MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-099L05
Chromosome	3 (Build37)
Map Location	57,935,021 - 57,936,136
singlet/doublet	singlet
Overlap gene	LOC100040216
Upstream gene	LOC666585, Tm4sf1, LOC383862, Tm4sf4, Wwtr1, Commd2, Gm410, EG623114, Rnf13, LOC675537, Pfn2, EG433594
Downstream gene	4921539H07Rik, Tsc22d2, D3Ucla1, Eif2a, 2810407C02Rik, 4932431H17Rik, LOC666680, LOC100040251, Siah2, LOC100040293, Clrn1, LOC100040416, Gpr171, P2ry14
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC666585 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666585
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 ESTs, 8 Proteins pseudo : _no_value

name	Tm4sf1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:17112 MGI:104678
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC383862 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:383862
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 13 Proteins pseudo : _no_value

name	Tm4sf4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229302 MGI:2385173
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wwtr1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:97064 MGI:1917649
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Commd2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:52245 MGI:1098806
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm410 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242037 MGI:2685256
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG623114 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:623114 MGI:3648319
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 740 ESTs

name	Rnf13 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:24017 MGI:1346341
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC675537 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:675537
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 162 ESTs, 9 Proteins pseudo : _no_value

name	Pfn2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18645 MGI:97550
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG433594 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:433594 MGI:3643179
definition	note : predicted gene, EG433594 pseudo : _no_value

name	LOC100040216 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040216
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	4921539H07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78256 MGI:1925506
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs

name	Tsc22d2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:72033 MGI:1919283
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D3Ucla1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:28146 MGI:92638
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Eif2a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229317 MGI:1098684
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	2810407C02Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69227 MGI:1916477
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4932431H17Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:545527 MGI:3588212
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666680 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666680
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 6 Proteins pseudo : _no_value

name	LOC100040251 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040251
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins

name	Siah2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:20439 MGI:108062
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100040293 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040293
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	Clrn1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229320 MGI:2388124
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	LOC100040416 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100040416
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 1092 ESTs, 10 Proteins

name	Gpr171 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:229323 MGI:2442043
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	P2ry14 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:140795 MGI:2155705
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Tm4sf1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:88900519 GeneID:17112 MGI:104678
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane 4 superfamily member 1 transcript_id : NM_008536.3

name	Tm4sf4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21704061 GeneID:229302 MGI:2385173
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transmembrane 4 superfamily member 4 transcript_id : NM_145539.1

name	Wwtr1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:84370279 GeneID:97064 MGI:1917649
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WW domain containing transcription regulator 1 transcript_id : NM_133784.2

name	Commd2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802801 GeneID:52245 MGI:1098806
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : COMM domain containing 2 transcript_id : NM_175095.4

name	Gm410 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371783 GeneID:242037 MGI:2685256
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gene model 410, (NCBI) transcript_id : NM_001033349.2

name	EG623114 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251159 GeneID:623114 MGI:3648319
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 740 ESTs product : predicted gene, EG623114 transcript_id : XM_887553.3

name	Rnf13 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:86439981 GeneID:24017 MGI:1346341
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ring finger protein 13 transcript_id : NM_011883.2

name	Pfn2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31980876 GeneID:18645 MGI:97550
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : profilin 2 transcript_id : NM_019410.2

name	LOC100040216 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251160 GeneID:100040216
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100040216 transcript_id : XM_001474301.1

name	4921539H07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149251162 GeneID:78256 MGI:1925506
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 3 ESTs product : RIKEN cDNA 4921539H07 gene transcript_id : XM_001474319.1

name	Tsc22d2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124487000 GeneID:72033 MGI:1919283
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : TSC22 domain family 2 transcript_id : NM_001081229.1

name	D3Ucla1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801749 GeneID:28146 MGI:92638
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : DNA segment, Chr 3, University of California at Los Angeles 1 transcript_id : NM_030685.2

name	Eif2a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:54020675 GeneID:229317 MGI:1098684
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : eukaryotic translation initiation factor 2a transcript_id : NM_001005509.1

name	2810407C02Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:143770877 GeneID:69227 MGI:1916477
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2810407C02 gene transcript_id : NM_001040396.2

name	4932431H17Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124486918 GeneID:545527 MGI:3588212
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4932431H17 gene transcript_id : NM_001081262.1

name	LOC100040251 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251165 GeneID:100040251
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 13 Proteins product : similar to U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 1, related sequence 2 transcript_id : XM_001474354.1

name	Siah2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130495 GeneID:20439 MGI:108062
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : seven in absentia 2 transcript_id : NM_009174.3

name	LOC100040293 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251167 GeneID:100040293
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to LOC569648 protein transcript_id : XM_001474446.1

name	Clrn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68533243 GeneID:229320 MGI:2388124
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : clarin 1 transcript_id : NM_153386.2

name	Clrn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68533238 GeneID:229320 MGI:2388124
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : clarin 1 transcript_id : NM_153385.2

name	Clrn1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:68533239 GeneID:229320 MGI:2388124
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : clarin 1 transcript_id : NM_153384.2

name	LOC100040416 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149251176 GeneID:100040416
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 8 mRNAs, 1092 ESTs, 10 Proteins product : similar to ribosomal protein L13 transcript_id : XM_001474690.1

name	Gpr171 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802624 GeneID:229323 MGI:2442043
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : G protein-coupled receptor 171 transcript_id : NM_173398.2

name	P2ry14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56676311 GeneID:140795 MGI:2155705
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : purinergic receptor P2Y, G-protein coupled, 14 transcript_id : NM_001008497.1

name	P2ry14 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:56676314 GeneID:140795 MGI:2155705
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : purinergic receptor P2Y, G-protein coupled, 14 transcript_id : NM_133200.3

name	Tm4sf1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6678762 GeneID:17112 MGI:104678
definition	GO_component : GO:0016020 - membrane [Evidence IEA] codon_start : 1 note : membrane component, surface marker 1; L6 antigen; 12A8 target antigen product : transmembrane 4 superfamily member 1 protein_id : NP_032562.1

name	Tm4sf4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21704062 CCDS:CCDS17361.1 GeneID:229302 MGI:2385173
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] codon_start : 1 exception : mismatches in translation product : transmembrane 4 superfamily member 4 protein_id : NP_663514.1

name	Wwtr1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84370280 GeneID:97064 MGI:1917649
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA]; GO:0005667 - transcription factor complex [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI]; GO:0003713 - transcription coactivator activity [Evidence IGI] [Evidence IMP]; GO:0003714 - transcription corepressor activity [Evidence IGI]; GO:0030528 - transcription regulator activity [Evidence IDA] GO_process : GO:0045599 - negative regulation of fat cell differentiation [Evidence IGI]; GO:0000122 - negative regulation of transcription from RNA polymerase II promoter [Evidence IGI]; GO:0001649 - osteoblast differentiation [Evidence IGI] [Evidence IMP]; GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA] [Evidence IGI]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : transcriptional coactivator with PDZ binding motif product : WW domain containing transcription regulator 1 protein_id : NP_598545.2

name	Commd2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110626003 CCDS:CCDS17362.1 GeneID:52245 MGI:1098806
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : COMM domain containing 2 protein_id : NP_780304.2

name	Gm410 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:85701850 CCDS:CCDS17363.1 GeneID:242037 MGI:2685256
definition	codon_start : 1 product : hypothetical protein LOC242037 protein_id : NP_001028521.1

name	EG623114 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82889586 GeneID:623114 MGI:3648319
definition	codon_start : 1 product : similar to Ribosomal protein S11 protein_id : XP_892646.1

name	Rnf13 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755338 GeneID:24017 MGI:1346341
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006508 - proteolysis [Evidence IEA] codon_start : 1 product : ring finger protein 13 protein_id : NP_036013.1

name	Pfn2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9506971 CCDS:CCDS17364.1 GeneID:18645 MGI:97550
definition	GO_component : GO:0015629 - actin cytoskeleton [Evidence IEA]; GO:0005856 - cytoskeleton [Evidence IEA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007010 - cytoskeleton organization and biogenesis [Evidence IEA] codon_start : 1 note : profilin II product : profilin 2 protein_id : NP_062283.1

name	LOC100040216 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251161 GeneID:100040216
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474351.1

name	4921539H07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149251163 GeneID:78256 MGI:1925506
definition	codon_start : 1 product : hypothetical protein LOC78256 protein_id : XP_001474369.1

name	Tsc22d2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124487001 GeneID:72033 MGI:1919283
definition	GO_function : GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : TSC22 domain family 2 protein_id : NP_001074698.1

name	D3Ucla1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13507609 GeneID:28146 MGI:92638
definition	codon_start : 1 note : ribosome associated membrane protein 4 product : stress-associated endoplasmic reticulum protein 1 protein_id : NP_109610.1

name	Eif2a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:54020676 CCDS:CCDS17367.1 GeneID:229317 MGI:1098684
definition	GO_component : GO:0005737 - cytoplasm [Evidence ISS]; GO:0005850 - eukaryotic translation initiation factor 2 complex [Evidence ISS] GO_function : GO:0043022 - ribosome binding [Evidence ISS]; GO:0003743 - translation initiation factor activity [Evidence IEA] [Evidence ISS]; GO:0000049 - tRNA binding [Evidence ISS] GO_process : GO:0006412 - protein biosynthesis [Evidence IDA]; GO:0006417 - regulation of protein biosynthesis [Evidence ISS]; GO:0042255 - ribosome assembly [Evidence ISS] codon_start : 1 product : eukaryotic translation initiation factor 2A protein_id : NP_001005509.1

name	2810407C02Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:143770878 GeneID:69227 MGI:1916477
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0008430 - selenium binding [Evidence ISS] [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0001514 - selenocysteine incorporation [Evidence ISS] codon_start : 1 product : selenoprotein T protein_id : NP_001035486.2 transl_except : (pos:58389160..58389162,aa:Sec)

name	4932431H17Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124486919 GeneID:545527 MGI:3588212
definition	codon_start : 1 product : hypothetical protein LOC545527 protein_id : NP_001074731.1

name	LOC100040251 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251166 GeneID:100040251
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474404.1

name	Siah2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40254613 CCDS:CCDS17368.1 GeneID:20439 MGI:108062
definition	GO_function : GO:0016874 - ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004842 - ubiquitin-protein ligase activity [Evidence TAS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006915 - apoptosis [Evidence IEA]; GO:0007049 - cell cycle [Evidence IEA]; GO:0006512 - ubiquitin cycle [Evidence IEA] codon_start : 1 product : seven in absentia 2 protein_id : NP_033200.2

name	LOC100040293 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251168 GeneID:100040293
definition	codon_start : 1 product : similar to LOC569648 protein protein_id : XP_001474496.1

name	Clrn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:24415402 CCDS:CCDS17369.1 GeneID:229320 MGI:2388124
definition	codon_start : 1 note : isoform 3 is encoded by transcript variant 3; clarin-1; Usher syndrome 3A homolog product : Usher syndrome 3A homolog isoform 3 protein_id : NP_700435.1

name	Clrn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:24415398 GeneID:229320 MGI:2388124
definition	codon_start : 1 note : isoform 2 is encoded by transcript variant 2; clarin-1; Usher syndrome 3A homolog product : Usher syndrome 3A homolog isoform 2 protein_id : NP_700434.1

name	Clrn1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23510293 GeneID:229320 MGI:2388124
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1; clarin-1; Usher syndrome 3A homolog product : Usher syndrome 3A homolog isoform 1 protein_id : NP_700433.1

name	LOC100040416 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149251177 GeneID:100040416
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474740.1

name	Gpr171 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27734176 CCDS:CCDS17370.1 GeneID:229323 MGI:2442043
definition	GO_function : GO:0045028 - purinergic nucleotide receptor activity, G-protein coupled [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : G protein-coupled receptor 171 protein_id : NP_775574.1

name	P2ry14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:56676312 CCDS:CCDS17371.1 GeneID:140795 MGI:2155705
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0045028 - purinergic nucleotide receptor activity, G-protein coupled [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0045029 - UDP-activated nucleotide receptor activity [Evidence ISS] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : G protein-coupled receptor 105 product : P2Y14 receptor protein_id : NP_001008497.1

name	P2ry14 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:33469033 CCDS:CCDS17371.1 GeneID:140795 MGI:2155705
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA] [Evidence ISS]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004930 - G-protein coupled receptor activity [Evidence IEA]; GO:0045028 - purinergic nucleotide receptor activity, G-protein coupled [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0001584 - rhodopsin-like receptor activity [Evidence IEA]; GO:0004871 - signal transducer activity [Evidence IEA]; GO:0045029 - UDP-activated nucleotide receptor activity [Evidence ISS] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence IEA] [Evidence ISS]; GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 note : G protein-coupled receptor 105 product : P2Y14 receptor protein_id : NP_573463.1

name	LOC666585 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251157 GeneID:666585
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 18 ESTs, 8 Proteins product : hypothetical LOC666585 pseudo : _no_value transcript_id : XR_031577.1

name	LOC383862 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251158 GeneID:383862
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST, 13 Proteins product : similar to fructose-1,6-bisphosphate aldolase A pseudo : _no_value transcript_id : XR_031586.1

name	LOC675537 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251164 GeneID:675537
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 162 ESTs, 9 Proteins product : similar to hCG2028724 pseudo : _no_value transcript_id : XR_031768.1

name	LOC666680 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149251169 GeneID:666680
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 6 Proteins product : similar to Spermine synthase pseudo : _no_value transcript_id : XR_031838.1

clone name	MSMg01-141F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-119I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-380L19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-271B17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291I16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132K14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-065I07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046H14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-061E03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-061D03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-120J15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-504N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-433H21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-136L14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460F22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-374H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-402H18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-411C11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-203B02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-350O22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-374D18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138B11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-294G07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-052A05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-320P17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435M21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542M01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469K20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429E18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340A11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-538N12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435O23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-541E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-458O08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383O21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-423F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-306L08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-429M22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331O03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-407F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-448H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351M22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-138K09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515H12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355F16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-415G14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115A04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-108K15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422J07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375K12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-382I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-164G06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-301H03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-206A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-057B06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-423J04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470G15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453L23
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-540F13
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-066M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413D07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-537B16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111A10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427G03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333L06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-181J02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417F01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-046G21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-196D15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-315I04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-125F24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-547O20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325C11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-418M11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429A17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-437O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-174C18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-151G01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-455I02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-179A13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539E13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-468D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-066I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-484H04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-092P24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-029C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-159K07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-061O06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-240P06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-287N16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-346O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-232I15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273M12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-314G18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-204M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-063C24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102A03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-108O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-030E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-082P23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-290G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249G23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-166G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-217A04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-192I13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-189J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-295M10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098D16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147B21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017K24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-258N04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-116E13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287H18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-109K17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-139F05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-321P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338H08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-006B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-155D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-184K19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-073F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-273L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-068C04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281O10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-218O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-155N19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-120A01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-315I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321B01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-251N13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-182F16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247H24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-223O09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-001H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-017N16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-140G17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-299A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-033F20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-132I08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-284E05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303O08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-117P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317P18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-207I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-253N04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-148B18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-222I18
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-054F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-229C07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-217F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183C13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-238I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275M19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-041M16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247H20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162C15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-175H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190F17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190G17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-057K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-248P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-090J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-237E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-327O08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239I14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-303N05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-270K19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004O19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-313A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-015I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-301J11
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-099L05.b	B6Ng01-099L05.g
ACC	DH909422	DH909423
length	833	1,111
definition	DH909422\|Mus musculus domesticus DNA, BAC clone: B6Ng01-099L05, 5' end.	DH909423\|Mus musculus domesticus DNA, BAC clone: B6Ng01-099L05, 3' end.
singlet/doublet	---	singlet
BLAST hit	no hit data	unique
sequence	gaattcagccaaggtgagataaacaatttaaacaaacctgtagcagacag tgaaattgaaatcgtgaatttaaaatatgccaagtttaaaaaagtttagg cccacatgattcactgatgaaattcccccaaccttcaaagaactaacagc cacttgcactattccataagatagaaaatggaaaaggtcttctaatgaag ctagtcttgctctgatacccaaaccagacaacaatacaacagcaaaatac tttgaaaccaaacttgaaaacatattttaaaaaggcattcattgtgatca agctggcttcattccagtgatgcaaggaacatttcaatatacataaatta atacatgttataaactacaaaaagtctcagagacagaaatcacatggtcg tcacattgacacaaaaacgactttacaaaagctaacatcccattatgtta aaagttctttaaaagctgagaacagaaaggacacatcacaacatagtaaa ggatgtatatgataaacttatagccaacattatactaaatgggggaaagc atttctcctaaaatcaggaacaagacaagggtgtccacaagctctgtgct tactcaatgtatcactgggagaattagatggagcaataaggcaagagaag caaataaaggggatacaaataagaaaagaaaaagctttcagtcacatatg tagcagaggatggtcttgtcggtcatcaatgggaggagaggccttggtcc tgggaaggctcgatgccccagtgtaggggaatgccaggacagggaagcag ggtgtgtgtgggttagtgaggggcgggggggat	gaattccacactcctaagtcccttaccccataaaaacccctagctttcga gcctcgtggccgacatccgttatctcctgtgtgggatacatgtcggaccg gagctccgtaattaaacgtcctcatgtaattacagcaagatgggtcctcg tgtttctttgggtgctctcacactcccgagactagagtaggggtccccga aaggggggtcttacagtgaccccaaccattaaattattttctggttactt cacagctgtaattttgctgcagttatgaactataatataaatatctatgc tctcctgcagttttaggtaaccctgtgaaaaagctgcttgatcctcaaag tggttatgacccacaggttgagaaccactgctcttgaagaacccaagtct tgtttctctgtaaccataaaatgattaatagatttgaccagctgctgtag gaagtcatgagaaagtcgcacatatttttagctcctcagaaagacaagct cttccatctctcaattctcagaattcactgtgctccagtccctcggatgt ctgagaagtcacttaacggttccaaatgcatgtgaaactaaaatacgtgt tatttctaaaaatccttaatatggaaagaaatgagcgcattccttgaaaa aaggaaggttttacctcaccgaggtcagtgttatgctcctggaggcattc atctgttgatcacacagggcccccttctctttgctgaactccaagttatt tcttcggaagctccttccactcgctttgttattaagaccactcgattccc aagcacagagggaaccagtgaagtctggattgttccttcagtctgcttgt cctgttccaatgcacaaattgatggagacactgtacactataattttaag agggaaacagcaggggaagtttagaaagaaggagttctcaggaaaagcta gggaaatcaaataactgggcatattttagttctcacaaaatattgccttt gtccgagttctctcttcagtctgctctacagcaaattaagtttgttgagg aaaaggtgcagtgcatttgatccgaaggaagcctgctttttttgttttgt ttgttttgttt
quality values	Open. Hide. 61 47 41 49 61 49 24 49 61 49 28 61 61 61 61 61 61 61 59 43 61 61 61 61 59 61 39 43 31 24 24 26 30 28 35 45 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 55 61 61 61 61 61 61 61 61 59 61 61 61 61 59 61 55 44 59 61 59 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 59 55 59 61 61 61 55 55 59 59 59 61 61 59 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 55 55 59 61 61 61 59 61 61 61 61 61 59 61 61 59 59 61 61 61 61 59 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 52 61 59 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 53 53 53 42 61 53 61 61 61 53 57 57 53 57 57 57 53 52 57 57 53 53 53 57 57 47 46 47 57 53 47 47 47 53 40 57 53 57 57 57 57 57 53 57 57 57 53 53 57 53 53 53 57 57 57 53 53 57 53 53 53 57 57 57 57 41 32 57 37 37 57 53 53 52 52 57 57 57 53 57 57 53 53 53 52 41 46 28 57 57 53 57 50 57 57 43 46 46 46 52 47 53 57 57 57 57 46 52 36 30 50 43 32 45 57 45 45 57 38 57 46 46 57 38 53 57 57 57 57 37 53 57 57 52 37 32 37 53 52 50 52 38 53 44 53 57 47 38 47 53 53 35 57 24 53 40 23 53 52 31 53 44 53 53 27 40 37 52 35 44 36 43 42 36 42 48 52 57 53 30 22 53 48 29 30 19 44 23 33 40 44 37 44 37 41 40 41 40 57 53 47 41 24 37 17 43 37 37 34 30 32 28 45 47 45 27 29 33 47 30 32 10 46 46 23 46 31 27 44 40 47 27 32 47 32 32 28 24 46 45 43 30 26 29 30 27 46 29 43 46 23 34 29 36 29 43 51 31 46 27 29 35 29 45 38 21 39 39 10 10 14 30 33 33 30 26 22 20 7	Open. Hide. 61 61 43 43 61 61 29 15 37 12 21 28 28 28 21 43 55 55 55 61 61 61 61 55 59 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 59 44 59 30 43 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 59 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 59 59 55 59 61 59 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 59 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 55 55 61 55 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 55 61 55 55 47 50 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 55 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 61 53 61 61 61 61 61 61 61 53 61 61 61 61 61 53 61 61 61 61 61 61 61 61 61 61 47 61 61 61 61 61 61 52 61 61 61 61 61 61 61 61 61 42 47 61 61 52 61 61 61 53 61 61 61 61 52 61 61 53 53 53 47 53 53 52 53 53 34 57 53 57 57 57 53 24 57 57 53 53 57 45 53 57 53 57 57 57 57 46 53 53 57 53 34 57 53 53 57 53 52 57 57 57 57 57 57 57 50 53 52 57 57 53 45 50 47 36 53 53 50 57 53 43 57 57 53 53 53 57 57 57 53 53 47 41 47 38 50 53 52 53 53 47 44 57 47 47 52 53 53 37 33 43 53 52 46 47 47 38 52 46 43 41 38 41 57 37 57 57 57 57 45 35 38 37 50 21 34 13 57 57 52 37 30 28 46 53 40 53 43 43 38 25 57 39 52 50 53 30 53 34 38 31 29 47 40 53 39 53 36 31 53 42 28 52 27 27 50 50 40 25 40 37 31 53 37 50 43 42 40 36 33 39 27 53 36 39 57 53 24 53 53 46 39 46 40 36 48 52 53 57 44 36 36 40 33 37 53 44 42 30 52 33 37 40 53 20 37 29 57 37 33 28 46 35 24 37 33 33 29 37 40 34 27 29 24 29 57 28 41 41 39 28 41 40 53 40 48 31 16 25 44 40 29 39 30 29 17 45 28 47 39 31 27 34 24 45 30 51 38 27 29 29 39 35 32 20 23 45 23 51 51 34 29 31 39 37 29 25 29 29 38 37 25 28 24 32 17 29 19 25 46 17 29 48 34 18 29 29 22 16 23 44 29 29 20 28 27 27 13 29 31 27 30 20 17 10 29 14 29 24 35 25 14 31 29 46 20 23 43 43 25 20 34 31 30 23 24 21 16 28 29 43 16 12 18 14 28 13 15 12 22 15 32 51 51 20 29 27 18 18 17 36 27 27 30 26 28 20 29 29 8 11 32 29 17 20 31 20 23 51 32 24 19 27 51 12 9 5 14 11 13 23 19 29 15 20 28 24 7 17 18 39 41 38 16 15 29 29 15 22 41 29 14 51 23 12 13 28 51 9 28 10 17 22 26 29 51 23 9 21 17 17 9 38 38 19 22 13 28 17 26 21 23 16 28 26 51 51 22 11 13 9 24 22 12 20 16 42 22 28 15 18 26 19 25 7 30 17 17 5 7 11 8 5 6 10 7 17 8 27 10 17 31 20 17 8 8 8 23 17 28 14 36 21 12 23 19 14 10 5 7 6 12 5 6 7 30 6 5 26 34 30 20 6 9 14 29 21 25 5 5 4 4 6 5 34 17 26 8 10 6 12 3 8 9 15 7 4 19 5 11 11 11 4 1 4 31 30 32 24 26 9 10 4 11 5 17 7 4 25 8 6 6 5 9 15 5 1 6 13

Alignment Information

BAC End 1

BAC End 2

seq1: chr3_57935021_57936136
seq2: B6Ng01-099L05.g_68_1178

seq1  GAATTCCACACTCCTAAGTCCCTTACCCCATAAAAACCCCTAGCTTTCGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACTCCTAAGTCCCTTACCCCATAAAAACCCCTAGCTTTCGA  50

seq1  GCCTCGTGGCCGACATCCGTTATCTCCTGTGTGGGATACATGTCGGACCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCGTGGCCGACATCCGTTATCTCCTGTGTGGGATACATGTCGGACCG  100

seq1  GAGCTCCGTAATTAAACGTCCTCATGTAATTACAGCAAGATGGGTCCTCG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCCGTAATTAAACGTCCTCATGTAATTACAGCAAGATGGGTCCTCG  150

seq1  TGTTTCTTTGGGTGCTCTCACACTCCCGAGACTAGAGTAGGGGTCCCCGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTTTGGGTGCTCTCACACTCCCGAGACTAGAGTAGGGGTCCCCGA  200

seq1  AAGGGGGGTCTTACAGTGACCCCAACCATTAAATTATTTTCTGGTTACTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGGGGTCTTACAGTGACCCCAACCATTAAATTATTTTCTGGTTACTT  250

seq1  CACAGCTGTAATTTTGCTGCAGTTATGAACTATAATATAAATATCTATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGCTGTAATTTTGCTGCAGTTATGAACTATAATATAAATATCTATGC  300

seq1  TCTCCTGCAGTTTTAGGTAACCCTGTGAAAAAGCTGCTTGATCCTCAAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTGCAGTTTTAGGTAACCCTGTGAAAAAGCTGCTTGATCCTCAAAG  350

seq1  TGGTTATGACCCACAGGTTGAGAACCACTGCTCTTGAAGAACCCAAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTATGACCCACAGGTTGAGAACCACTGCTCTTGAAGAACCCAAGTCT  400

seq1  TGTTTCTCTGTAACCATAAAATGATTAATAGATTTGACCAGCTGCTGTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCTCTGTAACCATAAAATGATTAATAGATTTGACCAGCTGCTGTAG  450

seq1  GAAGTCATGAGAAAGTCGCACATATTTTTAGCTCCTCAGAAAGACAAGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCATGAGAAAGTCGCACATATTTTTAGCTCCTCAGAAAGACAAGCT  500

seq1  CTTCCATCTCTCAATTCTCAGAATTCACTGTGCTCCAGTCCCTCGGATGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCATCTCTCAATTCTCAGAATTCACTGTGCTCCAGTCCCTCGGATGT  550

seq1  CTGAGAAGTCACTTAACGGTTCCAAATGCATGTGAAACTAAAATACGTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGAAGTCACTTAACGGTTCCAAATGCATGTGAAACTAAAATACGTGT  600

seq1  TATTTCTAAAAATCCTTAATATGGAAAGAAATGAGCGCATTCCTTGAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTAAAAATCCTTAATATGGAAAGAAATGAGCGCATTCCTTGAAAA  650

seq1  AAGGAAGGTTTTACCTCACCGAGGTCAGTGTTATGCTCCTGGAGGCATTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGTTTTACCTCACCGAGGTCAGTGTTATGCTCCTGGAGGCATTC  700

seq1  ATCTGTTGATCACACAGGGCCCCCTTCTCTTTGCTGAACTCCAAGTTATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGTTGATCACACAGGGCCCCCTTCTCTTTGCTGAACTCCAAGTTATT  750

seq1  TCTTCGGAAGCTCCTTCCACTCGCTTTGTTATTAAGACCACTCGATTCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGGAAGCTCCTTCCACTCGCTTTGTTATTAAGACCACTCGATTCCC  800

seq1  AAGCACAGAGGGAACCAGTGAAGTCTGGATTGTTCCTTCAGTCTGCTTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAGAGGGAACCAGTGAAGTCTGGATTGTTCCTTCAGTCTGCTTGT  850

seq1  CCTGTTCCAATGCACAAATTGATGGAGACACTGTACACTATAATTTTAAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTTCCAATGCACAAATTGATGGAGACACTGTACACTATAATTTTAAG  900

seq1  AGGGAAACAGCAGGGGAAGTTTAGAAAGAAGGAGTTCTCAGGAAAAGCTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAACAGCAGGGGAAGTTTAGAAAGAAGGAGTTCTCAGGAAAAGCTA  950

seq1  GGGAAATCAAATTAACTGGGCATA-TTTAGTTCTCACAAAAATATTGCCT  999
      ||||||||||| |||||||||||| |||||||||||| ||||||||||||
seq2  GGGAAATCAAA-TAACTGGGCATATTTTAGTTCTCAC-AAAATATTGCCT  998

seq1  TTGTCCGAGTTCTCTCTCAGGTCTGCTCTACAAGCAAATTAAGTCTG-TG  1048
      |||||||||||||||||   ||||||||||| |||||||||||| || ||
seq2  TTGTCCGAGTTCTCTCTTCAGTCTGCTCTAC-AGCAAATTAAGTTTGTTG  1047

seq1  AAGAAAA-GTGCAGTGGAATTTGATTCCAGAGGAAGCTTGGTTTTTTTTG  1097
      | ||||| ||||||| | |||||| |||  ||||||| | | ||||||||
seq2  AGGAAAAGGTGCAGT-GCATTTGA-TCCGAAGGAAGCCT-GCTTTTTTTG  1094

seq1  TTTTGTTTTGTTTTTGTTT  1116
      ||||||||   ||||||||
seq2  TTTTGTTT--GTTTTGTTT  1111

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information