BAC Information

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BAC

Clone NameB6Ng01-099E10
Chromosome3 (Build37)
Map Location 101,019,298 - 101,183,384
singlet/doubletdoublet
Overlap geneLOC668583, LOC669017, Cd2, LOC100043490, Igsf3
Upstream geneLOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1, Trim45, Ttf2, Igsf2, Ptgfrn, LOC668578
Downstream geneLOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2, LOC100043047, Casq2, Vangl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099E10.bB6Ng01-099E10.g
ACCDH909116DH909117
length4101,088
definitionDH909116|Mus musculus domesticus DNA, BAC clone: B6Ng01-099E10, 5' end.DH909117|Mus musculus domesticus DNA, BAC clone: B6Ng01-099E10, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(101,019,298 - 101,019,713)(101,182,286 - 101,183,384)
sequence
atctagttttagggataaagatgattttaaatccagatgtagctcaggcc
tacaatcccaagctgagacaggaggatcactgagagttcaaagctaatct
gagcttcttagtgagctccagcctagtctggactgtctgactaaactttg
ttgtaaaaaatccaacacaaggatggaaggggaagctcagtggttaagga
agtttgctgctttttttcaaaggaccagagttcaggtcccatcacccaca
gcacaactggcctagaaccccagctctggggaatctttaacagaccacct
tcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttcttc
ttcttcttcttcttcttctccttctccttctccctctccctctccctctc
cctctccctc
gaattcaagactaaagtccatcctcattccggatgcctgttaacttttat
aagggtgcagataattcagagacaacctccacggataaatcctgtaagtg
caagaaacctagaatggagacgcgagcgaccagctgcaggaacttctctg
aatgcagagaagggggggtgtgtgtccattcttgaggtctgaggtgagaa
ggcaccaggtgccagctatggagtttaggagaaaccagagcattggaaaa
tacatagtggagattgctcaacatcataccaggaagagaccaggggatgg
cggcctgcagagaggactgggggctcacttctgagaccacggtttctccc
tcctacttggggacttcagccttctttctctgagggcatgaaaaccgatc
ctaacacaacccctggccaggcagcaccctgccttcagcttcacctccca
caaggactatgagctggacttccttggtgaggagacacagaaccagtgtc
ttcaatacacacttagcctacagacttcttagggaaaacaaagcagccct
tcagcccccatcccacccactcccacctttcccctccaaaaacaacaaca
aaaaaaaagcaccattattcatgaaagcacagttcccaatatgttgtaac
ttccctggaacctatgcagacacacacaaaagtaaagacactggaagccc
tcaatccacacagcaaccctaagccacagccttgcaagtgaggggcttta
acccaaaggccctggacagcttaaagacaaccagtatgccaccgttcttg
atgggtcggaaacaaacagaccctcttggtactttaatccactctgtcac
actctggctaaccccctctgcctcccaaatgctgtgttgatggggagaac
cacaaggaattagcaatgagatcgggtaaacttcacagctatagaactga
tagcagtcacttacccagcacagccagacagctcaacactgggaaaaagc
acttcatgtcgggggcagcggcagcaggaaagacactgcacaggcactgt
gcttttccaccggctatctctcattactgcaatccact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_101019298_101019713
seq2: B6Ng01-099E10.b_48_463

seq1  GAATTCATCTAGTTTTAGGGATAAAGATGATTTTAAATCCAGATGTAGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCTAGTTTTAGGGATAAAGATGATTTTAAATCCAGATGTAGCT  50

seq1  CAGGCCTACAATCCCAAGCTGAGACAGGAGGATCACTGAGAGTTCAAAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCTACAATCCCAAGCTGAGACAGGAGGATCACTGAGAGTTCAAAGC  100

seq1  TAATCTGAGCTTCTTAGTGAGCTCCAGCCTAGTCTGGACTGTCTGACTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTGAGCTTCTTAGTGAGCTCCAGCCTAGTCTGGACTGTCTGACTAA  150

seq1  ACTTTGTTGTAAAAAATCCAACACAAGGATGGAAGGGGAAGCTCAGTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGTTGTAAAAAATCCAACACAAGGATGGAAGGGGAAGCTCAGTGGT  200

seq1  TAAGGAAGTTTGCTGCTTTTTTTCAAAGGACCAGAGTTCAGGTCCCATCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGGAAGTTTGCTGCTTTTTTTCAAAGGACCAGAGTTCAGGTCCCATCA  250

seq1  CCCACAGCACAACTGGCCTAGAACCCCAGCTCTGGGGAATCTTTAACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAGCACAACTGGCCTAGAACCCCAGCTCTGGGGAATCTTTAACAGA  300

seq1  CCACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC  350

seq1  TTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTCCTTCTCCCTCTCCCTCTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTTCTTCTTCTTCTTCTCCTTCTCCTTCTCCCTCTCCCTCTC  400

seq1  CCTCTCCCTCTCCCTC  416
      ||||||||||||||||
seq2  CCTCTCCCTCTCCCTC  416

seq1: chr3_101182286_101183384
seq2: B6Ng01-099E10.g_69_1156 (reverse)

seq1  AGTGGATTGGCAGTAATGAGAGATTAGGCGGTGGGAAAAGCACGGTGCCC  50
      |||||||| |||||||||||||| ||| |||| |||||||||| ||| ||
seq2  AGTGGATT-GCAGTAATGAGAGA-TAGCCGGT-GGAAAAGCACAGTG-CC  46

seq1  TGTGCAGTGTCCTTTTCCTGCTGCCGCTGCCGCCGACATGAAGTGCTTTT  100
      |||||||||||  |||||||||||||||||| ||||||||||||||||||
seq2  TGTGCAGTGTC--TTTCCTGCTGCCGCTGCCCCCGACATGAAGTGCTTTT  94

seq1  TCCCAGTGTTGAGCTGTCTGGCTGTGCTGGGTAAGTGACTGCTTATCAGT  150
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TCCCAGTGTTGAGCTGTCTGGCTGTGCTGGGTAAGTGACTGC-TATCAGT  143

seq1  TCTATAGCTGTGAAAGTTTAACCCGATCTCATTGCTAATTCCTTGTGGTT  200
      |||||||||||| |||||| ||||||||||||||||||||||||||||||
seq2  TCTATAGCTGTG-AAGTTT-ACCCGATCTCATTGCTAATTCCTTGTGGTT  191

seq1  CTCTCCCATCAACACAGCATTTTGGGAGGCAGAGGGGGTTAGCCAGAGTG  250
      ||| ||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CTC-CCCATCAACACAGCA-TTTGGGAGGCAGAGGGGGTTAGCCAGAGTG  239

seq1  TGACAGAGTGGATTAAAGTACCAAGAGGGTCTGTTTGTTTCCGACCCATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGAGTGGATTAAAGTACCAAGAGGGTCTGTTTGTTTCCGACCCATC  289

seq1  AAGAACGGTGGCATACTGGTTGTCTTTAAGCTGTCCAGGGCCTTTGGGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACGGTGGCATACTGGTTGTCTTTAAGCTGTCCAGGGCCTTTGGGTT  339

seq1  AAAGCCCCTCACTTGCAAGGCTGTGGCTTAGGGTTGCTGTGTGGATTGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCCCCTCACTTGCAAGGCTGTGGCTTAGGGTTGCTGTGTGGATTGAG  389

seq1  GGCTTCCAGTGTCTTTACTTTTGTGTGTGTCTGCATAGGTTCCAGGGAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTCCAGTGTCTTTACTTTTGTGTGTGTCTGCATAGGTTCCAGGGAAG  439

seq1  TTACAACATATTGGGAACTGTGCTTTCATGAATAATGGTGCTTTTTTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAACATATTGGGAACTGTGCTTTCATGAATAATGGTGCTTTTTTTTT  489

seq1  GTTGTTGTTTTTGGAGGGGAAAGGTGGGAGTGGGTGGGATGGGGGCTGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGTTTTTGGAGGGGAAAGGTGGGAGTGGGTGGGATGGGGGCTGAA  539

seq1  GGGCTGCTTTGTTTTCCCTAAGAAGTCTGTAGGCTAAGTGTGTATTGAAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGCTTTGTTTTCCCTAAGAAGTCTGTAGGCTAAGTGTGTATTGAAG  589

seq1  ACACTGGTTCTGTGTCTCCTCACCAAGGAAGTCCAGCTCATAGTCCTTGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGTTCTGTGTCTCCTCACCAAGGAAGTCCAGCTCATAGTCCTTGT  639

seq1  GGGAGGTGAAGCTGAAGGCAGGGTGCTGCCTGGCCAGGGGTTGTGTTAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGTGAAGCTGAAGGCAGGGTGCTGCCTGGCCAGGGGTTGTGTTAGG  689

seq1  ATCGGTTTTCATGCCCTCAGAGAAAGAAGGCTGAAGTCCCCAAGTAGGAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGTTTTCATGCCCTCAGAGAAAGAAGGCTGAAGTCCCCAAGTAGGAG  739

seq1  GGAGAAACCGTGGTCTCAGAAGTGAGCCCCCAGTCCTCTCTGCAGGCCGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAACCGTGGTCTCAGAAGTGAGCCCCCAGTCCTCTCTGCAGGCCGC  789

seq1  CATCCCCTGGTCTCTTCCTGGTATGATGTTGAGCAATCTCCACTATGTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCCCCTGGTCTCTTCCTGGTATGATGTTGAGCAATCTCCACTATGTAT  839

seq1  TTTCCAATGCTCTGGTTTCTCCTAAACTCCATAGCTGGCACCTGGTGCCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATGCTCTGGTTTCTCCTAAACTCCATAGCTGGCACCTGGTGCCT  889

seq1  TCTCACCTCAGACCTCAAGAATGGACACACACCCCCCCTTCTCTGCATTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACCTCAGACCTCAAGAATGGACACACACCCCCCCTTCTCTGCATTC  939

seq1  AGAGAAGTTCCTGCAGCTGGTCGCTCGCGTCTCCATTCTAGGTTTCTTGC  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTTCCTGCAGCTGGTCGCTCGCGTCTCCATTCTAGGTTTCTTGC  989

seq1  ACTTACAGGATTTATCCGTGGAGGTTGTCTCTGAATTATCTGCACCCTTA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTACAGGATTTATCCGTGGAGGTTGTCTCTGAATTATCTGCACCCTTA  1039

seq1  TAAAAGTTAACAGGCATCCGGAATGAGGATGGACTTTAGTCTTGAATTC  1099
      |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGTTAACAGGCATCCGGAATGAGGATGGACTTTAGTCTTGAATTC  1088