BAC Information

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BAC

Clone NameB6Ng01-099B12
Chromosome3 (Build37)1 (Build37)
Map Location 33,795,040 - 33,796,201111,550,314 - 111,550,379
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneUsp13, Pex2, EG545512, LOC100041058, Ttc14, Ccdc39
Downstream geneLOC100040232, LOC100041072, Fxr1h, Dnajc19, LOC435727, EG665636, EG622074, Sox2, LOC100041108
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099B12.bB6Ng01-099B12.g
ACCDH908987DH908988
length1,145126
definitionDH908987|Mus musculus domesticus DNA, BAC clone: B6Ng01-099B12, 5' end.DH908988|Mus musculus domesticus DNA, BAC clone: B6Ng01-099B12, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(33,795,040 - 33,796,201)(111,550,314 - 111,550,379)
sequence
gaattcctctacagccggaggggctccagaatcagggtaccatggagagg
cgactctaggggctgggagtggcgtgtgaaggggatgaaccgtcagtcct
ggtggtccgaccacagggagtctagggagacagtttcagtcttaaacagg
cactatctttagacaggatgctcattacggaagtaaaaagacaccggagc
caggctctcctctcctcaggactgccctgttggaggagtttctcctcctg
cttgcatcactggctagcctgaaactcgctatatagaataggctgcattt
gaacttgtatcggtgttcctgcctccgactccagcacaactagaaaaagc
acacccttctagttgggtgagtcacagcataggtgcatatcacttattaa
aaattcttttgtgatttatttgtaccctaaatttgtttactagggggatt
tttgtaggtgacatttaattttgtttcacaagggggacagtctgagaaat
tgtgccatccactgatttgttgttgttgttgttgttgctgccgctgctgt
attcatttgtaaccagtactcccaactcttcctctcttgaggaattactt
ctcatgagaagattattcgctacatatctagttgatactgatgcagatag
agaaactagggtgtgctaattaacaatctgtgcacatttatcacccgagc
caagggctcttcagtgacattcttggaatgtggaccccacaatcctattt
ttcactaaagtccttccaataaagttagatgtgtactgatcagtacagaa
ataagggtctcaggcctgctcttggccttgggctaaatttggttctcttg
agggctggggatgtggctcaatcagtagcatgtttgcctaccatgtgcaa
aatcctgggtttcatgcctagcaccacgtaaatcacttgatggctcacac
cttgtaatctcatactcagtggtagagtcagagtatcaggttcaaggtca
tctagactatatagtggagttctaggcagcctgggctactgatacttcgt
cttattaaaaaaaatctgaaagcccaagataagagctgtaggtctctgga
agacttctttcctggaggtcagctcttaccctgctgccaggaaac
attgtttttaatagctgagtagtactccattatgtttgttcttttcatgg
tgtcccagatttcctggatgttttgtgtctggagattttctttagatgta
acattttcattggctaatgtatccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_33795040_33796201
seq2: B6Ng01-099B12.b_47_1191 (reverse)

seq1  GTTTCCTGGGCAGCAGTGTGTAAGGAGCTGACCTCCAGGAAAGAAGTCTT  50
      ||||||| |||||||| ||   | ||||||||||||||||||||||||||
seq2  GTTTCCT-GGCAGCAGGGT---AAGAGCTGACCTCCAGGAAAGAAGTCTT  46

seq1  CCAGAGACCTACAGCTCTTATCTTTGGGCTCTTCAAGATTTTTTTTTTAA  100
      |||||||||||||||||||||| ||||||| ||| |||||||||||   |
seq2  CCAGAGACCTACAGCTCTTATC-TTGGGCT-TTC-AGATTTTTTTT---A  90

seq1  ATAGAGACGGAGTATCAGGTAGCCCAGGCTTGCCTAGAACT-CACTATAT  149
      ||| ||||| ||||||| ||||||||||| ||||||||||| ||||||||
seq2  ATA-AGACGAAGTATCA-GTAGCCCAGGC-TGCCTAGAACTCCACTATAT  137

seq1  AGTCTAGAATGACCTTGAACCTGATACTCTGACTCTACCACTTGAGTATT  199
      ||||||| ||||||||||||||||||||||||||||||||| |||||| |
seq2  AGTCTAG-ATGACCTTGAACCTGATACTCTGACTCTACCAC-TGAGTA-T  184

seq1  GAGATTAC-AGGTGTGAGCCATCAAAGGTGATTTACGTGGTGCTAGGCAT  248
      |||||||| ||||||||||||||||  |||||||||||||||||||||||
seq2  GAGATTACAAGGTGTGAGCCATCAA--GTGATTTACGTGGTGCTAGGCAT  232

seq1  GAAACCCAGGATTTTGCACATGGTAGGCAAACATGCTACTGATTGAGCCA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACCCAGGATTTTGCACATGGTAGGCAAACATGCTACTGATTGAGCCA  282

seq1  CATCCCCAGCCCTCAAGAGAACCAAATTTAGCCCAAGGCCAAGAGCAAGG  348
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  CATCCCCAGCCCTCAAGAGAACCAAATTTAGCCCAAGGCCAAGAGC-AGG  331

seq1  CCTGAGACCCTTATTTCTGTACTGATCAGTACACATCTAACTTTATTGGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGACCCTTATTTCTGTACTGATCAGTACACATCTAACTTTATTGGA  381

seq1  AGGACTTTAGTGAAAAATAGGATTGTGGGGTCCACATTCCAAGAATGTCA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTTTAGTGAAAAATAGGATTGTGGGGTCCACATTCCAAGAATGTCA  431

seq1  CTGAAGAGCCCTTGGCTCGGGTGATAAATGTGCACAGATTGTTAATTAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAGAGCCCTTGGCTCGGGTGATAAATGTGCACAGATTGTTAATTAGC  481

seq1  ACACCCTAGTTTCTCTATCTGCATCAGTATCAACTAGATATGTAGCGAAT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCCTAGTTTCTCTATCTGCATCAGTATCAACTAGATATGTAGCGAAT  531

seq1  AATCTTCTCATGAGAAGTAATTCCTCAAGAGAGGAAGAGTTGGGAGTACT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTCTCATGAGAAGTAATTCCTCAAGAGAGGAAGAGTTGGGAGTACT  581

seq1  GGTTACAAATGAATACAGCAGCGGCAGCAACAACAACAACAACAACAAAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTACAAATGAATACAGCAGCGGCAGCAACAACAACAACAACAACAAAT  631

seq1  CAGTGGATGGCACAATTTCTCAGACTGTCCCCCTTGTGAAACAAAATTAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGGATGGCACAATTTCTCAGACTGTCCCCCTTGTGAAACAAAATTAA  681

seq1  ATGTCACCTACAAAAATCCCCCTAGTAAACAAATTTAGGGTACAAATAAA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCACCTACAAAAATCCCCCTAGTAAACAAATTTAGGGTACAAATAAA  731

seq1  TCACAAAAGAATTTTTAATAAGTGATATGCACCTATGCTGTGACTCACCC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACAAAAGAATTTTTAATAAGTGATATGCACCTATGCTGTGACTCACCC  781

seq1  AACTAGAAGGGTGTGCTTTTTCTAGTTGTGCTGGAGTCGGAGGCAGGAAC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAAGGGTGTGCTTTTTCTAGTTGTGCTGGAGTCGGAGGCAGGAAC  831

seq1  ACCGATACAAGTTCAAATGCAGCCTATTCTATATAGCGAGTTTCAGGCTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGATACAAGTTCAAATGCAGCCTATTCTATATAGCGAGTTTCAGGCTA  881

seq1  GCCAGTGATGCAAGCAGGAGGAGAAACTCCTCCAACAGGGCAGTCCTGAG  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGATGCAAGCAGGAGGAGAAACTCCTCCAACAGGGCAGTCCTGAG  931

seq1  GAGAGGAGAGCCTGGCTCCGGTGTCTTTTTACTTCCGTAATGAGCATCCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGAGAGCCTGGCTCCGGTGTCTTTTTACTTCCGTAATGAGCATCCT  981

seq1  GTCTAAAGATAGTGCCTGTTTAAGACTGAAACTGTCTCCCTAGACTCCCT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTAAAGATAGTGCCTGTTTAAGACTGAAACTGTCTCCCTAGACTCCCT  1031

seq1  GTGGTCGGACCACCAGGACTGACGGTTCATCCCCTTCACACGCCACTCCC  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTCGGACCACCAGGACTGACGGTTCATCCCCTTCACACGCCACTCCC  1081

seq1  AGCCCCTAGAGTCGCCTCTCCATGGTACCCTGATTCTGGAGCCCCTCCGG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCCTAGAGTCGCCTCTCCATGGTACCCTGATTCTGGAGCCCCTCCGG  1131

seq1  CTGTAGAGGAATTC  1162
      ||||||||||||||
seq2  CTGTAGAGGAATTC  1145

seq1: chr1_111550314_111550379
seq2: B6Ng01-099B12.g_69_199 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  ATGGATACATTAGCCAATGAAAATGTTACATCTAAAGAAAATCTCCAGAC  50

seq1  ---ATGGATACAGAAAATGTGGTAC------------ATTTACACAATGG  35
         |   || ||| |||| ||| ||            |   ||| |||||
seq2  ACAAAACATCCAGGAAATCTGGGACACCATGAAAAGAACAAACATAATGG  100

seq1  AGTACTACTCAGCTATTAAAAACAATGAATT  66
      |||||||||||||||||||||||||||||||
seq2  AGTACTACTCAGCTATTAAAAACAATGAATT  131