BAC Information

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BAC

Clone NameB6Ng01-098J12
Chromosome3 (Build37)
Map Location 50,108,743 - 50,232,124
singlet/doubletdoublet
Overlap geneLOC639469, Slc7a11
Upstream gene4932443G14, LOC545519, LOC676568, LOC666247, LOC100039579, LOC100039587, LOC638779, Pcdh18, LOC100039628
Downstream geneEG621304, LOC100039667, Ccrn4l, Elf2, A630062H14, 4930583H14Rik, LOC669130, Ndufc1, Narg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-098J12.bB6Ng01-098J12.g
ACCDH908638DH908639
length1,1111,118
definitionDH908638|Mus musculus domesticus DNA, BAC clone: B6Ng01-098J12, 5' end.DH908639|Mus musculus domesticus DNA, BAC clone: B6Ng01-098J12, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,108,743 - 50,109,857)(50,230,998 - 50,232,124)
sequence
gaattctctccagctagctttcacaatgctactgactctctctgacacgt
tgggatctgcccactagttaaaagcctgaaggtgatgagatagtcgaaga
acagtctcaagatgagctgattttcccttacatggttggcctatacatta
atttctttacccatcactatgataaaactctcaattaagaaataaggagt
gagcatttatttcagcccaggatctaaggagataagttcacataagagaa
agcatgctgacaggtggctatacggtggccagcatataagcctgacaatt
gttaagtcttctactcttaatttgcagcagagagagagagagaatataat
atctaagagcaatcatggaacaacttctatgggtagatgctacttcttgg
tctttacaaggcatctcaaagcaacaaaatcagcaagggaccaagtgttc
atactatttcatatttaaaccagagttccctaagaaacaggaacaaagtt
ttttccggtcagaaaatatacccatcaaagaagaaagggcatactctgat
attcccaagcatagataaaacttacacatgttttatagcccactgatcag
caaaggaggacaggtgttttcagatttgaaacacttgaaatccctttgtc
atgagtagtagtcgatgtgatatcattgaacaaagctgaaaaagaaaaat
gcagttggcttcttggagccatgcagactggcacagcaatggggagatgg
gccatgcatctaagtcattctctgtttcaggaatcactcataggacctga
ctctgaggttcaggatccctcatgtttgtattcattgtcacatttatgag
atagcaccagcagggcacagattaatttgacaacattgatactaatccct
gagaaaagctttttaactatgcagaagtttaaagaagctgagaagcatgg
aagattcctaatgatgttagcattcctgaagtttgtcttggtagcactga
aaatttgagataataacttaattactcactttccagttgttattgttctc
aggatatccctctgaaaccccataatcttatctgtgttaatgacagtggt
ggacatagttt
gaattccaagaatagttcttagtaggtctggtcctgatggtacagaacag
gatctcagacaaagcacttcttaccccttcttcagtactatcctgaccac
tggatgacttcaggatgaagctattttactttattgttattgcataaaaa
tatatgttcattgttaccaatgcgtaaagaataaaagagatcctctgact
gtataggagacttatccaagcttctcagacttgagtgtctctcaaagagc
catcttaatgcaggagagcctggatctggacagagcctgggattctgcac
ttcttaatttctggtagttcatgccagcactgcaggtttatagatctcat
ttcgactgacaaggacctaagacattgttgtgctcatgggactttgcctt
ttgtgactgtgtctgtttgtttgcagctgtggtgatggtcctaaatagca
cgagtgtcagctggagtgcccggatccagattttcctaaccttttgcaag
ctcacagcaattctgataattatagtccctggagttatacagctaattaa
aggtatgggctgaaaaggaaatgcgttttaaactgcgtatctgcttctgg
tctcttctaacaccgactttcgcttgtctagcagaatccttaattagtct
ttgcttgtggaacttaaactctgtactgtcatctaattgatttgaaaggc
tacatcgaggatgagttggtatttatagttgaatggcagcaagagaatta
agactagatggagcaactaaaatgaggtgtctgagaattcccttggtatg
agtggcttggagtcaaccctaagtaaaaagcaaaaacaaaccaaaatgaa
tttgctatttagtttaagtacagatcaatatgttctttgtttgcactcca
gaacttttcagtagtagaaacaattatgaaagataaaaaaatttctggaa
aataatgaaagatgaccgataattcttgatttttttatttgcatttcttc
actccgagatcagtatacccagaagagtagtgaaatcagatcttatatga
caataaaaatgcaaaaacttagctttatatatcattattttccttggtaa
aacttcatttctgaagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_50108743_50109857
seq2: B6Ng01-098J12.b_48_1158

seq1  GAATTCTCTCCAGCTAGCTTTCACAATGCTACTGACTCTCTCTGACACGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCCAGCTAGCTTTCACAATGCTACTGACTCTCTCTGACACGT  50

seq1  TGGGATCTGCCCACTAGTTAAAAGCCTGAAGGTGATGAGATAGTCGAAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGATCTGCCCACTAGTTAAAAGCCTGAAGGTGATGAGATAGTCGAAGA  100

seq1  ACAGTCTCAAGATGAGCTGATTTTCCCTTACATGGTTGGCCTATACATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTCTCAAGATGAGCTGATTTTCCCTTACATGGTTGGCCTATACATTA  150

seq1  ATTTCTTTACCCATCACTATGATAAAACTCTCAATTAAGAAATAAGGAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTTTACCCATCACTATGATAAAACTCTCAATTAAGAAATAAGGAGT  200

seq1  GAGCATTTATTTCAGCCCAGGATCTAAGGAGATAAGTTCACATAAGAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATTTATTTCAGCCCAGGATCTAAGGAGATAAGTTCACATAAGAGAA  250

seq1  AGCATGCTGACAGGTGGCTATACGGTGGCCAGCATATAAGCCTGACAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATGCTGACAGGTGGCTATACGGTGGCCAGCATATAAGCCTGACAATT  300

seq1  GTTAAGTCTTCTACTCTTAATTTGCAGCAGAGAGAGAGAGAGAATATAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTCTTCTACTCTTAATTTGCAGCAGAGAGAGAGAGAGAATATAAT  350

seq1  ATCTAAGAGCAATCATGGAACAACTTCTATGGGTAGATGCTACTTCTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAAGAGCAATCATGGAACAACTTCTATGGGTAGATGCTACTTCTTGG  400

seq1  TCTTTACAAGGCATCTCAAAGCAACAAAATCAGCAAGGGACCAAGTGTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTACAAGGCATCTCAAAGCAACAAAATCAGCAAGGGACCAAGTGTTC  450

seq1  ATACTATTTCATATTTAAACCAGAGTTCCCTAAGAAACAGGAACAAAGTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTATTTCATATTTAAACCAGAGTTCCCTAAGAAACAGGAACAAAGTT  500

seq1  TTTTCCGGTCAGAAAATATACCCATCAAAGAAGAAAGGGCATACTCTGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCGGTCAGAAAATATACCCATCAAAGAAGAAAGGGCATACTCTGAT  550

seq1  ATTCCCAAGCATAGATAAAACTTACACATGTTTTATAGCCCACTGATCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCCAAGCATAGATAAAACTTACACATGTTTTATAGCCCACTGATCAG  600

seq1  CAAAGGAGGACAGGTGTTTTCAGATTTGAAACACTTGAAATCCCTTTGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGAGGACAGGTGTTTTCAGATTTGAAACACTTGAAATCCCTTTGTC  650

seq1  ATGAGTAGTAGTCGATGTGATATCATTGAACAAAGCTGAAAAAGAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTAGTAGTCGATGTGATATCATTGAACAAAGCTGAAAAAGAAAAAT  700

seq1  GCAGTTGGCTTCTTGGAGCCATGCAGACTGGCACAGCAATGGGGAGATGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTTGGCTTCTTGGAGCCATGCAGACTGGCACAGCAATGGGGAGATGG  750

seq1  GCCATGCATCTAAGTCATTCTCTGTTTCAGGAATCACTCATAGGACCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCATGCATCTAAGTCATTCTCTGTTTCAGGAATCACTCATAGGACCTGA  800

seq1  CTCTGAGGTTCAGGATCCCTCATGTTTGTATTCATTGTCACATTTATGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGGTTCAGGATCCCTCATGTTTGTATTCATTGTCACATTTATGAG  850

seq1  ATAGCACCAGCAGGGCACAGATTAATTTGACAACATTGATACTAATCACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  ATAGCACCAGCAGGGCACAGATTAATTTGACAACATTGATACTAATCCCT  900

seq1  GAGAAAAGCTTTTTAACTATGCAGAAGTTTAAAGAAGCTGAG-AGCATGG  949
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAGAAAAGCTTTTTAACTATGCAGAAGTTTAAAGAAGCTGAGAAGCATGG  950

seq1  -AGATTCCTAATGATGTTAGCATTCCTGAAGTTTTGTCTTGGTAGCACTG  998
       |||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  AAGATTCCTAATGATGTTAGCATTCCTGAAG-TTTGTCTTGGTAGCACTG  999

seq1  AAGAATTTTGAGATAATAAACTTAATTACTCACTTTCCAGTTGTTTATTG  1048
      |  || ||||||||||| ||||||||||||||||||||||||| ||||||
seq2  A--AAATTTGAGATAAT-AACTTAATTACTCACTTTCCAGTTG-TTATTG  1045

seq1  TTCTCAGGATATCCCTCTGAAACCCCATAAATCTTTAATCTGTG-TAATG  1097
      |||||||||||||||||||||||||||| ||||||  ||||||| |||||
seq2  TTCTCAGGATATCCCTCTGAAACCCCAT-AATCTT--ATCTGTGTTAATG  1092

seq1  ACAGTGGT-GACATAGTTT  1115
      |||||||| ||||||||||
seq2  ACAGTGGTGGACATAGTTT  1111

seq1: chr3_50230998_50232124
seq2: B6Ng01-098J12.g_67_1184 (reverse)

seq1  TTCTTCAGAAATGAAAGTTTTA-CATAGAAAATAATGTAATAATAAAAGC  49
      ||||||||||||| |||||||| ||  ||||||||||  |||   |||||
seq2  TTCTTCAGAAATG-AAGTTTTACCAAGGAAAATAATG--ATATATAAAGC  47

seq1  TAAGTTTTTGCAATGTTTTATTGTCATATAAGGATCTTGATTTCACTACT  99
      ||||||||||||   |||||||||||||||| |||| |||||||||||||
seq2  TAAGTTTTTGCA--TTTTTATTGTCATATAA-GATC-TGATTTCACTACT  93

seq1  CTTCTGTGTATACTGATCTCGGAGTGAAGAAATGCAAATGAAAAAAATCA  149
      |||||| |||||||||||||||||||||||||||||||| ||||||||||
seq2  CTTCTGGGTATACTGATCTCGGAGTGAAGAAATGCAAAT-AAAAAAATCA  142

seq1  AGAATTATCGGTCATCTTTCATTATTTTCCAGAAATATTTTTATCTTTCA  199
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGAATTATCGGTCATCTTTCATTATTTTCCAGAAATTTTTTTATCTTTCA  192

seq1  TAATTGTTTCTACTACTGAAAAGTTCTGGAGTGCAAACAAAGAACATATT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTGTTTCTACTACTGAAAAGTTCTGGAGTGCAAACAAAGAACATATT  242

seq1  GATCTGTACTTAAAACTAAATAGCAAATTCATTTTGGTTTGTTTTTGCTT  299
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  GATCTGTACTT-AAACTAAATAGCAAATTCATTTTGGTTTGTTTTTGCTT  291

seq1  TTTACTTTAGGGTTGACTCCAAGCCACTCATACCAAGGGAATTCTCAGAC  349
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAC-TTAGGGTTGACTCCAAGCCACTCATACCAAGGGAATTCTCAGAC  340

seq1  ACCTCATTTTAGTTGCTCCATCTAGTCTTAATTCTCTTGCTGCCATTCAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCATTTTAGTTGCTCCATCTAGTCTTAATTCTCTTGCTGCCATTCAA  390

seq1  CTATAAATACCAACTCATCCTCGATGTAGCCTTTCAAATCAATTAGATGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAAATACCAACTCATCCTCGATGTAGCCTTTCAAATCAATTAGATGA  440

seq1  CAGTACAGAGTTTAAGTTCCACAAGCAAAGACTAATTAAGGATTCTGCTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAGAGTTTAAGTTCCACAAGCAAAGACTAATTAAGGATTCTGCTA  490

seq1  GACAAGCGAAAGTCGGTGTTAGAAGAGACCAGAAGCAGATACGCAGTTTA  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGCGAAAGTCGGTGTTAGAAGAGACCAGAAGCAGATACGCAGTTTA  540

seq1  AAACGCATTTCCTTTTCAGCCCATACCTTTAATTAGCTGTATAACTCCAG  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACGCATTTCCTTTTCAGCCCATACCTTTAATTAGCTGTATAACTCCAG  590

seq1  GGACTATAATTATCAGAATTGCTGTGAGCTTGCAAAAGGTTAGGAAAATC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTATAATTATCAGAATTGCTGTGAGCTTGCAAAAGGTTAGGAAAATC  640

seq1  TGGATCCGGGCACTCCAGCTGACACTCGTGCTATTTAGGACCATCACCAC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCCGGGCACTCCAGCTGACACTCGTGCTATTTAGGACCATCACCAC  690

seq1  AGCTGCAAACAAACAGACACAGTCACAAAAGGCAAAGTCCCATGAGCACA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCAAACAAACAGACACAGTCACAAAAGGCAAAGTCCCATGAGCACA  740

seq1  ACAATGTCTTAGGTCCTTGTCAGTCGAAATGAGATCTATAAACCTGCAGT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGTCTTAGGTCCTTGTCAGTCGAAATGAGATCTATAAACCTGCAGT  790

seq1  GCTGGCATGAACTACCAGAAATTAAGAAGTGCAGAATCCCAGGCTCTGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGCATGAACTACCAGAAATTAAGAAGTGCAGAATCCCAGGCTCTGTC  840

seq1  CAGATCCAGGCTCTCCTGCATTAAGATGGCTCTTTGAGAGACACTCAAGT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATCCAGGCTCTCCTGCATTAAGATGGCTCTTTGAGAGACACTCAAGT  890

seq1  CTGAGAAGCTTGGATAAGTCTCCTATACAGTCAGAGGATCTCTTTTATTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGCTTGGATAAGTCTCCTATACAGTCAGAGGATCTCTTTTATTC  940

seq1  TTTACGCATTGGTAACAATGAACATATATTTTTATGCAATAACAATAAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACGCATTGGTAACAATGAACATATATTTTTATGCAATAACAATAAAG  990

seq1  TAAAATAGCTTCATCCTGAAGTCATCCAGTGGTCAGGATAGTACTGAAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATAGCTTCATCCTGAAGTCATCCAGTGGTCAGGATAGTACTGAAGA  1040

seq1  AGGGGTAAGAAGTGCTTTGTCTGAGATCCTGTTCTGTACCATCAGGACCA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGTAAGAAGTGCTTTGTCTGAGATCCTGTTCTGTACCATCAGGACCA  1090

seq1  GACCTACTAAGAACTATTCTTGGAATTC  1127
      ||||||||||||||||||||||||||||
seq2  GACCTACTAAGAACTATTCTTGGAATTC  1118