BAC Information

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BAC

Clone NameB6Ng01-097K07
Chromosome3 (Build37)
Map Location 38,041,726 - 38,195,447
singlet/doubletdoublet
Overlap geneLOC100041366, LOC100040785
Upstream geneIl21, Cetn4, Bbs12, LOC100041328, Fgf2, LOC100040649, Nudt6, Spata5, LOC665778, Spry1, EG381438, LOC100038875, LOC100041338, EG626367, 4930556A17Rik, LOC665811, EG665821
Downstream geneLOC665838, Ankrd50, LOC100041378, LOC665855, LOC100040824, Fat4, LOC100041432
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097K07.bB6Ng01-097K07.g
ACCDH907957DH907958
length1,2321,121
definitionDH907957|Mus musculus domesticus DNA, BAC clone: B6Ng01-097K07, 5' end.DH907958|Mus musculus domesticus DNA, BAC clone: B6Ng01-097K07, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,194,190 - 38,195,447)(38,041,726 - 38,042,862)
sequence
gaattctcaaaactgagactggtaggagggatactagctcactccctgtt
tccatgtctgccttggagcatatgacctggagacctttaaccaggtggtc
acagaatagcccatgcattgaggcatctcagtagccttagcctttagtca
atgataattttcctccctggatactcttaccttcctccccaaaatgatat
aacccttggttcaccctgaataaagtatgtacattcaataccccctaata
aagatatatgaacaagctaagatcgtttcagagaactgcttcattaaagc
cataagactatgatccttggagaagccttcatcatcctgcacttgccccc
agtaggaccagaatccagttccagactctgcttaatctttccagtcccgt
gagcaatggtggcttctaaacactgtgaaggggagaaagcagcagggatc
cagtttaacccctcctggtctcgtgtgcaatatctgacatcctgaacgaa
aagacagactgaggactccacccattccatatttcaccctgtcctctcca
agcccttgcaccagaagtatcctgagagaagaggtggaaccaagaacctc
agctggcaccccgaatatagggctcatccagctgatgcataccacaccta
tcaagtacatcacccaagctcagtactgctccagataagcttaggggact
taagcttatcatctctgacctcctaaggaagcaaacaaacaaacaaacaa
aaaaaaacctacttctccctttaaaagcctaatacttagagttaaaaggc
ccaaaggggactactaactggttcaggatctccagattgtccattttgca
atggtcccctcttacacactccttcccactctcgtgggagactgctcagg
gatctcccatttctcagtcctgaatctcgaggatgctttctctaatttcc
tggatacccagccataaaacatctttactttcacctagactgatgctggc
acctacctctctactcaattcacctggactgcccctttcccaggtctgga
gagcccacacctatttggccgaaccctgactatatcaccccttgtctctc
ctcgtctacatatacttaatgaggacctccctctgcagccggtcttcaag
taacaactgaacccttctgcctctctgatgttgtcatgcaggcacagaat
ctatgcaagtccaccgtcactcctcaggcaac
gaattccattttactaggatgtgtgggttttaattttgaggcttcgttgc
agttatgtgctgtgtgacctattagaatttcaacagagaattctaattgg
actccacactaagatgattccctatcaggctaatccatactttctttctt
tctttcaacccctggggaatcactaggctgttttagtccatgaacctctg
tgtccaaatgaaaacaaacaaagtaaccaaccaaggaagaaacactggga
ttgtttgttccctccgttctttcttcttagtttctcttgttttactcatg
ttcgatacactgtatagactgatgttctaggaagaaaaataattcccttt
ggctttttctttttaagtcttggataagacacagccaggatgagccagaa
agggtgaccctggcatagactctgcagttcccctttgcagaccaagccaa
actccagacactgaaatggggctggcatcaggccaaaggaaatctagtct
gtacatgctaagtagccaaccgtttccgtttccatagtgtcactggcaag
gaagctggctgctggtgcacccaccccagcagagaaaggaggagtgctct
actgtcccctcgctgctgctcagtgccaaggtggtgttcagtcatggagt
ctgcagagaagctgccattccagccagcagccatgtagcccttcctgctt
cctatgggaactaaggccccagggagtcaggagcagggctgcgagacagc
cagccgcttcttttcattcttacacacctttcctctgctgggagactcgc
tggaggggaacgcgattctgttttcagccatttatgcatggtgaccccgt
cagctgtctggtcctgtattcatgtggcctttcttgttcttgctccacat
cctttcccagagtcattataagtcaagcttgagttcctcctttgagtttt
ctctgtttcagtcatctgaatgggtttctagcagtagctacagttgttga
ttcctcttccctgggcccacggttccgttgctatgtctggtttattaccg
tttatcctagaccatggtgatccactattgatagacagttcgccgagccg
gagggggacttaggatgaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_38194190_38195447
seq2: B6Ng01-097K07.b_46_1277 (reverse)

seq1  GTTGACCTGAGGAGTGGACAGTTGGACCTTAGACAGTAAGATTCTGTAGC  50
      |||| |||||||||| ||| | ||||| |    ||   ||||||||| ||
seq2  GTTG-CCTGAGGAGT-GAC-GGTGGACTT---GCA--TAGATTCTGT-GC  41

seq1  CCTGGCTGGACAAACATTCAGAAGAGCAG-AGGTGTCAGTTTGGTTACTT  99
      |   ||  ||| |||| |||||   |||| |||  ||||||  |||||| 
seq2  C--TGCATGAC-AACA-TCAGAGAGGCAGAAGGGTTCAGTT--GTTACT-  84

seq1  TGTAGAGACAGACTGCAGA-GGAGGTCCTCTATATATTGTATTAGTTTAG  148
        |  |||| | ||||||| ||||||||||   ||   ||||   | |||
seq2  --TGAAGACCGGCTGCAGAGGGAGGTCCTC---ATTAAGTAT--ATGTAG  127

seq1  ACTGAGGAGAGACAAAGAGTAGATAATTAGTCAGGGTCTGGCCAAATAGA  198
      || |||||||||||| | || ||||  ||||||||||  |||||||||| 
seq2  AC-GAGGAGAGACAAGGGGT-GATA--TAGTCAGGGTTCGGCCAAATAGG  173

seq1  TGTGGGCTCTACAGGAACCTGGGAAA-GGGCAGTCCAGGTGAATTGAGTA  247
      |||||||||| |||  |||||||||| |||||||||||||||||||||||
seq2  TGTGGGCTCTCCAG--ACCTGGGAAAGGGGCAGTCCAGGTGAATTGAGTA  221

seq1  GAGAGGTAGGTGCCAGCATCAGTCTAGGTGAAAGTAAAGATGTTTTATGG  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGTAGGTGCCAGCATCAGTCTAGGTGAAAGTAAAGATGTTTTATGG  271

seq1  CTGGGTATCCAGGGAAATAGAGAAAGCATCCTCGAGATTCAGGACTGAGA  347
      ||||||||||||| || |||||||||||||||||||||||||||||||||
seq2  CTGGGTATCCAGGAAATTAGAGAAAGCATCCTCGAGATTCAGGACTGAGA  321

seq1  AATGGGAGATCCCTGAGCAGTCTCCCACGAGAGTGGGAAGGAGTGTGTAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGGGAGATCCCTGAGCAGTCTCCCACGAGAGTGGGAAGGAGTGTGTAA  371

seq1  GAGGGGACCATTGCAAAATGGACAATCTGGAGATCCTGAACCAGTTAGTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGACCATTGCAAAATGGACAATCTGGAGATCCTGAACCAGTTAGTA  421

seq1  GTCCCCTTTGGGCCTTTTAACTCTAAGTATTAGGCTTTTAAAGGGAGAAG  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCCTTTGGGCCTTTTAACTCTAAGTATTAGGCTTTTAAAGGGAGAAG  471

seq1  TAGGTTTTTTTTTGTTTGTTTGTTTGTTTGCTTCCTTAGGAGGTCAGAGA  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTTTTTTGTTTGTTTGTTTGTTTGCTTCCTTAGGAGGTCAGAGA  521

seq1  TGATAAGCTTAAGTCCCCTAAGCTTATCTGGAGCAGTACTGAGCTTGGGT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAGCTTAAGTCCCCTAAGCTTATCTGGAGCAGTACTGAGCTTGGGT  571

seq1  GATGTACTTGATAGGTGTGGTATGCATCAGCTGGATGAGCCCTATATTCG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTACTTGATAGGTGTGGTATGCATCAGCTGGATGAGCCCTATATTCG  621

seq1  GGGTGCCAGCTGAGGTTCTTGGTTCCACCTCTTCTCTCAGGATACTTCTG  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGCCAGCTGAGGTTCTTGGTTCCACCTCTTCTCTCAGGATACTTCTG  671

seq1  GTGCAAGGGCTTGGAGAGGACAGGGTGAAATATGGAATGGGTGGAGTCCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGGGCTTGGAGAGGACAGGGTGAAATATGGAATGGGTGGAGTCCT  721

seq1  CAGTCTGTCTTTTCGTTCAGGATGTCAGATATTGCACACGAGACCAGGAG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCTGTCTTTTCGTTCAGGATGTCAGATATTGCACACGAGACCAGGAG  771

seq1  GGGTTAAACTGGATCCCTGCTGCTTTCTCCCCTTCACAGTGTTTAGAAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTAAACTGGATCCCTGCTGCTTTCTCCCCTTCACAGTGTTTAGAAGC  821

seq1  CACCATTGCTCACGGGACTGGAAAGATTAAGCAGAGTCTGGAACTGGATT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCATTGCTCACGGGACTGGAAAGATTAAGCAGAGTCTGGAACTGGATT  871

seq1  CTGGTCCTACTGGGGGCAAGTGCAGGATGATGAAGGCTTCTCCAAGGATC  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCCTACTGGGGGCAAGTGCAGGATGATGAAGGCTTCTCCAAGGATC  921

seq1  ATAGTCTTATGGCTTTAATGAAGCAGTTCTCTGAAACGATCTTAGCTTGT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTATGGCTTTAATGAAGCAGTTCTCTGAAACGATCTTAGCTTGT  971

seq1  TCATATATCTTTATTAGGGGGTATTGAATGTACATACTTTATTCAGGGTG  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATATCTTTATTAGGGGGTATTGAATGTACATACTTTATTCAGGGTG  1021

seq1  AACCAAGGGTTATATCATTTTGGGGAGGAAGGTAAGAGTATCCAGGGAGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGGGTTATATCATTTTGGGGAGGAAGGTAAGAGTATCCAGGGAGG  1071

seq1  AAAATTATCATTGACTAAAGGCTAAGGCTACTGAGATGCCTCAATGCATG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATTATCATTGACTAAAGGCTAAGGCTACTGAGATGCCTCAATGCATG  1121

seq1  GGCTATTCTGTGACCACCTGGTTAAAGGTCTCCAGGTCATATGCTCCAAG  1197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTCTGTGACCACCTGGTTAAAGGTCTCCAGGTCATATGCTCCAAG  1171

seq1  GCAGACATGGAAACAGGGAGTGAGCTAGTATCCCTCCTACCAGTCTCAGT  1247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGACATGGAAACAGGGAGTGAGCTAGTATCCCTCCTACCAGTCTCAGT  1221

seq1  TTTGAGAATTC  1258
      |||||||||||
seq2  TTTGAGAATTC  1232

seq1: chr3_38041726_38042862
seq2: B6Ng01-097K07.g_70_1190

seq1  GAATTCCATTTTACTAGGATGTGTGGGTTTTAATTTTGAGGCTTCGTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTTTACTAGGATGTGTGGGTTTTAATTTTGAGGCTTCGTTGC  50

seq1  AGTTATGTGCTGTGTGACCTATTAGAATTTCAACAGAGAATTCTAATTGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATGTGCTGTGTGACCTATTAGAATTTCAACAGAGAATTCTAATTGG  100

seq1  ACTCCACACTAAGATGATTCCCTATCAGGCTAATCCATACTTTCTTTCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCACACTAAGATGATTCCCTATCAGGCTAATCCATACTTTCTTTCTT  150

seq1  TCTTTCAACCCCTGGGGAATCACTAGGCTGTTTTAGTCCATGAACCTCTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCAACCCCTGGGGAATCACTAGGCTGTTTTAGTCCATGAACCTCTG  200

seq1  TGTCCAAATGAAAACAAACAAAGTAACCAACCAAGGAAGAAACACTGGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCAAATGAAAACAAACAAAGTAACCAACCAAGGAAGAAACACTGGGA  250

seq1  TTGTTTGTTCCCTCCGTTCTTTCTTCTTAGTTTCTCTTGTTTTACTCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGTTCCCTCCGTTCTTTCTTCTTAGTTTCTCTTGTTTTACTCATG  300

seq1  TTCGATACACTGTATAGACTGATGTTCTAGGAAGAAAAATAATTCCCTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGATACACTGTATAGACTGATGTTCTAGGAAGAAAAATAATTCCCTTT  350

seq1  GGCTTTTTCTTTTTAAGTCTTGGATAAGACACAGCCAGGATGAGCCAGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTTCTTTTTAAGTCTTGGATAAGACACAGCCAGGATGAGCCAGAA  400

seq1  AGGGTGACCCTGGCATAGACTCTGCAGTTCCCCTTTGCAGACCAAGCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTGACCCTGGCATAGACTCTGCAGTTCCCCTTTGCAGACCAAGCCAA  450

seq1  ACTCCAGACACTGAAATGGGGCTGGCATCAGGCCAAAGGAAATCTAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCCAGACACTGAAATGGGGCTGGCATCAGGCCAAAGGAAATCTAGTCT  500

seq1  GTACATGCTAAGTAGCCAACCGTTTCCGTTTCCATAGTGTCACTGGCAAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACATGCTAAGTAGCCAACCGTTTCCGTTTCCATAGTGTCACTGGCAAG  550

seq1  GAAGCTGGCTGCTGGTGCACCCACCCCAGCAGAGAAAGGAGGAGTGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGGCTGCTGGTGCACCCACCCCAGCAGAGAAAGGAGGAGTGCTCT  600

seq1  ACTGTCCCCTCGCTGCTGCTCAGTGCCAAGGTGGTGTTCAGTCATGGAGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCCCCTCGCTGCTGCTCAGTGCCAAGGTGGTGTTCAGTCATGGAGT  650

seq1  CTGCAGAGAAGCTGCCATTCCAGCCAGCAGCCATGTAGCCCTTCCTGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGAAGCTGCCATTCCAGCCAGCAGCCATGTAGCCCTTCCTGCTT  700

seq1  CCTATGGGAACTAAGGCCCCAGGGAGTCAGGAGCAGGGCTGCGAGACAGC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATGGGAACTAAGGCCCCAGGGAGTCAGGAGCAGGGCTGCGAGACAGC  750

seq1  CAGCCGCTCCTTTTCATTCTTACACACCTTTCCTCTGCTGGGAGACTCGC  800
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCGCTTCTTTTCATTCTTACACACCTTTCCTCTGCTGGGAGACTCGC  800

seq1  TGGAGGGGAACGCGATTCTGTTTTCAGCCATTTATGCATGGTGACCCCGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGGGGAACGCGATTCTGTTTTCAGCCATTTATGCATGGTGACCCCGT  850

seq1  CAGCTGTCTGGTCCTGTATTCATGTGGCCTTTCTTGTTCTTGCTCCACAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCTGTCTGGTCCTGTATTCATGTGGCCTTTCTTGTTCTTGCTCCACAT  900

seq1  CCTTTCCCAGAGTCATTATAAGTCAAGCTTGAGTTCCCCCTTTGAGCTTT  950
      ||||||||||||||||||||||||||||||||||||| |||||||| |||
seq2  CCTTTCCCAGAGTCATTATAAGTCAAGCTTGAGTTCCTCCTTTGAGTTTT  950

seq1  CTCTGTCTCAGTCATCTGAATGGGTTCCTAGCAGTAGCTACAAGTTGTTT  1000
      |||||| ||||||||||||||||||| |||||||||||||| ||||| ||
seq2  CTCTGTTTCAGTCATCTGAATGGGTTTCTAGCAGTAGCTAC-AGTTG-TT  998

seq1  GATCCATC-TCCCTTGGCCCACTGTTTCCGGTTGCTATGTCTGTGTTTTA  1049
      ||| | || ||||| ||||||| |||  | |||||||||||  || ||||
seq2  GATTCCTCTTCCCTGGGCCCACGGTT--CCGTTGCTATGTC--TGGTTTA  1044

seq1  TTCTCGTTTTATCCTTAGACATTGTGGATCACCACTATTTGATAGGCATG  1099
      ||  || ||||||| |||||  ||  |||  |||||| ||||||| || |
seq2  TTACCG-TTTATCC-TAGACCATGGTGAT--CCACTA-TTGATAGACA-G  1088

seq1  TTTCCGCTCATGCCGTAGGTGAGAATTTAGGATGAAGA  1137
      ||  ||| |  |||| ||  | | | ||||||||||||
seq2  TT--CGC-CGAGCCGGAG--GGGGACTTAGGATGAAGA  1121