTCTACCATTTAAATGAAAGTTGAACCTG  300

seq1  TATCAGATGATTTTTGAAGTACGTGGTTTAAGAACCTGTATTGGCTAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGATGATTTTTGAAGTACGTGGTTTAAGAACCTGTATTGGCTAGTT  350

seq1  TTGTGTCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTCAACTTGACACAGCTGGAGTTATCACAGAGAAAGGAGCTTCAGT  400

seq1  TGAGGAAATGCCTCCATGAGATTCAACTGTCAGGCATTTTCTCAATTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGAAATGCCTCCATGAGATTCAACTGTCAGGCATTTTCTCAATTAGT  450

seq1  GACCAAGGGGGAAAGGCCCCTTGTAGGTGGGACCATCTCTGGGCTGGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAAGGGGGAAAGGCCCCTTGTAGGTGGGACCATCTCTGGGCTGGTAG  500

seq1  CCTTGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGGGAGGCAAGCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGGTTCTATAAGAGAGCAGGCTGAGCAAGCCAGGGGAGGCAAGCCAG  550

seq1  TAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTTCTGACCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAACATCCCTCCATGGCCTCTGCATCAGCTCCTGCTTTCTGACCTG  600

seq1  CTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAGTATGGAAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGAGTTCCAGTCCTGACTTCCTTTGGTGATGAACAGCAGTATGGAAGT  650

seq1  GTAAGCTGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCTGAATAAACCCTTTCCTCCCCAACTTGCTTCTTGGTCATGATGT  700

seq1  TTGTGCAGGAATAGAAACCCTGACTAAGACAGAACCCATTCTCAATGTGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGCAGGAATAGAAACCCTGACTAAGACAGAACCCATTCTCAATGTGG  750

seq1  CAAGGTTGAATGGCTAAAGAAGTGAAACCATGAAGACAAGGTGCAAGACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGTTGAATGGCTAAAGAAGTGAAACCATGAAGACAAGGTGCAAGACC  800

seq1  TGTATTCCCAAGAATATTTGGAGACAATTTCATTTAAAAAGTAAGGGTCA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCCCAAGAATATTTGGAGACAATTTCATTTAAAAAGTAAGGGTCA  850

seq1  AATGGGTATTGTCTGTAGCCAATGAAGGTGATCTAGCAAAAATAATAGCA  900
      ||||||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AATGGGTATTGTCTGTAGCCAATGAAGGTGATCTAGC-AAAATAATAGCA  899

seq1  AAATAAAAATAATAATAATAAAAATAATAGCAAAGGAAAACATATGTGGT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAAATAATAATAATAAAAATAATAGCAAAGGAAAACATATGTGGT  949

seq1  TAAATATATTTTCCTAGTTTCTTTCTTCTGTGCCACTTGGGCCTTGAATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATATATTTTCCTAGTTTCTTTCTTCTGTGCCACTTGGGCCTTGAATT  999

seq1  GATCAACGTATATAATTTTCAACTAGAATAAAAACTTATCAATCCCATGT  1050
      |||||||||||||||||||||||||||||||||||||||||   ||||||
seq2  GATCAACGTATATAATTTTCAACTAGAATAAAAACTTATCA--TCCATGT  1047

seq1  AAACAATA-TGTGATAACAACAAGTAAAAATCCTTCTTTATAGTGAAGGT  1099
      |||||||| |||||| |||||| ||||||   ||||||   |||||| ||
seq2  AAACAATATTGTGATTACAACAGGTAAAA--TCTTCTTATAAGTGAA-GT  1094

seq1  CTTATTTTGGCATAATTTTTATACCTATGGAGAAAGGTAATTCAATCATG  1149
      |||||||  ||||||||||| || |||||||||||||||| || ||||||
seq2  CTTATTT--GCATAATTTTTTTA-CTATGGAGAAAGGTAA-TCCATCATG  1140

seq1  T  1150
      |
seq2  T  1141

seq1: chr3_81878451_81879624
seq2: B6Ng01-096P14.g_67_1253 (reverse)

seq1  CGCTCAGGTGTG-ATGTTCCGCTGACCATCCTGACAGCACTCACCATGGT  49
      |||||||||||| |  || ||||||||||||| |  ||||| | ||||||
seq2  CGCTCAGGTGTGTAATTTTCGCTGACCATCCT-AAGGCACT-AACATGGT  48

seq1  GTCCGCGCCCGGAGCCTAGGAAGCA-GCTTCCAGGCAAGAGTACCGCGGA  98
      || |||| |||||||||||| |||| |||| |||||||||||| ||||||
seq2  GTTCGCGGCCGGAGCCTAGG-AGCAGGCTTTCAGGCAAGAGTA-CGCGGA  96

seq1  AGGG-ACCCA--GACAGCGACTACAGCGGCG-ACAGTGCTCCCAGACCAG  144
      |||| |||||   |||||||||||||||||| |||||||| |||||||||
seq2  AGGGAACCCAAGAACAGCGACTACAGCGGCGAACAGTGCT-CCAGACCAG  145

seq1  CA--CAGAGCTG-AAGCTA-GGGCATCAGTCTCGGCCAACT-CTG-ATTG  188
      ||   | ||||| |||||| ||||||||||||||||||||| ||| ||||
seq2  CAACAAAAGCTGAAAGCTAGGGGCATCAGTCTCGGCCAACTCCTGAATTG  195

seq1  CCACC-TCTTCTCA-GCCAATGACGAGTGGAGCCGCAGGAGGCTGGGCGC  236
      ||||| |||| ||| |||||||||||||||||||||||||||||||||||
seq2  CCACCTTCTTTTCAGGCCAATGACGAGTGGAGCCGCAGGAGGCTGGGCGC  245

seq1  TG-TTTCTTCCCATATCTTAGCCAATCAGTGACAGAGGAGGGAATTCAGA  285
      || ||| |||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTTTCCCATATCTTAGCCAATCAGTGACAGAGGAGGGAATTCAGA  295

seq1  TGGGCTCAGAGCT-ACTGTGCTCAAACATTTTCCCGCCCCAGTCTGGTGA  334
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TGGGCTCAGAGCTAACTGTGCTCAAACATTTTCCCGCCCCAGTCTGGTGA  345

seq1  CAAGTCATTTCTTTTGA--GGCCTTAAGGCAGATAGAACAGAACCAGCTG  382
      |||||||||||||||||  | |||||||||||||||||||||||||||||
seq2  CAAGTCATTTCTTTTGAAGGCCCTTAAGGCAGATAGAACAGAACCAGCTG  395

seq1  TGCTCCTTCCAGCATGGATGGGGTATTGTCATTGTCATCCTCGTACATCT  432
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCCTTCCAGCATGGATGGGGTATTGTCATTGTCATCCTCGTACATCT  445

seq1  GTTCTAATGTCCTAGAGCTTGGGCGTGTGTGTGTGTGTGTGTGTGTGTGT  482
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTAATGTCCTAGAGCTTGGGCGTGTGTGTGTGTGTGTGTGTGTGTGT  495

seq1  GTGTGTGTGTGTGTGTGCGCGCGCGCGCGCCCAGTGTTGATTAACATCGT  532
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGCGCGCGCGCGCGCCCAGTGTTGATTAACATCGT  545

seq1  CATGTTTTTTGTAGTTATGCACATAAACATTTCCTCTGTTGCTTTACCTA  582
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTTTTTTGTAGTTATGCACATAAACATTTCCTCTGTTGCTTTACCTA  595

seq1  GCAACAGCTGGCAAACATAGCTAATCCTACAAAATTAACATTTTTACTTT  632
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACAGCTGGCAAACATAGCTAATCCTACAAAATTAACATTTTTACTTT  645

seq1  TAGTCAATTAAGTTAATAATCAAGTGCACAAACTAAGATGTTTTGTAATA  682
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCAATTAAGTTAATAATCAAGTGCACAAACTAAGATGTTTTGTAATA  695

seq1  TACAAGAGGTTTAGCAACTGCATTAGACTTTTTGCCATTGAGACAAAATA  732
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAGAGGTTTAGCAACTGCATTAGACTTTTTGCCATTGAGACAAAATA  745

seq1  CCTGACATTAACCAGCAGAATTCATGTTTTTGCCTGTGGTTTTTAGAGAT  782
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACATTAACCAGCAGAATTCATGTTTTTGCCTGTGGTTTTTAGAGAT  795

seq1  CCATCGTTTTTTGTTTTTGTTTTCGCTTTTTTTTTTGTCTCCGTTGCTTT  832
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCGTTTTTTGTTTTTGTTTTCGCTTTTTTTTTTGTCTCCGTTGCTTT  845

seq1  GGGGCGTGTGGAACAGCCCAACTCCATGGTGGCTGAGAGAATGGCCGAGG  882
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCGTGTGGAACAGCCCAACTCCATGGTGGCTGAGAGAATGGCCGAGG  895

seq1  CTGTTTAGTTCATTACAGAGACACACAGGTGGGCCCAGTAGAGGCTTACA  932
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTTAGTTCATTACAGAGACACACAGGTGGGCCCAGTAGAGGCTTACA  945

seq1  GTTCCCAAGGACACCCACAGTGGTCTACTTACAAACTCCAAAAAGGCTTC  982
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCCAAGGACACCCACAGTGGTCTACTTACAAACTCCAAAAAGGCTTC  995

seq1  CAGAAGTTTCCAAACTGGTATTTCCCAGCTGGGGAATATGCTCTCAAGTA  1032
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAAGTTTCCAAACTGGTATTTCCCAGCTGGGGAATATGCTCTCAAGTA  1045

seq1  CCTTCTCGGAGGATAGATACTTCATGTATCTTCTTGGAGGATAGATACTT  1082
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTCGGAGGATAGATACTTCATGTATCTTCTTGGAGGATAGATACTT  1095

seq1  CATGTGCAAACATAATTGTGAGCAAAACGTTAAGCCATCTTGTCTGTGAA  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGCAAACATAATTGTGAGCAAAACGTTAAGCCATCTTGTCTGTGAA  1145

seq1  CTTTACAGGACAGGCCATATTACAACCCAGGAGTTAGAATTC  1174
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTACAGGACAGGCCATATTACAACCCAGGAGTTAGAATTC  1187