BAC Information

Click to search

BAC

Clone NameB6Ng01-097G01
Chromosome3 (Build37)5 (Build37)
Map Location 79,442,621 - 79,443,13061,520,903 - 61,521,833
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC383883, LOC100041748, LOC100041716, LOC100041725, LOC100041766, Rapgef2, LOC100041741, LOC100041793, LOC667613, Ppid, Etfdh, 4930579G24Rik
Downstream geneRxfp1, Tmem144, 1110032E23Rik, EG626797
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097G01.bB6Ng01-097G01.g
ACCDH907769DH907770
length837933
definitionDH907769|Mus musculus domesticus DNA, BAC clone: B6Ng01-097G01, 5' end.DH907770|Mus musculus domesticus DNA, BAC clone: B6Ng01-097G01, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(79,442,621 - 79,443,130)(61,520,903 - 61,521,833)
sequence
gaattctttgttcagttctgagccccattttttaagggggttatttgatt
ttctgaggtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccagtctgttggtggtct
ttttgtcttatagacagtatcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttccttga
tccacttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaatcagttgtgccagcaccaattgttgaaaat
gctgtctttcttccactggatggttttggctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tccacttgtctgtctctataccagtaccatgcagtttttatcacaattgc
tctgtagtaaagctttaggtcaggcatggtgattccaccagaggttcttt
tatccttgagaagagtttttgctatcctcggttttttgttattccagatg
aatttgcaaattgctccttctaattcgtttgaagaattgagttggaattt
ttaatggggattgcattgaatctgtagattgcttttggcaagaatagcca
ttttttaccaatgttggtccctgccaatccatgagca
gaattctctgcaagaatattgagggttgcttatgtatcataccatccaca
aatagtgatactttgacttcttcctgaaacttttacttttatgctctttc
aaaatatctttcagctttcttacaataatcaacttaatttaaaaccttaa
atagtcttccaaaaatcattataaatattgtgatttcctggtcaataaga
ggtatgtgtcaataaatatactttatagtatatatgtattctgtattaaa
tactgtaccatgtgcttttttatgtaaaaaaagctttattaaagtttttc
atcatccagtaggttttatttatataaatttacattttttggtaagacat
ggcttctgtatgttaatacatattttttcttatttttataattatgtatg
caatctttttttcttaatgtgatacatatgtgcatacaaattcagataca
tgtttacatgtataagtaatttataaatgtataaatgctagaagaaaata
aaataaaggcccaatagcaaccaatatatttatatacaaacgtttattat
gctttttaaaaatagttatgcttaaacaaatatacctcaggagcatatgt
actttctgactgtaggacagtcatttaaaaggtcaaaaggaaaaagcaac
tttcattctgagccctcctcaaaaccttcccaccacctattacttgtctc
acaatcaatataccttcagagggcagaaattattcttcttgataaatgat
tagtattttctcatggtcaaaaaagattcatggtagaaagtacccaagga
gctgaagaaggttgccagcccataggaggaacaacagtatgatctaacca
gtacccccagatcttcttggggactaaccctcaatcaaaggaaaacacat
ggtggggagtgtgcctctagcttcctagtagca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_79442621_79443130
seq2: B6Ng01-097G01.b_368_883 (reverse)

seq1  TGCTCATGGATTGGCA-GGACCAACATTG--TAAAAATGGCTA-TCTTGC  46
      |||||||||||||||| ||||||||||||   ||||||||||| ||||||
seq2  TGCTCATGGATTGGCAGGGACCAACATTGGTAAAAAATGGCTATTCTTGC  50

seq1  CAAAAGCAATCTACAGATTCAATGCAATCCCCATT-AAAATTCCAACTCA  95
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  CAAAAGCAATCTACAGATTCAATGCAATCCCCATTAAAAATTCCAACTCA  100

seq1  ATTCTTC-AACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAAC  144
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTCAAACGAATTAGAAGGAGCAATTTGCAAATTCATCTGGAATAAC  150

seq1  AAAAAACCGAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGG  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACCGAGGATAGCAAAAACTCTTCTCAAGGATAAAAGAACCTCTGG  200

seq1  TGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCACCATGCCTGACCTAAAGCTTTACTACAGAGCAATTGTGATAA  250

seq1  AAACTGCATGGTACTGGTATAGAGACAGACAAGTGGACCAATGGAATAGA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTGCATGGTACTGGTATAGAGACAGACAAGTGGACCAATGGAATAGA  300

seq1  ATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAAGACCCAGAAATGAACCCACACACCTATGGTCACTTGATCTTCGA  350

seq1  CAAGGGAGCCAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGGAGCCAAAACCATCCAGTGGAAGAAAGACAGCATTTTCAACAATT  400

seq1  GGTGCTGGCTCAACTGGTTGTTATCATGTAGAAGAATGCAAATCGATCCA  444
      ||||||||| |||||| |||||||||||||||||||||| ||||||||||
seq2  GGTGCTGGCACAACTGATTGTTATCATGTAGAAGAATGCGAATCGATCCA  450

seq1  TACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTATCTCCTTGTACTAAGGTCAAATCTAAGTGGATCAAGGAACTTCA  500

seq1  CATAAAACCAGAGACA  510
      ||||||||||||||||
seq2  CATAAAACCAGAGACA  516

seq1: chr5_61520903_61521833
seq2: B6Ng01-097G01.g_67_999

seq1  GAATTCTCTGCAAGAATATTGAGGGTTGCTTATGTATCATACCATCCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTGCAAGAATATTGAGGGTTGCTTATGTATCATACCATCCACA  50

seq1  AATAGTGATACTTTGACTTCTTCCTGAAACTTTTACTTTTATGCTCTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGTGATACTTTGACTTCTTCCTGAAACTTTTACTTTTATGCTCTTTC  100

seq1  AAAATATCTTTCAGCTTTCTTACAATAATCAACTTAATTTAAAACCTTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATATCTTTCAGCTTTCTTACAATAATCAACTTAATTTAAAACCTTAA  150

seq1  ATAGTCTTCCAAAAATCATTATAAATATTGTGATTTCCTGGTCAATAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTCCAAAAATCATTATAAATATTGTGATTTCCTGGTCAATAAGA  200

seq1  GGTATGTGTCAATAAATATACTTTATAGTATATATGTATTCTGTATTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTATGTGTCAATAAATATACTTTATAGTATATATGTATTCTGTATTAAA  250

seq1  TACTGTACCATGTGCTTTTTTATGTAAAAAAAGCTTTATTAAAGTTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGTACCATGTGCTTTTTTATGTAAAAAAAGCTTTATTAAAGTTTTTC  300

seq1  ATCATCCAGTAGGTTTTATTTATATAAATTTACATTTTTTGGTAAGACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCCAGTAGGTTTTATTTATATAAATTTACATTTTTTGGTAAGACAT  350

seq1  GGCTTCTGTATGTTAATACATATTTTTTCTTATTTTTATAATTATGTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCTGTATGTTAATACATATTTTTTCTTATTTTTATAATTATGTATG  400

seq1  CAATCTTTTTTTCTTAATGTGATACATATGTGCATACAAATTCAGATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCTTTTTTTCTTAATGTGATACATATGTGCATACAAATTCAGATACA  450

seq1  TGTTTACATGTATAAGTAATTTATAAATGTATAAATGCTAGAAGAAAATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTACATGTATAAGTAATTTATAAATGTATAAATGCTAGAAGAAAATA  500

seq1  AAATAAAGGCCCAATAGCAACCAATATATTTATATACAAACGTTTATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAAAGGCCCAATAGCAACCAATATATTTATATACAAACGTTTATTAT  550

seq1  GCTTTTTAAAAATAGTTATGCTTAAACAAATATACCTCAGGAGCATATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTAAAAATAGTTATGCTTAAACAAATATACCTCAGGAGCATATGT  600

seq1  ACTTTCTGACTGTAGGACAGTCATTTAAAAGGTCAAAAGGAAAAAGCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTGACTGTAGGACAGTCATTTAAAAGGTCAAAAGGAAAAAGCAAC  650

seq1  -TTCATTCTGAGCCCTCCTCAAAACCTTCCCACCACCTATTACTTGTCTC  699
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATTCTGAGCCCTCCTCAAAACCTTCCCACCACCTATTACTTGTCTC  700

seq1  ACAATCAATATACCTTCAGAGGGCAGAAATTATTCTTCTTGATAAATGAT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATCAATATACCTTCAGAGGGCAGAAATTATTCTTCTTGATAAATGAT  750

seq1  TAGTATTTTCTCATGGTC-AAAAAGATTCATGGTAGAAAGTACCCAAGGA  798
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TAGTATTTTCTCATGGTCAAAAAAGATTCATGGTAGAAAGTACCCAAGGA  800

seq1  GCTGAAGAGGTTTGCAGCCCCATAGGAGGAACAACAGTATGAACTAACCA  848
      |||||||| | ||||   |||||||||||||||||||||||| |||||||
seq2  GCTGAAGAAGGTTGCCAGCCCATAGGAGGAACAACAGTATGATCTAACCA  850

seq1  GTACCCCCAGAGC-TCCTGGGGACTAACCCACCAATCAAA-GAAAACACA  896
      ||||||||||| | || |||||||||||||  |||||||| |||||||||
seq2  GTACCCCCAGATCTTCTTGGGGACTAACCC-TCAATCAAAGGAAAACACA  899

seq1  TGGTGGGATGTGTGCCTCTAGCTTCATATGTAGCA  931
      |||||||  |||||||||||||||| || ||||||
seq2  TGGTGGGGAGTGTGCCTCTAGCTTCCTA-GTAGCA  933