BAC Information

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BAC

Clone NameB6Ng01-099E24
Chromosome3 (Build37)7 (Build37)
Map Location 41,058,735 - 41,059,24915,974,258 - 15,975,063
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC100040882, Intu, Slc25a31, Hspa4l, Plk4, Mfsd8, LOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2
Downstream geneEG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e, LOC666031
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099E24.bB6Ng01-099E24.g
ACCDH909142DH909143
length1,010809
definitionDH909142|Mus musculus domesticus DNA, BAC clone: B6Ng01-099E24, 5' end.DH909143|Mus musculus domesticus DNA, BAC clone: B6Ng01-099E24, 3' end.
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(41,058,735 - 41,059,249)(15,974,258 - 15,975,063)
sequence
gaattcttcgtttagctctgagccccatttttaaacgggtttatttgatt
ttctgtagtccaccttcttgatttctttatatatattggatatcagtccc
ctctctgatttaggataggtaaagatcctttcccaatatgttggtggtct
tttttgtcttattgactttgtcttttgcctggcagaagctttgcaatttt
atgaggtctcatttgtcgattctcgatcttaacagcacaagccattgctg
atctattcaggatttttgcccactgtacccatatcttcgaggcttttccc
tactttctcctccatatgtatcagtatgtctggttttatgtggagttcct
taatccacttaaatttgaccttagtacaaggagataggaatggatcaatt
cgcattcttctacatgataacagccatttgtgccagcaccatttgttgaa
aatgctgtcttttttccactggatgttctttgctcccttgtcaaagatca
agtgaccataggtgtgtgattttatttctgggtcttcagttctattccat
tggtctacttgtctgtccctataccagtaccatgcagtttttatcacaat
tgctctgtagtacaactttaggtcaccatggtgaatccacaggggaggtt
ttttttaatctttgagcagaattgttgctatcctaggttttttgttattc
cagacgaatttgcagattgccctttctaattcgttgaagaattgagttgg
aattttgatggggattgcattgagtccttagattgcttttggcaagatag
ccatttttttactctatttgatcctgccaatccatgagcatgggagttct
ttccatcttctgggatcttctttaaatttctttcttagagacttgatgtt
cttatcatacagatctttcacttccttagttaggagtcaggccaaggtat
ttatattattgttgatatggagaaggtgttgttccctaattctttctcag
cctgtttatt
gaattccaagtttgcagagatatataagggcaggtcttctgagtagaatt
aaaacagccagaggatttagcaagttacagcaaccctctggattcctggt
gagttggtggactgcgtgaaatatttaaggttgctgtgtgaaggggatat
catggtggagccttggtaactttttgtagtttgtatgggtttttgattgg
tgaagtctaaaacttgccctgtgcataggcagaagactgggtgtgtccac
gaggtgtgaatgtctcctggctgtgagaagatgaaaggtagagccttggg
agggtcctatatagggagattcatttaaggttatttgactttattgaaat
tcaataacagggggtatctgggtgaggtgtaagagtcttctgatatccag
agtaattaaatcatcaaagcacttagatggatgagtgtggaatgggatct
attggatatgccagtttcatggccctttattagttgttttgagacagatt
gtccagtagaaggaatgagaatctaggactctctctctctcttttttttc
catttatgataatattccttttctaaaaaaataaattttatttattcatt
tttacctagatgttaggctatattttatcccccttctgtttctacccact
gactgttctgtatcccatacctcttctttccttctccaaaaggatgtccc
ctatccccaccccaaccctacaagaccttcccacttccttggatcctcct
gtctcttgagggttaggcgtgtctttgcttgactgtgtccagacccgaag
taccctgct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_41058735_41059249
seq2: B6Ng01-099E24.b_539_1055 (reverse)

seq1  AATAAACAGGCTGAGAAAGAAATTAGGGAAACAACACCCTTCTCAATAGT  50
      ||||||||||||||||||| |||||||| ||||||| ||||||| ||| |
seq2  AATAAACAGGCTGAGAAAG-AATTAGGG-AACAACA-CCTTCTCCATA-T  46

seq1  CACAAATAATATAAAATATCTTGGCATGACT-CTAACTAAGGAAGTGAAA  99
      ||  |||||||| ||||| |||||| ||||| ||||||||||||||||||
seq2  CAACAATAATAT-AAATACCTTGGCCTGACTCCTAACTAAGGAAGTGAAA  95

seq1  GATCTGTATGACAAGAACTTCAAGTCTCTGAAGAAAGAAA-TTAAAGAAG  148
      ||||||||||| |||||| |||||||||| |||||||||| |||||||||
seq2  GATCTGTATGATAAGAACATCAAGTCTCT-AAGAAAGAAATTTAAAGAAG  144

seq1  ATCTCAGAAGATGGAAAGATCTCCCATGCTCATGGATTGGCAGGATCA--  196
      ||| ||||||||||||||| ||||||||||||||||||||||||||||  
seq2  ATCCCAGAAGATGGAAAGAACTCCCATGCTCATGGATTGGCAGGATCAAA  194

seq1  -ACATTGTAAAAATGGCTATCTTGCCAAAAGCAATCTACAGATTCAATGC  245
       | | |  ||||||||||||||||||||||||||||||  || |||||||
seq2  TAGAGTAAAAAAATGGCTATCTTGCCAAAAGCAATCTAAGGACTCAATGC  244

seq1  AATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTTGAAAGAGCAA  295
      ||||||||||||||||||||||||||||||||||||||| ||||| ||||
seq2  AATCCCCATCAAAATTCCAACTCAATTCTTCAACGAATTAGAAAGGGCAA  294

seq1  TCTGCAAATTCATCTGGAATAACAAAAAACCTAGGATAGCAAAAACTCTT  345
      ||||||||||| |||||||||||||||||||||||||||||| || ||| 
seq2  TCTGCAAATTCGTCTGGAATAACAAAAAACCTAGGATAGCAACAATTCTG  344

seq1  CTCAAGGAT--AACAGAACCT--CTGGTGGAATCACCATGCCTGACCTAA  391
      ||||| |||  || | |||||  |  ||||| ||||||||  ||||||||
seq2  CTCAAAGATTAAAAAAAACCTCCCCTGTGGATTCACCATG-GTGACCTAA  393

seq1  AGCTTTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGT  441
      || | |||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGTTGTACTACAGAGCAATTGTGATAAAAACTGCATGGTACTGGTATAGG  443

seq1  GACAGACAAGCAGACCAATGGAATAGAATTGAAGACTCAGAAACGAATCC  491
      |||||||||| ||||||||||||||||| ||||||| ||||||  ||  |
seq2  GACAGACAAGTAGACCAATGGAATAGAACTGAAGACCCAGAAATAAAATC  493

seq1  ACACACCTATGGTCACTTGATCTT  515
      ||||||||||||||||||||||||
seq2  ACACACCTATGGTCACTTGATCTT  517

seq1: chr7_15974258_15975063
seq2: B6Ng01-099E24.g_69_877

seq1  GAATTCCAAGTTTGCAGAGATATATAAGGGCAGGTCTTCTGAGTAGAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAAGTTTGCAGAGATATATAAGGGCAGGTCTTCTGAGTAGAATT  50

seq1  AAAACAGCCAGAGGATTTAGCAAGTTACAGCAACCCTCTGGATTCCTGGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAGCCAGAGGATTTAGCAAGTTACAGCAACCCTCTGGATTCCTGGT  100

seq1  GAGTTGGTGGACTGCGTGAAATATTTAAGGTTGCTGTGTGAAGGGGATAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTGGTGGACTGCGTGAAATATTTAAGGTTGCTGTGTGAAGGGGATAT  150

seq1  CATGGTGGAGCCTTGGTAACTTTTTGTAGTTTGTATGGGTTTTTGATTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTGGAGCCTTGGTAACTTTTTGTAGTTTGTATGGGTTTTTGATTGG  200

seq1  TGAAGTCTAAAACTTGCCCTGTGCATAGGCAGAAGACTGGGTGTGTCCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGTCTAAAACTTGCCCTGTGCATAGGCAGAAGACTGGGTGTGTCCAC  250

seq1  GAGGTGTGAATGTCTCCTGGCTGTGAGAAGATGAAAGGTAGAGCCTTGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGTGAATGTCTCCTGGCTGTGAGAAGATGAAAGGTAGAGCCTTGGG  300

seq1  AGGGTCCTATATAGGGAGATTCATTTAAGGTTATTTGACTTTATTGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTCCTATATAGGGAGATTCATTTAAGGTTATTTGACTTTATTGAAAT  350

seq1  TCAATAACAGGGGGTATCTGGGTGAGGTGTAAGAGTCTTCTGATATCCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATAACAGGGGGTATCTGGGTGAGGTGTAAGAGTCTTCTGATATCCAG  400

seq1  AGTAATTAAATCATCAAAGCACTTAGATGGATGAGTGTGGAATGGGATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAATTAAATCATCAAAGCACTTAGATGGATGAGTGTGGAATGGGATCT  450

seq1  ATTGGATATGCCAGTTTCATGGCCCTTTATTAGTTGTTTTGAGACAGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGATATGCCAGTTTCATGGCCCTTTATTAGTTGTTTTGAGACAGATT  500

seq1  GTCCAGTAGAAGGAATGAGAATCTAGGACTCTCTCTCTCTCTTTTTTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGTAGAAGGAATGAGAATCTAGGACTCTCTCTCTCTCTTTTTTTTC  550

seq1  CATTTATGATAATATTCCTTTTCTAAAAAAATAAATTTTATTTATTCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATGATAATATTCCTTTTCTAAAAAAATAAATTTTATTTATTCATT  600

seq1  TTTACCTAGATGTTAGGCTATATTTTATCCCCCTTCTG-TTCTACCCACT  649
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  TTTACCTAGATGTTAGGCTATATTTTATCCCCCTTCTGTTTCTACCCACT  650

seq1  GACTGTTCTGTATCCCATACCTCTTCTTTCCTTCTCCAAAAGGATGTCCC  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTCTGTATCCCATACCTCTTCTTTCCTTCTCCAAAAGGATGTCCC  700

seq1  CTATCCCCACCCCAACCCTACAAGACCTTCCCAC-TCCCTGGATCCTCCT  748
      |||||||||||||||||||||||||||||||||| ||| |||||||||||
seq2  CTATCCCCACCCCAACCCTACAAGACCTTCCCACTTCCTTGGATCCTCCT  750

seq1  GTCTCTTGAGGGTTAGGCGTGTCTTTGC-TGACTGTGTCCAGACCCGAAG  797
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  GTCTCTTGAGGGTTAGGCGTGTCTTTGCTTGACTGTGTCCAGACCCGAAG  800

seq1  TATCCTGCT  806
      || ||||||
seq2  TACCCTGCT  809