BAC Information

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BAC

Clone NameB6Ng01-099G18
Chromosome3 (Build37)
Map Location 95,359,131 - 95,536,148
singlet/doubletdoublet
Overlap geneCtss, Hormad1, Golph3l, EG668457, Ensa, Mcl1, Adamtsl4
Upstream geneSnx27, LOC100043228, EG668409, Tuft1, LOC100042793, BC021767, Selenbp2, LOC100042801, Cgn, Pogz, Psmb4, Selenbp1, Rfx5, Pik4cb, Zfp687, Psmd4, Pip5k1a, Vps72, Tmod4, Scnm1, Lysmd1, Tnfaip8l2, LOC668436, Sema6c, Gabpb2, Mllt11, Cdc42se1, Gm128, Bnipl, Prune, 4930504E06Rik, Anxa9, Lass2, Setdb1, LOC100043294, 4930558C23Rik, LOC277589, LOC668448, LOC100043305, Arnt, Ctsk, LOC100043312
Downstream geneEcm1, Tars2, 4930535B03Rik, LOC100043327, Prpf3, Mrps21, LOC100042889, Gm129, BC028528, Aph1a, Car14, Anp32e, LOC100042897, LOC100042898, EG668224, Plekho1, EG668222, Vps45, LOC100042908, Otud7b, Mtmr11, Sf3b4, Sv2a, Bola1, Hist2h2ab, Hist2h2ac, Hist2h2be, Hist2h3c2, Hist2h2aa1, Hist2h3c1, LOC100043378, Hist2h4, Hist2h3b, Hist2h2bb, Fcgr1, Pafah1b1-ps1, Terc, BC107364, LOC668500, Hfe2, Txnip, Polr3gl, Ankrd34, 6330549D23Rik, Rbm8a, Pex11b, Itga10, Ankrd35, Pias3, Polr3c, Zfp364
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099G18.bB6Ng01-099G18.g
ACCDH909218DH909219
length1,182949
definitionDH909218|Mus musculus domesticus DNA, BAC clone: B6Ng01-099G18, 5' end.DH909219|Mus musculus domesticus DNA, BAC clone: B6Ng01-099G18, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(95,359,131 - 95,360,316)(95,535,181 - 95,536,148)
sequence
gaattctgagttcgaggccatcctggtctacaaagtgagttccaggacag
ccagggctacacagagaaaaaccaaaaaaaaaaaaaaaaaagaaaagaaa
agaaaaagaaaaaaagtttaggactaacctgggtttcacgtgactcttgt
ctaataaaaaaaattcattacctatgaccctattgtgcaaaaccatttag
agatggagtgttacaaataatatactctttccttgcagaagacatgccta
gaaagcagaaatggatcttatattattgaccttaaatataagtatgtcca
acaatatggaactagtgtgtgtgctgggccacacctgtaatcgcaggctt
ggaaagtcaaagctggagaactgctgaacttgcagccagactgcgtgaca
taaagagagcttgtctaaacaaaatgaaaaacaagcaaaaccaaaacaaa
aagctaaaaagaagcctttaattccagcacttagaaaatagaggcagatg
gatctctgtgacccagcctggtccacatacaaagttccaggccagccagg
gatacatagtcagaccctgtataatatatttatgtaaagctagagacatg
gttcagtggataaaagcactggctgttcttccagagtgcctgggttcaat
tcccagcacctacatgggaactcacaactgtttgtaactccagtttcagg
ggatagacacagacatacatgtaggcaaatcaccaatgcaggtaaaataa
aataaataaataaattgattgattgattaaacatatgtaaatgtaaatgt
tttaggggaagcaaagaggtaaaatatagttttattatattattttgtaa
ttttgctgtttttttctctttttatagttggggccttaactttggtgatc
aaggatacattcggatggcaagaaatataaaaatcactgcggaattgcta
gttattgctcttacccagaaatctaaaccatttcttctttttttaacaag
tcacaaagatggaatatactctacttaattggcttgcaatattccagagg
acccaggtgtggtcgggatcaatggggtagttactgtactactagggtaa
tagccttttttacaccctggttggccaagggtttctataccattggaaca
tgatagccccaaagggctttaaatctgtcatt
gaattccacagatcagttaaagcttgatggtgggcgaagggaggtggaag
gtgatagaagagcattggctgcagtaactccagttccaggtgatccaaca
cccactcacacagacacacatgcaggcagaacaccaatagacataaaata
aatctaaaaacaaaaaggcttcaggggctggagcgatggctgctcccaac
atccacatggtggctcacaactctgtaaatgaagcagggatcggaagccc
tctcctggcctctgctagcaccagatacatacaggcctgcagacaagagt
taatcttgtctttttaaaaaaaaataacaaaaaataaacaagttcagatt
ttgttggaagggattggagaaatggctcagaaagttaagaaaacctaagt
tcagttgacgagccatagaaaggtcacatctgcatgtaactacagatccc
agggccccactgcctccaccagcacacactacacacatggcagacatgtg
gcacacaacaatgaaaatattaaaacaagctgggcggaggtggcacatgc
ctttagtaccagtactcaggaggcagaggccagtgaaacttagtgaactt
gaggccagcctggtctacataatcccaagacagtcagggctacatgagcc
cctgtctcaaaataaatgaaaaaaataaataaaaatggaaaaataaactg
gatagggatggtgcacacctttaatcctggcactcaggaggcagaggcag
ggggatctctgagtttgaggccagcctggtttacagagtgagttccagga
cagccaaggctgcacaaagaaccctgtctcaaaaaacaaatcaaaaaaaa
ataaaaggaaaatgatgatatttttaaacctgactggaaaaaaacatcaa
agtatctgtgaaagggaagccgtagctgtggccctgggaaggggggggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_95359131_95360316
seq2: B6Ng01-099G18.b_49_1230

seq1  GAATTCTGAGTTCGAGGCCATCCTGGTCTACAAAGTGAGTTCCAGGACAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAGTTCGAGGCCATCCTGGTCTACAAAGTGAGTTCCAGGACAG  50

seq1  CCAGGGCTACACAGAGAAAAACCAAAAAAAAAAAAAAAAAAGAAAAGAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCTACACAGAGAAAAACCAAAAAAAAAAAAAAAAAAGAAAAGAAA  100

seq1  AGAAAAAGAAAAAAAGTTTAGGACTAACCTGGGTTTCACGTGACTCTTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAAGAAAAAAAGTTTAGGACTAACCTGGGTTTCACGTGACTCTTGT  150

seq1  CTAATAAAAAAAATTCATTACCTATGACCCTATTGTGCAAAACCATTTAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATAAAAAAAATTCATTACCTATGACCCTATTGTGCAAAACCATTTAG  200

seq1  AGATGGAGTGTTACAAATAATATACTCTTTCCTTGCAGAAGACATGCCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGAGTGTTACAAATAATATACTCTTTCCTTGCAGAAGACATGCCTA  250

seq1  GAAAGCAGAAATGGATCTTATATTATTGACCTTAAATATAAGTATGTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGCAGAAATGGATCTTATATTATTGACCTTAAATATAAGTATGTCCA  300

seq1  ACAATATGGAACTAGTGTGTGTGCTGGGCCACACCTGTAATCGCAGGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATATGGAACTAGTGTGTGTGCTGGGCCACACCTGTAATCGCAGGCTT  350

seq1  GGAAAGTCAAAGCTGGAGAACTGCTGAACTTGCAGCCAGACTGCGTGACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGTCAAAGCTGGAGAACTGCTGAACTTGCAGCCAGACTGCGTGACA  400

seq1  TAAAGAGAGCTTGTCTAAACAAAATGAAAAACAAGCAAAACCAAAACAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAGAGCTTGTCTAAACAAAATGAAAAACAAGCAAAACCAAAACAAA  450

seq1  AAGCTAAAAAGAAGCCTTTAATTCCAGCACTTAGAAAATAGAGGCAGATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAAAAGAAGCCTTTAATTCCAGCACTTAGAAAATAGAGGCAGATG  500

seq1  GATCTCTGTGACCCAGCCTGGTCCACATACAAAGTTCCAGGCCAGCCAGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTCTGTGACCCAGCCTGGTCCACATACAAAGTTCCAGGCCAGCCAGG  550

seq1  GATACATAGTCAGACCCTGTATAATATATTTATGTAAAGCTAGAGACATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACATAGTCAGACCCTGTATAATATATTTATGTAAAGCTAGAGACATG  600

seq1  GTTCAGTGGATAAAAGCACTGGCTGTTCTTCCAGAGTGCCTGGGTTCAAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGTGGATAAAAGCACTGGCTGTTCTTCCAGAGTGCCTGGGTTCAAT  650

seq1  TCCCAGCACCTACATGGGAACTCACAACTGTTTGTAACTCCAGTTTCAGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGCACCTACATGGGAACTCACAACTGTTTGTAACTCCAGTTTCAGG  700

seq1  GGATAGACACAGACATACATGTAGGCAAATCACCAATGCAGGTAAAATAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATAGACACAGACATACATGTAGGCAAATCACCAATGCAGGTAAAATAA  750

seq1  AATAAATAAATAAATTGATTGATTGATTAAACATATGTAAATGTAAATGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATAAATAAATTGATTGATTGATTAAACATATGTAAATGTAAATGT  800

seq1  TTTAGGGGAAGCAAAGAGGTAAAATATAGTTTTATTATATTATTTTGTAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGGGGAAGCAAAGAGGTAAAATATAGTTTTATTATATTATTTTGTAA  850

seq1  TTTTGCTGTTTTTTTCTCTTTTTATAGTTGGGGCCTTAACTTTGGTGATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGCTGTTTTTTTCTCTTTTTATAGTTGGGGCCTTAACTTTGGTGATC  900

seq1  AAGGATACATTCGGATGGCAAGAAATAATAAAAATCACTGCGGAATTGCT  950
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  AAGGATACATTCGGATGGCAAGAAAT-ATAAAAATCACTGCGGAATTGCT  949

seq1  AGTTATTGCTCTTACCCAGAAATCTAAACCATTTCTTCTTTTTCTAACAA  1000
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  AGTTATTGCTCTTACCCAGAAATCTAAACCATTTCTTCTTTTTTTAACAA  999

seq1  GTCACAAAGATGGAATATACTCTAACTTAATTTGCCTGCAATA-TCCAGA  1049
      ||||||||||||||||||||||| |||||||| || ||||||| ||||||
seq2  GTCACAAAGATGGAATATACTCT-ACTTAATTGGCTTGCAATATTCCAGA  1048

seq1  GGAACCAAGTGT-GTCGTGATCAAT-GTGTAGTTACTGTACTAACTA-GG  1096
      ||| ||| |||| |||| ||||||| | |||||||||||||| |||| ||
seq2  GGACCCAGGTGTGGTCGGGATCAATGGGGTAGTTACTGTACT-ACTAGGG  1097

seq1  TTATAGCTATTTTTACACCCT-GTTGTCTAGTGTTTTCTAATAACCATTT  1145
      | |||||  |||||||||||| |||| | |  | ||||||   |||| ||
seq2  TAATAGCCTTTTTTACACCCTGGTTGGCCAAGGGTTTCTA--TACCA-TT  1144

seq1  GTAACATGATAGCCCCAAAGTGCTTAATAAAATCTGTCATT  1186
      | |||||||||||||||||| |||   | ||||||||||||
seq2  GGAACATGATAGCCCCAAAGGGCT---TTAAATCTGTCATT  1182

seq1: chr3_95535181_95536148
seq2: B6Ng01-099G18.g_68_1016 (reverse)

seq1  ACCCCCACCTTCCCAGGGCCACAGCTACAGGCTTTCCCATCTCACCTGAT  50
      |||||| ||||||||||||||||||||| |||||  || | ||||   | 
seq2  ACCCCCCCCTTCCCAGGGCCACAGCTAC-GGCTT--CCCTTTCAC---AG  44

seq1  TTCTTTTGATGTTTTTCTTCCAGTCAGGTTTAAATAATTATTCATTCATT  100
       |  |||||||||||| ||||||||||||||||| |||   ||| |||||
seq2  ATACTTTGATGTTTTT-TTCCAGTCAGGTTTAAA-AAT--ATCA-TCATT  89

seq1  TTCCTTTTTTTTTTTTTTTTTTTTGTTTTGTTTTTTGAGACAGGGTTTCT  150
      ||||      |||| |||||||||| ||||||||||||||||||| ||||
seq2  TTCC------TTTTATTTTTTTTTGATTTGTTTTTTGAGACAGGG-TTCT  132

seq1  TTGTGCAGCCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGCCT  200
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TTGTGCAGCCTTGGCTGTCCTGGAACTCACTCTGTAAACCAGGCTGGCCT  182

seq1  CAAACTCAGAGATCCCCCTGCCTCTGCCTCCTGAGTGCCAGGATTAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTCAGAGATCCCCCTGCCTCTGCCTCCTGAGTGCCAGGATTAAAGG  232

seq1  TGTGCACCATCCCTATCCAGTTTATTTTTCCATTTTTATTTATTTTTTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCACCATCCCTATCCAGTTTATTTTTCCATTTTTATTTATTTTTTTC  282

seq1  ATTTATTTTGAGACAGGGGCTCATGTAGCCCTGACTGTCTTGGGATTATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTATTTTGAGACAGGGGCTCATGTAGCCCTGACTGTCTTGGGATTATG  332

seq1  TAGACCAGGCTGGCCTCAAGTTCACTAAGTTTCACTGGCCTCTGCCTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACCAGGCTGGCCTCAAGTTCACTAAGTTTCACTGGCCTCTGCCTCCT  382

seq1  GAGTACTGGTACTAAAGGCATGTGCCACCTCCGCCCAGCTTGTTTTAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTACTGGTACTAAAGGCATGTGCCACCTCCGCCCAGCTTGTTTTAATA  432

seq1  TTTTCATTGTTGTGTGCCACATGTCTGCCATGTGTGTAGTGTGTGCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCATTGTTGTGTGCCACATGTCTGCCATGTGTGTAGTGTGTGCTGGT  482

seq1  GGAGGCAGTGGGGCCCTGGGATCTGTAGTTACATGCAGATGTGACCTTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCAGTGGGGCCCTGGGATCTGTAGTTACATGCAGATGTGACCTTTC  532

seq1  TATGGCTCGTCAACTGAACTTAGGTTTTCTTAACTTTCTGAGCCATTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGCTCGTCAACTGAACTTAGGTTTTCTTAACTTTCTGAGCCATTTCT  582

seq1  CCAATCCCTTCCAACAAAATCTGAACTTGTTTATTTTTTGTTATTTTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATCCCTTCCAACAAAATCTGAACTTGTTTATTTTTTGTTATTTTTTT  632

seq1  TTAAAAAGACAAGATTAACTCTTGTCTGCAGGCCTGTATGTATCTGGTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGACAAGATTAACTCTTGTCTGCAGGCCTGTATGTATCTGGTGC  682

seq1  TAGCAGAGGCCAGGAGAGGGCTTCCGATCCCTGCTTCATTTACAGAGTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAGGCCAGGAGAGGGCTTCCGATCCCTGCTTCATTTACAGAGTTG  732

seq1  TGAGCCACCATGTTGGATGTTGGGAGCAGCCATCGCTCCAGCCCCTGAAG  800
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TGAGCCACCATG-TGGATGTTGGGAGCAGCCATCGCTCCAGCCCCTGAAG  781

seq1  CCTTTTTGTTTTTAGATTTATTTTATGTCTATTGGTGTTCTGCCTGCATG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTGTTTTTAGATTTATTTTATGTCTATTGGTGTTCTGCCTGCATG  831

seq1  TGTGTCTGTGTGAGTGGGTGTTGGATCACCTGGAACTGGAGTTACTGCAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTGTGTGAGTGGGTGTTGGATCACCTGGAACTGGAGTTACTGCAG  881

seq1  CCAATGCTCTTCTATCACCTTCCACCTCCCTTCGCCCACCATCAAGCTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATGCTCTTCTATCACCTTCCACCTCCCTTCGCCCACCATCAAGCTTT  931

seq1  AACTGATCTGTGGAATTC  968
      ||||||||||||||||||
seq2  AACTGATCTGTGGAATTC  949