BAC Information

Click to search

BAC

Clone NameB6Ng01-097C08
Chromosome3 (Build37)
Map Location 39,490,064 - 39,673,163
singlet/doubletdoublet
Overlap geneLOC100041443
Upstream geneLOC100040824, Fat4, LOC100041432, LOC100040853
Downstream geneLOC100041458, LOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097C08.bB6Ng01-097C08.g
ACCDH907595DH907596
length9131,104
definitionDH907595|Mus musculus domesticus DNA, BAC clone: B6Ng01-097C08, 5' end.DH907596|Mus musculus domesticus DNA, BAC clone: B6Ng01-097C08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(39,672,250 - 39,673,163)(39,490,064 - 39,491,170)
sequence
gaattctcattccagagttcaggagaatcttgttcaggctaatgtagaaa
aaaaattactatttaagaagatttcatgtgattatcaccctatttactat
tttgtcttaaatctttctacttattttagcatagaagagaggaaaattca
caatttatttggttcatttattttaagcctagttgtgaaatgctatcttc
cttttatggatgtttaataacagatatgcatctcagttctttaaaatttg
aattatgcataaccatttccttgtggtagaatcttagggcaggtatttaa
aaggaaaatatatcttaccgagaggctcagtctctgatcagattctgagt
caagagttggcatttgaattaaatccatgtgtgcctgcagttatctctgt
aatctttgccatgtgacacttcacattttatttggtgacttctgttaaag
aatgctctgctactatccaaatagcaaatcaaatctaacattaacaaata
cctcagttctaaggtgaagcagtttgatttacatttccttagcgttcgca
gcttggtctgtgacatgttggtagctgtggtcatcgattttccatttgtc
tcatagaaacttgagaagagctagcagagtataagaaacactccaactga
aaatagctgtcagagcctttgacgggagtgtgattcgagtgcagacagca
ttgcttctgaggtgcttgctgtggataatgtcactcagggttttcacagc
acatggtgccccagcacattcagggaagaaggaaaaaaaaaaaacaagtc
ttatatagcaaaacaaggagaaaaataagcatgcctggtcaaacttatca
gattacacacagagagaattagagggagtatttgggaagatgagggtgat
caatgggagtgga
gaattctatagcctataattttattcagttttattattcccttgtgacca
tatgatcctgacaccatttagtaagtttataaagcttactaaagaagaaa
ccaggggaagaagaaaaatgacaagattgtacttattccgttgtaccaga
agctgaaggaatccacacaatatcctagattaatgaatgggctcccagca
caaatgcttttgattcctggagaaagtctaagtggggatctggaagccct
tgatctcatgtaatttagatgacataggaaaagtagaaagtttcctgaat
agaatcataaaagaatccagacttgacgatggaatttccaaatttgtttc
tccagcagagaccagctggcagagagtaccgccaaatctgagaactaaat
gatgcactaactgtctgtgtgtgcactgagatgaccattcaggctccaaa
atagaaagaggagatgctgggcaggccccagaaggaatacctgtgaagga
atgctttcccttcactgccaccaaattctcctaagtataagctttacatg
gaaagtttaaagtctagatattcgcattttaaaatatgagaattattttt
aagatttaattttttaaaaaatgtatgcacaactgtgtgagcatatgtgt
gtgattttatgcatgtgaatgcaggtgtctttgacgtcctagagaggata
tcatgttctctggagcatggaacactggaggtattgaaccacctgacaag
ggtgctgggaattgaactctggttctctgcaaaagtggtacacactcttg
aacccaagccatctctcttgacaattgtttttagcaaatgtatatgaatc
ccaagcaaaacactgcccagacatatcatatttaaaataaaatgagagga
aaaaaaaaaacagctagagatccatatgtctacagacatcgacaaataga
tctgtcctccagagaaacagttctgtaatctacaccaagacgtgaatagt
gtgttaccagacactaattggaaaagcctgaaacatgaagccaccttggt
tgacactggaacaatgggccttaagttctctcattgctgactgcccatct
tcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_39672250_39673163
seq2: B6Ng01-097C08.b_49_961 (reverse)

seq1  TCCACTCCCATTGATCACCCTCATCTTCCCAAAATACTCCCTCTAATTCT  50
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TCCACTCCCATTGATCACCCTCATCTTCCC-AAATACTCCCTCTAATTCT  49

seq1  CTCTGTGTGTAATCTGATAAGTTTGACCAGGCATGCTTATTTTTCTCCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTGTAATCTGATAAGTTTGACCAGGCATGCTTATTTTTCTCCTT  99

seq1  GTTTTGCTATATAAGACTTGTTTTTTTTTTTTCCTTCTTCCCTGAATGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGCTATATAAGACTTGTTTTTTTTTTTTCCTTCTTCCCTGAATGTG  149

seq1  CTGGGGCACCATGTGCTGTGAAAACCCTGAGTGACATTATCCACAGCAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGCACCATGTGCTGTGAAAACCCTGAGTGACATTATCCACAGCAAG  199

seq1  CACCTCAGAAGCAATGCTGTCTGCACTCGAATCACACTCCCGTCAAAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAGAAGCAATGCTGTCTGCACTCGAATCACACTCCCGTCAAAGGC  249

seq1  TCTGACAGCTATTTTCAGTTGGAGTGTTTCTTATACTCTGCTAGCTCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACAGCTATTTTCAGTTGGAGTGTTTCTTATACTCTGCTAGCTCTTC  299

seq1  TCAAGTTTCTATGAGACAAATGGAAAATCGATGACCACAGCTACCAACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGTTTCTATGAGACAAATGGAAAATCGATGACCACAGCTACCAACAT  349

seq1  GTCACAGACCAAGCTGCGAACGCTAAGGAAATGTAAATCAAACTGCTTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGACCAAGCTGCGAACGCTAAGGAAATGTAAATCAAACTGCTTCA  399

seq1  CCTTAGAACTGAGGTATTTGTTAATGTTAGATTTGATTTGCTATTTGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGAACTGAGGTATTTGTTAATGTTAGATTTGATTTGCTATTTGGAT  449

seq1  AGTAGCAGAGCATTCTTTAACAGAAGTCACCAAATAAAATGTGAAGTGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCAGAGCATTCTTTAACAGAAGTCACCAAATAAAATGTGAAGTGTC  499

seq1  ACATGGCAAAGATTACAGAGATAACTGCAGGCACACATGGATTTAATTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATGGCAAAGATTACAGAGATAACTGCAGGCACACATGGATTTAATTCA  549

seq1  AATGCCAACTCTTGACTCAGAATCTGATCAGAGACTGAGCCTCTCGGTAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCAACTCTTGACTCAGAATCTGATCAGAGACTGAGCCTCTCGGTAA  599

seq1  GATATATTTTCCTTTTAAATACCTGCCCTAAGATTCTACCACAAGGAAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATATTTTCCTTTTAAATACCTGCCCTAAGATTCTACCACAAGGAAAT  649

seq1  GGTTATGCATAATTCAAATTTTAAAGAACTGAGATGCATATCTGTTATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTATGCATAATTCAAATTTTAAAGAACTGAGATGCATATCTGTTATTA  699

seq1  AACATCCATAAAAGGAAGATAGCATTTCACAACTAGGCTTAAAATAAATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCATAAAAGGAAGATAGCATTTCACAACTAGGCTTAAAATAAATG  749

seq1  AACCAAATAAATTGTGAATTTTCCTCTCTTCTATGCTAAAATAAGTAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAATAAATTGTGAATTTTCCTCTCTTCTATGCTAAAATAAGTAGAA  799

seq1  AGATTTAAGACAAAATAGTAAATAGGGTGATAATCACATGAAATCTTCTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTTAAGACAAAATAGTAAATAGGGTGATAATCACATGAAATCTTCTT  849

seq1  AAATAGTAATTTTTTTTCTACATTAGCCTGAACAAGATTCTCCTGAACTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAGTAATTTTTTTTCTACATTAGCCTGAACAAGATTCTCCTGAACTC  899

seq1  TGGAATGAGAATTC  914
      ||||||||||||||
seq2  TGGAATGAGAATTC  913

seq1: chr3_39490064_39491170
seq2: B6Ng01-097C08.g_67_1170

seq1  GAATTCTATAGCCTATAATTTTATTCAGTTTTATTATTCCCTTGTGACCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTATAGCCTATAATTTTATTCAGTTTTATTATTCCCTTGTGACCA  50

seq1  TATGATCCTGACACCATTTAGTAAGTTTATAAAGCTTACTAAAGAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGATCCTGACACCATTTAGTAAGTTTATAAAGCTTACTAAAGAAGAAA  100

seq1  CCAGGGGAAGAAGAAAAATGACAAGATTGTACTTATTCCGTTGTACCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGGAAGAAGAAAAATGACAAGATTGTACTTATTCCGTTGTACCAGA  150

seq1  AGCTGAAGGAATCCACACAATATCCTAGATTAATGAATGGGCTCCCAGCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGAAGGAATCCACACAATATCCTAGATTAATGAATGGGCTCCCAGCA  200

seq1  CAAATGCTTTTGATTCCTGGAGAAAGTCTAAGTGGGGATCTGGAAGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCTTTTGATTCCTGGAGAAAGTCTAAGTGGGGATCTGGAAGCCCT  250

seq1  TGATCTCATGTAATTTAGATGACATAGGAAAAGTAGAAAGTTTCCTGAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATCTCATGTAATTTAGATGACATAGGAAAAGTAGAAAGTTTCCTGAAT  300

seq1  AGAATCATAAAAGAATCCAGACTTGACGATGGAATTTCCAAATTTGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCATAAAAGAATCCAGACTTGACGATGGAATTTCCAAATTTGTTTC  350

seq1  TCCAGCAGAGACCAGCTGGCAGAGAGTACCGCCAAATCTGAGAACTAAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGCAGAGACCAGCTGGCAGAGAGTACCGCCAAATCTGAGAACTAAAT  400

seq1  GATGCACTAACTGTCTGTGTGTGCACTGAGATGACCATTCAGGCTCCAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCACTAACTGTCTGTGTGTGCACTGAGATGACCATTCAGGCTCCAAA  450

seq1  ATAGAAAGAGGAGATGCTGGGCAGGCCCCAGAAGGAATACCTGTGAAGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAGAGGAGATGCTGGGCAGGCCCCAGAAGGAATACCTGTGAAGGA  500

seq1  ATGCTTTCCCTTCACTGCCACCAAATTCTCCTAAGTATAAGCTTTACATG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTCCCTTCACTGCCACCAAATTCTCCTAAGTATAAGCTTTACATG  550

seq1  GAAAGTTTAAAGTCTAGATATTCGCATTTTAAAATATGAGAATTATTTTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTAAAGTCTAGATATTCGCATTTTAAAATATGAGAATTATTTTT  600

seq1  AAGATTTAATTTTTTAAAAAATGTATGCACAACTGTGTGAGCATATGTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTAATTTTTTAAAAAATGTATGCACAACTGTGTGAGCATATGTGT  650

seq1  GTGATTTTATGCATGTGAATGCAGGTGTCTTTGACGTCCTAGAGAGGATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATTTTATGCATGTGAATGCAGGTGTCTTTGACGTCCTAGAGAGGATA  700

seq1  TCATGTTCTCTGGAGCATGGAACACTGGAGGTATTGAACCACCTGACAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGTTCTCTGGAGCATGGAACACTGGAGGTATTGAACCACCTGACAAG  750

seq1  GGTGCTGGGAATTGAACTCTGGTTCTCTGCAAAAGTGGTACACACTCTTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCTGGGAATTGAACTCTGGTTCTCTGCAAAAGTGGTACACACTCTTG  800

seq1  AACCCAAGCCATCTCTCTTGACAATTGTTTTTAGCAAATGTATATGAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAAGCCATCTCTCTTGACAATTGTTTTTAGCAAATGTATATGAATC  850

seq1  CCAAGCAAAACACTGCCCAGACATATCATATTTAAAAATAAAATGAGAGG  900
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CCAAGCAAAACACTGCCCAGACATATCATATTT-AAAATAAAATGAGAGG  899

seq1  AAAAAAAAAAAACAGCTAGAGATCCATATGTCTACAGACATCGACAAATA  950
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAAAAAAAAAACAGCTAGAGATCCATATGTCTACAGACATCGACAAATA  948

seq1  GATCTGTCCTCCAGAGGAAACAGTTCTGT-ATCTACAACCAAGACGTGAT  999
      ||||||||||||||| ||||||||||||| |||||| |||||||||||| 
seq2  GATCTGTCCTCCAGA-GAAACAGTTCTGTAATCTAC-ACCAAGACGTGAA  996

seq1  AAGTTGTGGTACCAGACACTAATTGGAAAGGCCTGAAACATGAAGCCACC  1049
       || |||| |||||||||||||||||||| ||||||||||||||||||||
seq2  TAG-TGTGTTACCAGACACTAATTGGAAAAGCCTGAAACATGAAGCCACC  1045

seq1  TGTGTTGACACTGG-ACACATGGCCTTAAGTTCTCTCATTGCTGACTGCC  1098
      |  ||||||||||| |||   |||||||||||||||||||||||||||||
seq2  TTGGTTGACACTGGAACAATGGGCCTTAAGTTCTCTCATTGCTGACTGCC  1095

seq1  CATCTTCAT  1107
      |||||||||
seq2  CATCTTCAT  1104