BAC Information

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BAC

Clone NameB6Ng01-097H08
Chromosome3 (Build37)
Map Location 123,387,023 - 123,513,760
singlet/doubletdoublet
Overlap genenone
Upstream genePde5a, LOC668792, Fabp2, 1810037I17Rik, Usp53, Myoz2, Synpo2, Sec24d, G430022H21Rik, Prss12, EG668804, Ndst3
Downstream geneLOC100043333, EG668809, Tram1l1, LOC100043740, 1700006A11Rik, 1700003H04Rik, LOC668817
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097H08.bB6Ng01-097H08.g
ACCDH907831DH907832
length2641,113
definitionDH907831|Mus musculus domesticus DNA, BAC clone: B6Ng01-097H08, 5' end.DH907832|Mus musculus domesticus DNA, BAC clone: B6Ng01-097H08, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(123,387,023 - 123,387,286)(123,512,635 - 123,513,760)
sequence
tctgaatcttgtcttctctgagagtgactctctgaagtcttgaatattta
tatactcttggatggggggtcctagtgaatctggttaatttcagggtctt
cctgaaagaaattagtgttgtttacttcttatcttaagggtcatctctcc
ccttataacttggtgccttttcacttccccataagcacacactcttaaga
agtttccctttaaagccccagtgtagggaaatgcaggcacgggaaggtgg
gagtgggtgggtgg
gaattcccataccacagggtagcattaggcaatgaaatgacttagcgttg
aggggagagaaccatcatgtctttgtggtgcaggatgcaactccaagttt
tacagcaggttacagtgttgacttgaccacaggactacgggatgtaaatg
taagagaagaatctgtaacacaccaaaggagaaagacaaaaatcttattt
ttccaacatgatttacatggggctggccatagtccctgaaccttacaatg
ctaaagcgagttgactccaaactagctgaaaacacagaagaaattgatcg
tggcagggataaatgcctttactcttttttttatttttaagcaaagaccg
actgtcaaatagatttcattcttaggctcccattattgaaaaagctaaac
caagctcaccccctagcctgaactcccctctcctctggcttcatgccctt
ccctttgcaaggttacattttgcatactgtttgcataaggtttgctcctt
agcatgcaaagggtcatcactcaatgttgaaccaagtcctgaataggaaa
ggcaaaggcaggcatgagggaggatttgtagctagttatgcaattgtgta
gggttttctttttggcccccagagtgagagctgtcatttgcataagcagt
ggctagactcccattggagcaaaaggagacatgtcttttcattacattct
gtgagctaatcatgacagaaaaacctatgtattgtgcgggtggatttgaa
taatctttccgaacgaagtgtgcggaattactaaacaatccatttgactt
ttcttctgaccagcaacatagtcgccctattctttaaaccactgagctat
ttcaaattaatatacttttagttttagttgtttagaacacagttcatatc
taataacaggagatcaatggttctatagctttcagaaacatacctggggc
taaatatgaaaagtagtgataagcatttaacacccactgggcagtggtca
aatcatcctgtctaatggagtaggctaggattgcactataggcaaccaga
tctttgcaaaacagggacatcatgtcgtgcttctccgagtcttcgagtct
tccggagacaaac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_123387023_123387286
seq2: B6Ng01-097H08.b_52_315

seq1  TCTGAATCTTGTCTTCTCTGAGAGTGACTCTCTGAAGTCTTGAATATTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATCTTGTCTTCTCTGAGAGTGACTCTCTGAAGTCTTGAATATTTA  50

seq1  TATACTCTTGGATGGGGGGTCCTAGTGAATCTGGTTAATTTCAGGGTCTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTCTTGGATGGGGGGTCCTAGTGAATCTGGTTAATTTCAGGGTCTT  100

seq1  CCTGAAAGAAATTAGTGTTGTTTACTTCTTATCTTAAGGGTCATCTCTCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAAAGAAATTAGTGTTGTTTACTTCTTATCTTAAGGGTCATCTCTCC  150

seq1  CCTTATAACTTGGTGCCTTTTCACTTCCCCATAAGCACACACTCTTAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTATAACTTGGTGCCTTTTCACTTCCCCATAAGCACACACTCTTAAGA  200

seq1  AGTTTCCCTTTAAAGCCCCAGTGTAGGGAAATGCAGGCACGGGAAGGTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCCCTTTAAAGCCCCAGTGTAGGGAAATGCAGGCACGGGAAGGTGG  250

seq1  GAGTGGGTGGGTGG  264
      ||||||||||||||
seq2  GAGTGGGTGGGTGG  264

seq1: chr3_123512635_123513760
seq2: B6Ng01-097H08.g_69_1181 (reverse)

seq1  GTTTG-CTCCCGAAGAACTCGAAGAACTCGGAAGAAGCAACCGACATGAT  49
      ||||| |||| |||| |||||||| |||||| |||||||  |||||||||
seq2  GTTTGTCTCCGGAAG-ACTCGAAG-ACTCGG-AGAAGCA--CGACATGAT  45

seq1  GGTCCCTTGTTTTGCAAAGACTCTTGGTTTGCCTATAGTGCAATCCTAGC  99
       ||||| ||||||||||||| |||  | ||||||||||||||||||||||
seq2  -GTCCC-TGTTTTGCAAAGA-TCT--GGTTGCCTATAGTGCAATCCTAGC  90

seq1  CTACTCCATTAAGACAGGATGATTTTGACCACTGCCCAGTGGGTGTTAAA  149
      |||||||||| ||||||||||| |||||||||||||||||||||||||||
seq2  CTACTCCATT-AGACAGGATGA-TTTGACCACTGCCCAGTGGGTGTTAAA  138

seq1  TGCTTATCACTACTTTTCATATTTAGCCCCAGGTATGTTTCCTGAAAGCT  199
      |||||||||||||||||||||||||||||||||||||||| |||||||||
seq2  TGCTTATCACTACTTTTCATATTTAGCCCCAGGTATGTTT-CTGAAAGCT  187

seq1  ATAGAACCATTTGATCTCCTGTTATTAGATATGAACTGTGTTCTAAACAA  249
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACCA-TTGATCTCCTGTTATTAGATATGAACTGTGTTCTAAACAA  236

seq1  CTAAAACTAAAAGTATATTAATTTGAAATAGCTCAGTGGTTTAAAGAATA  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAACTAAAAGTATATTAATTTGAAATAGCTCAGTGGTTTAAAGAATA  286

seq1  GGGCGACTATGTTGCTGGTCAGAAGAAAAGTCAAATGGATTGTTTAGTAA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCGACTATGTTGCTGGTCAGAAGAAAAGTCAAATGGATTGTTTAGTAA  336

seq1  TTCCGCACACTTCGTTCGGAAAGATTATTCAAATCCACCCGCACAATACA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGCACACTTCGTTCGGAAAGATTATTCAAATCCACCCGCACAATACA  386

seq1  TAGGTTTTTCTGTCATGATTAGCTCACAGAATGTAATGAAAAGACATGTC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTTCTGTCATGATTAGCTCACAGAATGTAATGAAAAGACATGTC  436

seq1  TCCTTTTGCTCCAATGGGAGTCTAGCCACTGCTTATGCAAATGACAGCTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTTTGCTCCAATGGGAGTCTAGCCACTGCTTATGCAAATGACAGCTC  486

seq1  TCACTCTGGGGGCCAAAAAGAAAACCCTACACAATTGCATAACTAGCTAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACTCTGGGGGCCAAAAAGAAAACCCTACACAATTGCATAACTAGCTAC  536

seq1  AAATCCTCCCTCATGCCTGCCTTTGCCTTTCCTATTCAGGACTTGGTTCA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTCCCTCATGCCTGCCTTTGCCTTTCCTATTCAGGACTTGGTTCA  586

seq1  ACATTGAGTGATGACCCTTTGCATGCTAAGGAGCAAACCTTATGCAAACA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGAGTGATGACCCTTTGCATGCTAAGGAGCAAACCTTATGCAAACA  636

seq1  GTATGCAAAATGTAACCTTGCAAAGGGAAGGGCATGAAGCCAGAGGAGAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCAAAATGTAACCTTGCAAAGGGAAGGGCATGAAGCCAGAGGAGAG  686

seq1  GGGAGTTCAGGCTAGGGGGTGAGCTTGGTTTAGCTTTTTCAATAATGGGA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTTCAGGCTAGGGGGTGAGCTTGGTTTAGCTTTTTCAATAATGGGA  736

seq1  GCCTAAGAATGAAATCTATTTGACAGTCGGTCTTTGCTTAAAAATAAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTAAGAATGAAATCTATTTGACAGTCGGTCTTTGCTTAAAAATAAAAA  786

seq1  AAAGAGTAAAGGCATTTATCCCTGCCACGATCAATTTCTTCTGTGTTTTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGTAAAGGCATTTATCCCTGCCACGATCAATTTCTTCTGTGTTTTC  836

seq1  AGCTAGTTTGGAGTCAACTCGCTTTAGCATTGTAAGGTTCAGGGACTATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTAGTTTGGAGTCAACTCGCTTTAGCATTGTAAGGTTCAGGGACTATG  886

seq1  GCCAGCCCCATGTAAATCATGTTGGAAAAATAAGATTTTTGTCTTTCTCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGCCCCATGTAAATCATGTTGGAAAAATAAGATTTTTGTCTTTCTCC  936

seq1  TTTGGTGTGTTACAGATTCTTCTCTTACATTTACATCCCGTAGTCCTGTG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGTGTGTTACAGATTCTTCTCTTACATTTACATCCCGTAGTCCTGTG  986

seq1  GTCAAGTCAACACTGTAACCTGCTGTAAAACTTGGAGTTGCATCCTGCAC  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAAGTCAACACTGTAACCTGCTGTAAAACTTGGAGTTGCATCCTGCAC  1036

seq1  CACAAAGACATGATGGTTCTCTCCCCTCAACGCTAAGTCATTTCATTGCC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAGACATGATGGTTCTCTCCCCTCAACGCTAAGTCATTTCATTGCC  1086

seq1  TAATGCTACCCTGTGGTATGGGAATTC  1126
      |||||||||||||||||||||||||||
seq2  TAATGCTACCCTGTGGTATGGGAATTC  1113