BAC Information

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BAC

Clone NameB6Ng01-096P16
Chromosome3 (Build37)
Map Location 72,187,016 - 72,290,486
singlet/doubletdoublet
Overlap genenone
Upstream geneEG667377, LOC667385, LOC100041459
Downstream gene2010204N08Rik, Slitrk3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-096P16.bB6Ng01-096P16.g
ACCDH907474DH907475
length1,1061,128
definitionDH907474|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P16, 5' end.DH907475|Mus musculus domesticus DNA, BAC clone: B6Ng01-096P16, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,187,016 - 72,188,128)(72,289,465 - 72,290,486)
sequence
gaattcctatggaaaaaataccttagaaaaataagaatttattttgtcta
acagttttagagggctaagttcatgttcatttggcctcatgtgctttggc
agaataccagtgtaaaaaggatgtgtgtgaaaaatgttgctgttcaccat
atcagagaaggaaagcagagagaatccttaacaggaaagcctggacacag
tatacatacaaagcaagtcttcatttttcccagttcttttagctcataaa
ttctattcaaattttttattcagtggagaaagtcattcatgagttcatag
tacttctgatctagctgtgtctgcaaataccagtagagaagcacccagtc
ttgctctagcagtctcttgggtactcttaatcgattttacagttaataat
agtcaccgcccttgcttcaaatacttttctgttcccaaactcttttcttt
gtaggttttaaaggaatggatttctagaagcattcaaagaatcttagact
tatattcattcacttctatgaattgagcaattttagataacataattaaa
ttcaacccctccccggtatttcttcacttctattatgatattgggcctat
tgacatatctcttgcctgaaaaaaaatgcattatttgaaatgtggacatg
cctcagtgggtaagaaagaacatgaagtagaagcctttggacctgaattc
acaccctgtggatccatataagacaaataatagggctaatctataatctg
agtacctattcccccaccttccaccgtggttcagtggtttttattttatg
tttattcatctttttatttttaatttgaatgaatttttagacaatatgtt
ttattatgttttctatcatccagttcttcttatatccccccaaaatgcta
cctacaactgtattttccttttactttctttaagaaaacaacaaaaacag
ggaaacaaaacatacaaaacaaaagcaagaaacacctacaattaccgcca
taaaaataaagatcaaaacatacaaacaaaaggtaaatagttttaaaatt
gcatagcaaagcaagggagactaaatctacaaaaatactactgatttctt
tcgatt
gaattcttgccggcgagatactagctcgggcaagacacacacacacacac
acacacacacacacacacacacacacacacaattatacagacacatagct
cttaagaacaaaagtatggaatatctccaagaaaggaacaacttttgagg
tactcactgagcttgtgggaaagatatacagattggatagcagcagaaga
aagttataaataacaagtaaggcaatgtaatcagttgtaaaaagatgatg
gattattattgaaatatattgaaacatagttctgttatacttaagaatgt
attattcaagatatttgtgccttctttccttgatattaactgagataata
tcagttattatcatatttaagttttgagaatctaacataatgtccaccaa
agaacatttccatttgttattacatatataatctatttgcagttgtaaat
gggatagtaatattaggcataattgtgaactgctctattttcacctacaa
ataaatacaatgcaaggagattgtgtgtgtgtgttcctgtatgtgtgtgt
ttatgtgtgtgtgaagcttacaagggtatttgtgattgccatttttcatt
ttctttttccatcttcataattcattattttatttactttacattctgat
aacagttccctccctcctcttctcctagttccacctttacaaagtcctta
tgcttattacttctcccctttctactcagaggaggaggtgtcccttctag
gttaccaccccactctggacgtctagtgcttggcatctcacatatgggaa
ggagatccactgacagagactgagacacctgcactgtctgtaaagagcct
tggtccagcccgcacatgctccctgctttgttggtccagtccctgtgaac
ctcccaggttagttgactctgtagtctctttctttgttgtgacattcaac
cccttccagcttagctcaatttatttccctcctcttctacagactcccca
aacttgccaagatgtttggctgtggggtctctgccacctgcctccatctg
ctgcttgaatgaaacctcatggaagaccagaatatgcctattttccctgt
ctgtccagccatagaccgactattcttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_72187016_72188128
seq2: B6Ng01-096P16.b_47_1152

seq1  GAATTCCTATGGAAAAAATACCTTAGAAAAATAAGAATTTATTTTGTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTATGGAAAAAATACCTTAGAAAAATAAGAATTTATTTTGTCTA  50

seq1  ACAGTTTTAGAGGGCTAAGTTCATGTTCATTTGGCCTCATGTGCTTTGGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTTTAGAGGGCTAAGTTCATGTTCATTTGGCCTCATGTGCTTTGGC  100

seq1  AGAATACCAGTGTAAAAAGGATGTGTGTGAAAAATGTTGCTGTTCACCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATACCAGTGTAAAAAGGATGTGTGTGAAAAATGTTGCTGTTCACCAT  150

seq1  ATCAGAGAAGGAAAGCAGAGAGAATCCTTAACAGGAAAGCCTGGACACAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGAAGGAAAGCAGAGAGAATCCTTAACAGGAAAGCCTGGACACAG  200

seq1  TATACATACAAAGCAAGTCTTCATTTTTCCCAGTTCTTTTAGCTCATAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACATACAAAGCAAGTCTTCATTTTTCCCAGTTCTTTTAGCTCATAAA  250

seq1  TTCTATTCAAATTTTTTATTCAGTGGAGAAAGTCATTCATGAGTTCATAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTCAAATTTTTTATTCAGTGGAGAAAGTCATTCATGAGTTCATAG  300

seq1  TACTTCTGATCTAGCTGTGTCTGCAAATACCAGTAGAGAAGCACCCAGTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTCTGATCTAGCTGTGTCTGCAAATACCAGTAGAGAAGCACCCAGTC  350

seq1  TTGCTCTAGCAGTCTCTTGGGTACTCTTAATCGATTTTACAGTTAATAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTAGCAGTCTCTTGGGTACTCTTAATCGATTTTACAGTTAATAAT  400

seq1  AGTCACCGCCCTTGCTTCAAATACTTTTCTGTTCCCAAACTCTTTTCTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCACCGCCCTTGCTTCAAATACTTTTCTGTTCCCAAACTCTTTTCTTT  450

seq1  GTAGGTTTTAAAGGAATGGATTTCTAGAAGCATTCAAAGAATCTTAGACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTTTTAAAGGAATGGATTTCTAGAAGCATTCAAAGAATCTTAGACT  500

seq1  TATATTCATTCACTTCTATGAATTGAGCAATTTTAGATAACATAATTAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATTCATTCACTTCTATGAATTGAGCAATTTTAGATAACATAATTAAA  550

seq1  TTCAACCCCTCCCCGGTATTTCTTCACTTCTATTATGATATTGGGCCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAACCCCTCCCCGGTATTTCTTCACTTCTATTATGATATTGGGCCTAT  600

seq1  TGACATATCTCTTGCCTGAAAAAAAATGCATTATTTGAAATGTGGACATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATATCTCTTGCCTGAAAAAAAATGCATTATTTGAAATGTGGACATG  650

seq1  CCTCAGTGGGTAAGAAAGAACATGAAGTAGAAGCCTTTGGACCTGAATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTGGGTAAGAAAGAACATGAAGTAGAAGCCTTTGGACCTGAATTC  700

seq1  ACACCCTGTGGATCCATATAAGACAAATAATAGGGCTAATCTATAATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTGTGGATCCATATAAGACAAATAATAGGGCTAATCTATAATCTG  750

seq1  AGTACCTATTCCCCCACCTTCCACCGTGGTTCAGTGGTTTTTATTTTATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACCTATTCCCCCACCTTCCACCGTGGTTCAGTGGTTTTTATTTTATG  800

seq1  TTTATTCATCTTTTTATTTTTAATTTGAATGAATTTTTAGACAATATGTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCATCTTTTTATTTTTAATTTGAATGAATTTTTAGACAATATGTT  850

seq1  TTATTATGTTTTCTATCATCCAGTTCTTCTTATATCCCCCCAAAATGCTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATGTTTTCTATCATCCAGTTCTTCTTATATCCCCCCAAAATGCTA  900

seq1  CCTACAACTGTATTTTCC-TTTACTTTCTTTAAGAAAACAAACAAAAACA  949
      |||||||||||||||||| |||||||||||||||||||| ||||||||||
seq2  CCTACAACTGTATTTTCCTTTTACTTTCTTTAAGAAAAC-AACAAAAACA  949

seq1  GGGAAACAAAAACAATACAAAACAAAAGCAAGAAACACCTACAATTACCG  999
      |||||||||||   ||||||||||||||||||||||||||||||||||||
seq2  GGGAAACAAAA--CATACAAAACAAAAGCAAGAAACACCTACAATTACCG  997

seq1  CCATAAAAATAAAGATCAAAACATACAAACAAAAGGTAAATAAGTTTTAA  1049
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CCATAAAAATAAAGATCAAAACATACAAACAAAAGGTAAAT-AGTTTTAA  1046

seq1  AAATGCATAAGCAAAGCAAAGGGAGACTAAAATCTACAAAAATACTACTG  1099
      || ||||| |||||||| |||||||||| |||||||||||||||||||||
seq2  AATTGCAT-AGCAAAGC-AAGGGAGACT-AAATCTACAAAAATACTACTG  1093

seq1  AATTCCTTTCGATT  1113
       ||| |||||||||
seq2  -ATTTCTTTCGATT  1106

seq1: chr3_72289465_72290486
seq2: B6Ng01-096P16.g_155_1195 (reverse)

seq1  AAAG-ATAGTC-GTCTATGCTTG--CAGACAGGG-AAATA-GCATA-TCT  43
      |||| |||||| |||||||  ||  ||||||||| ||||| ||||| |||
seq2  AAAGAATAGTCGGTCTATGGCTGGACAGACAGGGAAAATAGGCATATTCT  50

seq1  -GTCTTCCATGAGGTTTCATTC-AGCAGCAGATGGAGGCAGGT-GCAGAG  90
       ||||||||||||||||||||| |||||||||||||||||||| ||||||
seq2  GGTCTTCCATGAGGTTTCATTCAAGCAGCAGATGGAGGCAGGTGGCAGAG  100

seq1  A-CCCACAGCCAAACATCTGGCAAAGTTTGGGGAGTCTTGTAGAAGA-GA  138
      | ||||||||||||||||| |  |||||||||||||| ||||||||| ||
seq2  ACCCCACAGCCAAACATCTTGGCAAGTTTGGGGAGTC-TGTAGAAGAGGA  149

seq1  GGGAAATAAATTGAGCT-AGCTGGA--GGGGTCAATGTCACAACAA--GA  183
      ||||||||||||||||| |||||||  ||| | |||||||||||||   |
seq2  GGGAAATAAATTGAGCTAAGCTGGAAGGGGTTGAATGTCACAACAAAGAA  199

seq1  AGAG-CTACAGAGTCAACTAACCT-GGAGGTTCACAGGGACTGGACC-AC  230
      |||| ||||||||||||||||||| |||||||||||||||||||||| ||
seq2  AGAGACTACAGAGTCAACTAACCTGGGAGGTTCACAGGGACTGGACCAAC  249

seq1  AAAGCAGGGAGCATGTGCGGGCTGGACCAAGGCTCTTTACAGACAGTGCA  280
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGGGAGCATGTGCGGGCTGGACCAAGGCTCTTTACAGACAGTGCA  299

seq1  GGTTGTCTCAGTCTCTGTCAGTGGATCTCCTTCCCATATGTGAGATGCCA  330
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GG-TGTCTCAGTCTCTGTCAGTGGATCTCCTTCCCATATGTGAGATGCCA  348

seq1  AGCACTAGACGTCCAGAGTGGGGTGGTAACCTAGAAGGGACACCTCCTCC  380
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACTAGACGTCCAGAGTGGGGTGGTAACCTAGAAGGGACACCTCCTCC  398

seq1  TCTGAGTAG-AAGGGGAGAAGTAATAAGCATAAGGACTTTGTAAAGGTGG  429
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGTAGAAAGGGGAGAAGTAATAAGCATAAGGACTTTGTAAAGGTGG  448

seq1  AACTAGGAGAAGAGGAGGGAGGGAACTGTTATCAGAATGTAAAGTAAATA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGGAGAAGAGGAGGGAGGGAACTGTTATCAGAATGTAAAGTAAATA  498

seq1  AAATAATGAATTATGAAGATGGAAAAAGAAAATGAAAAATGGCAATCACA  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGAATTATGAAGATGGAAAAAGAAAATGAAAAATGGCAATCACA  548

seq1  AATACCCTTGTAAGCTTCACACACACATAAACACACACATACAGGAACAC  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACCCTTGTAAGCTTCACACACACATAAACACACACATACAGGAACAC  598

seq1  ACACACACAATCTCCTTGCATTGTATTTATTTGTAGGTGAAAATAGAGCA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAATCTCCTTGCATTGTATTTATTTGTAGGTGAAAATAGAGCA  648

seq1  GTTCACAATTATGCCTAATATTACTATCCCATTTACAACTGCAAATAGAT  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCACAATTATGCCTAATATTACTATCCCATTTACAACTGCAAATAGAT  698

seq1  TATATATGTAATAACAAATGGAAATGTTCTTTGGTGGACATTATGTTAGA  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGTAATAACAAATGGAAATGTTCTTTGGTGGACATTATGTTAGA  748

seq1  TTCTCAAAACTTAAATATGATAATAACTGATATTATCTCAGTTAATATCA  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCAAAACTTAAATATGATAATAACTGATATTATCTCAGTTAATATCA  798

seq1  AGGAAAGAAGGCACAAATATCTTGAATAATACATTCTTAAGTATAACAGA  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAGAAGGCACAAATATCTTGAATAATACATTCTTAAGTATAACAGA  848

seq1  ACTATGTTTCAATATATTTCAATAATAATCCATCATCTTTTTACAACTGA  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATGTTTCAATATATTTCAATAATAATCCATCATCTTTTTACAACTGA  898

seq1  TTACATTGCCTTACTTGTTATTTATAACTTTCTTCTGCTGCTATCCAATC  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTGCCTTACTTGTTATTTATAACTTTCTTCTGCTGCTATCCAATC  948

seq1  TGTATATCTTTCCCACAAGCTCAGTGAGTACCTCAAAAGTTGTTCCTTTC  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATCTTTCCCACAAGCTCAGTGAGTACCTCAAAAGTTGTTCCTTTC  998

seq1  TTGGAGATATTCCATACTTTTGTTCTTAAGAGCTATGTGTCTG  1022
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGATATTCCATACTTTTGTTCTTAAGAGCTATGTGTCTG  1041