BAC Information

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BAC

Clone NameB6Ng01-097N14
Chromosome3 (Build37)
Map Location 95,112,818 - 95,243,894
singlet/doubletdoublet
Overlap geneLass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt
Upstream geneThem4, Them5, Gm659, Rorc, Lingo4, Tdrkh, Oaz3, Mrpl9, LOC668403, 2310007A19Rik, Tnrc4, Snx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9
Downstream geneCtsk, Ctss, LOC100043312, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4, Ecm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-097N14.bB6Ng01-097N14.g
ACCDH908108DH908109
length1,1661,132
definitionDH908108|Mus musculus domesticus DNA, BAC clone: B6Ng01-097N14, 5' end.DH908109|Mus musculus domesticus DNA, BAC clone: B6Ng01-097N14, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,242,728 - 95,243,894)(95,112,818 - 95,113,936)
sequence
gaattcacagatctttgctggcactgaagccctttaggacagtgctgttt
tatttacaatggactcactccctgatatttacctactgaagtcatcatgg
aaaataggacagcaatcctaaaaatagatggatttagcaaggcatggtag
gtcatgcctataatcctagtactggggaagctgaggcagtctcatgtagc
ccagaagtggccttgaactcactacccagctgaggttctcatgtccatct
cttaaacactcaggagagatggagagcctaagtccagcctgaaccacaca
cccagaccctgtcaaaacagcaagtcaagcaattcaaccaggttatacaa
gcagtgcctactacctgagggttggggagttggctcagactctgctgagt
tcaagcctacattttcaaaggggtgttaaagacattcttttattattaca
acatctggatgaaatcagttatatagctgacaaaacactggacaaataat
ggaaacatttttcaagattctttataatattgtaacatcagagaactttt
ctctattttgtattttaaacgactttatgtgtatgttttgcctgtgtgta
tatatgcaacacatgcaggcttgttgtccatggaggccagaaggtggcaa
tagatctactggaattatagctgtgggtagtagcaccagtatgtgctgga
accaaacctcagtcaactccaagagcagccagtgcttgcttctaatggca
gaaccactctccagccatttttgtttactgatacacggctaccattctca
acgtaagtctttacttcttaaattctaggaaaatagagtaaaacttggta
ccacaagtctactgcataaaagtacaccaactgaagtttcgttccaaaac
tgttatccactgagtatgcagttcagttgggtagatgcttgccaggcatg
caccaagccctggcttcatccatagcacatgtaagacaggcatggttgta
actatagatcatagcacttggatcagaaatttagatcaggctggagagaa
tgataggttcagcggttagaggtatgactgctcttccagaaggtcttggg
ttttattcccatcaaacacaatggtggctcacaaccatctgaaatggaat
ctgaagccctcttctg
gaattctttactgtgaatgcgcacaaggaagggagcccaagggagtggtg
ctttcagcttgagctgttctaaggacaacacatgacactcaggcaatcag
ggttgctggcaatgcccattcttactgagctcctttgtttgtgggaaggc
acagggctttattctatagcccagactagccgggaactcatgatgaagcc
caggctggccttgagctcacaattgcctaaccttagcttcaagtgctaag
atttatgggtacgagcctttaaccccggctctgccacttgttacattctg
tagtcttagctagacatttcatcatctctacatgaacagcgtggtacagg
ggctggacagatggttcaatggttaagagcactgactgctcttccagagg
tcctgagttcaatttccagcaactacatggtggctcacaaccatctgtaa
tggaatctaatgccctcttctggtgtgtctgaagacagctacagtgtact
cacatacatgaaataaataaacaagtcttaaaaaagaaaaaagaaagaaa
aaggtgatagaaacttcagggctgaggagacaagaggctggggcatctga
cgtaataaatgaagcaatgtgtgtatggccaatagcagcatagaatcacc
ttgtatattaggggtgatagattaagtaaatgaaaatatacaactctcaa
ttaagttacttcaggtaaacaatgaataatttgttggtataagtatgacc
caaatatttaatgtgatttactttctgataacgtttatttattgtttacc
cgaaattctttttctatggcaatattctcgagttctatctcacaacccgc
cagatagggcttaattctctgcactgtgggccgaggctgaacgcctgtgg
gggctagacttcccagagtcaggattctcattttctgcatggttctggac
aggtgcagaaccttcttgtgcttagtttccctatcagagaaagagacagg
aagcaagggtccctgggagaagatggttaaagcactggctgcccctttca
gaagacctggggttcgttctcaatttacctgggtaaatcccgcatgatta
ttttacagtcattctaaaactccagtaccagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95242728_95243894
seq2: B6Ng01-097N14.b_50_1215 (reverse)

seq1  CAGAAGAGGGCATCAGATCCCATTACAGATGGTTGTGAGCCACCA-TGTG  49
      ||||||||||| |||||| ||||| |||||||||||||||||||| ||||
seq2  CAGAAGAGGGCTTCAGATTCCATTTCAGATGGTTGTGAGCCACCATTGTG  50

seq1  GTTGGTGGGAATTAAACCCAGGACC-TCTAGAAGAGCAGTCAATACTCTT  98
       ||| ||||||| ||||||| |||| ||| ||||||||||| ||||   |
seq2  TTTGATGGGAATAAAACCCAAGACCTTCTGGAAGAGCAGTC-ATACCTCT  99

seq1  AACCGCTGAA-CTATCA-TCTCTCCAGCCCTGATCTTAAATTTCTGATCC  146
      |||||||||| |||||| ||||||||| ||||||| ||||||||||||||
seq2  AACCGCTGAACCTATCATTCTCTCCAG-CCTGATC-TAAATTTCTGATCC  147

seq1  AAGTGCTATGATCTTATAGTTACAACCATGCCTGTCTTACCATGTGCTAT  196
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  AAGTGCTATGATC-TATAGTTACAACCATGCCTGTCTTA-CATGTGCTAT  195

seq1  GGATGGAGCCAGGGCTTGGTGCATGCCTGGCAAGCATTCTA-CCAACTGA  245
      ||||| |||||||||||||||||||||||||||||| |||| ||||||||
seq2  GGATGAAGCCAGGGCTTGGTGCATGCCTGGCAAGCA-TCTACCCAACTGA  244

seq1  ACTGCATACTCAGTGGATAACAGTTTTGGAACGAAACTTCAGTTGGTGTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCATACTCAGTGGATAACAGTTTTGGAACGAAACTTCAGTTGGTGTA  294

seq1  CTTTTATGCAGTAGACTTGTGGTACCAAGTTTTACTCTATTTTCCTAGAA  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATGCAGTAGACTTGTGGTACCAAGTTTTACTCTATTTTCCTAGAA  344

seq1  TTTAAGAAGTAAAGACTTACGTTGAGAATGGTAGCCGTGTATCAGTAAAC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGAAGTAAAGACTTACGTTGAGAATGGTAGCCGTGTATCAGTAAAC  394

seq1  AAAAATGGCTGGAGAGTGGTTCTGCCATTAGAAGCAAGCACTGGCTGCTC  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATGGCTGGAGAGTGGTTCTGCCATTAGAAGCAAGCACTGGCTGCTC  444

seq1  TTGGAGTTGACTGAGGTTTGGTTCCAGCACATACTGGTGCTACTACCCAC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAGTTGACTGAGGTTTGGTTCCAGCACATACTGGTGCTACTACCCAC  494

seq1  AGCTATAATTCCAGTAGATCTATTGCCACCTTCTGGCCTCCATGGACAAC  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTATAATTCCAGTAGATCTATTGCCACCTTCTGGCCTCCATGGACAAC  544

seq1  AAGCCTGCATGTGTTGCATATATACACACAGGCAAAACATACACATAAAG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGCATGTGTTGCATATATACACACAGGCAAAACATACACATAAAG  594

seq1  TCGTTTAAAATACAAAATAGAGAAAAGTTCTCTGATGTTACAATATTATA  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTTTAAAATACAAAATAGAGAAAAGTTCTCTGATGTTACAATATTATA  644

seq1  AAGAATCTTGAAAAATGTTTCCATTATTTGTCCAGTGTTTTGTCAGCTAT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCTTGAAAAATGTTTCCATTATTTGTCCAGTGTTTTGTCAGCTAT  694

seq1  ATAACTGATTTCATCCAGATGTTGTAATAATAAAAGAATGTCTTTAACAC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACTGATTTCATCCAGATGTTGTAATAATAAAAGAATGTCTTTAACAC  744

seq1  CCCTTTGAAAATGTAGGCTTGAACTCAGCAGAGTCTGAGCCAACTCCCCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTGAAAATGTAGGCTTGAACTCAGCAGAGTCTGAGCCAACTCCCCA  794

seq1  ACCCTCAGGTAGTAGGCACTGCTTGTATAACCTGGTTGAATTGCTTGACT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCAGGTAGTAGGCACTGCTTGTATAACCTGGTTGAATTGCTTGACT  844

seq1  TGCTGTTTTGACAGGGTCTGGGTGTGTGGTTCAGGCTGGACTTAGGCTCT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGTTTTGACAGGGTCTGGGTGTGTGGTTCAGGCTGGACTTAGGCTCT  894

seq1  CCATCTCTCCTGAGTGTTTAAGAGATGGACATGAGAACCTCAGCTGGGTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTCTCCTGAGTGTTTAAGAGATGGACATGAGAACCTCAGCTGGGTA  944

seq1  GTGAGTTCAAGGCCACTTCTGGGCTACATGAGACTGCCTCAGCTTCCCCA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGTTCAAGGCCACTTCTGGGCTACATGAGACTGCCTCAGCTTCCCCA  994

seq1  GTACTAGGATTATAGGCATGACCTACCATGCCTTGCTAAATCCATCTATT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACTAGGATTATAGGCATGACCTACCATGCCTTGCTAAATCCATCTATT  1044

seq1  TTTAGGATTGCTGTCCTATTTTCCATGATGACTTCAGTAGGTAAATATCA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGATTGCTGTCCTATTTTCCATGATGACTTCAGTAGGTAAATATCA  1094

seq1  GGGAGTGAGTCCATTGTAAATAAAACAGCACTGTCCTAAAGGGCTTCAGT  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGTGAGTCCATTGTAAATAAAACAGCACTGTCCTAAAGGGCTTCAGT  1144

seq1  GCCAGCAAAGATCTGTGAATTC  1167
      ||||||||||||||||||||||
seq2  GCCAGCAAAGATCTGTGAATTC  1166

seq1: chr3_95112818_95113936
seq2: B6Ng01-097N14.g_71_1202

seq1  GAATTCTTTACTGTGAATGCGCACAAGGAAGGGAGCCCAAGGGAGTGGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTACTGTGAATGCGCACAAGGAAGGGAGCCCAAGGGAGTGGTG  50

seq1  CTTTCAGCTTGAGCTGTTCTAAGGACAACACATGACACTCAGGCAATCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCAGCTTGAGCTGTTCTAAGGACAACACATGACACTCAGGCAATCAG  100

seq1  GGTTGCTGGCAATGCCCATTCTTACTGAGCTCCTTTGTTTGTGGGAAGGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTGGCAATGCCCATTCTTACTGAGCTCCTTTGTTTGTGGGAAGGC  150

seq1  ACAGGGCTTTATTCTATAGCCCAGACTAGCCGGGAACTCATGATGAAGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGGCTTTATTCTATAGCCCAGACTAGCCGGGAACTCATGATGAAGCC  200

seq1  CAGGCTGGCCTTGAGCTCACAATTGCCTAACCTTAGCTTCAAGTGCTAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCTGGCCTTGAGCTCACAATTGCCTAACCTTAGCTTCAAGTGCTAAG  250

seq1  ATTTATGGGTACGAGCCTTTAACCCCGGCTCTGCCACTTGTTACATTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATGGGTACGAGCCTTTAACCCCGGCTCTGCCACTTGTTACATTCTG  300

seq1  TAGTCTTAGCTAGACATTTCATCATCTCTACATGAACAGCGTGGTACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTTAGCTAGACATTTCATCATCTCTACATGAACAGCGTGGTACAGG  350

seq1  GGCTGGACAGATGGTTCAATGGTTAAGAGCACTGACTGCTCTTCCAGAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGACAGATGGTTCAATGGTTAAGAGCACTGACTGCTCTTCCAGAGG  400

seq1  TCCTGAGTTCAATTTCCAGCAACTACATGGTGGCTCACAACCATCTGTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGAGTTCAATTTCCAGCAACTACATGGTGGCTCACAACCATCTGTAA  450

seq1  TGGAATCTAATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAATCTAATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTACT  500

seq1  CACATACATGAAATAAATAAACAAGTCTTAAAAAAGAAAAAAGAAAGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATACATGAAATAAATAAACAAGTCTTAAAAAAGAAAAAAGAAAGAAA  550

seq1  AAGGTGATAGAAACTTCAGGGCTGAGGAGACAAGAGGCTGGGGCATCTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTGATAGAAACTTCAGGGCTGAGGAGACAAGAGGCTGGGGCATCTGA  600

seq1  CGTAATAAATGAAGCAATGTGTGTATGGCCAATAGCAGCATAGAATCACC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAATAAATGAAGCAATGTGTGTATGGCCAATAGCAGCATAGAATCACC  650

seq1  TTGTATATTAGGGGTGATAGATTAAGTAAATGAAAATATACAACTCTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATATTAGGGGTGATAGATTAAGTAAATGAAAATATACAACTCTCAA  700

seq1  TTAAGTTACTTCAGGTAAACAATGAATAATTTGTTGGTATAAGTATGACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTTACTTCAGGTAAACAATGAATAATTTGTTGGTATAAGTATGACC  750

seq1  CAAATATTTAATGTGA-TTAC-TTCTGATAACG-TTATTTATTGTTTACC  797
      |||||||||||||||| |||| ||||||||||| ||||||||||||||||
seq2  CAAATATTTAATGTGATTTACTTTCTGATAACGTTTATTTATTGTTTACC  800

seq1  CGAAATTCTTTTCTAATGGCAATA-TCTCGAGTTCTATCTCACAA-CCGC  845
      ||||||||||||   ||||||||| |||||||||||||||||||| ||||
seq2  CGAAATTCTTTTTCTATGGCAATATTCTCGAGTTCTATCTCACAACCCGC  850

seq1  CAGATAGGGCTTAA-TCTCTGCACTGT-GGCCGAGGCTGAACGCCTGT-G  892
      |||||||||||||| |||||||||||| |||||||||||||||||||| |
seq2  CAGATAGGGCTTAATTCTCTGCACTGTGGGCCGAGGCTGAACGCCTGTGG  900

seq1  GGGCTAGACTTCCCAGAGTCAGGATTCTCATTTTCTGCATGG-TCTGGAC  941
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GGGCTAGACTTCCCAGAGTCAGGATTCTCATTTTCTGCATGGTTCTGGAC  950

seq1  AGGTGCAGAACCTTCCTGTGCTTAGTTTCCCTATCAGAGAACAGAGACAG  991
      ||||||||||||||| ||||||||||||||||||||||||| ||||||||
seq2  AGGTGCAGAACCTTCTTGTGCTTAGTTTCCCTATCAGAGAA-AGAGACAG  999

seq1  GAGGC-AGGGGCACT-GGAG-AGATGGTTAAGAGCACTGGCTG-CTCTTT  1037
      || || |||| | || |||| |||||||||| ||||||||||| | ||||
seq2  GAAGCAAGGGTCCCTGGGAGAAGATGGTTAA-AGCACTGGCTGCCCCTTT  1048

seq1  CAGAAGACCT-GGGTTCAGTCTCCATTTACCCTGGGTAAATCCCGCATGA  1086
      |||||||||| ||||||  |||| ||||| ||||||||||||||||||||
seq2  CAGAAGACCTGGGGTTCGTTCTCAATTTA-CCTGGGTAAATCCCGCATGA  1097

seq1  TTA-TTTACAGTCA-TCTAAAACTCCAGTACCAGG  1119
      ||| |||||||||| ||||||||||||||||||||
seq2  TTATTTTACAGTCATTCTAAAACTCCAGTACCAGG  1132