BAC Information

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BAC

Clone NameB6Ng01-099M23
Chromosome3 (Build37)
Map Location 12,867,976 - 12,869,102
singlet/doubletsinglet
Overlap genenone
Upstream geneEG621965, LOC100039798, EG668033
Downstream geneLOC668037, LOC100039823, LOC100039861, 0710005M24Rik, LOC100041679, LOC100041667, LOC100039882
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099M23.bB6Ng01-099M23.g
ACCDH909501DH909502
length1,1041,174
definitionDH909501|Mus musculus domesticus DNA, BAC clone: B6Ng01-099M23, 5' end.DH909502|Mus musculus domesticus DNA, BAC clone: B6Ng01-099M23, 3' end.
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccttttgtgtcctttagctcaggtgatttctatcttatctctggt
ctcaggtttcatgaatgcatcttatcatactcatagtttacaatagagtt
aaaaggtatatgcaacaaatatataaaatatgtgctaatacttttttata
aaattaaaaacattaggaatatccttctgatttcagaagaaacaagtata
aggataatttcacatagaaaagatgtatttgagtaaacacaattacaaag
aaatgcacgaagatgagcttgcataattatctctaccatgaagaaattat
cctccatgacaattctgcttgcattgaattgattacatttgtgtttcatg
gtcctgacaacatgtacaagatattttagatgaagaagtagttttgatca
aactgtgtcactgcatgttttaatacttcaaaatatgagttccatctgaa
gttgttggtgtttcaaacatttatgatgtcctagattttttgaagcttga
gtgtgtaatcaagacataaataaactttttgtgattttccttaatgttgg
tggatgaattaaatttatttctactgttttcatctgctcttgtctttaat
attggtttatatattttgttgttttgctttttccccaacacacttgattt
atggttaatgagcacttatatatggatgtgtagtggtcagaaaacacctt
cattcacaagggaagagtgacatattccttcctaagtgaatcttatctca
ttgcactctgtatcaaattgcaaaaatcctgcagatagattcaatgtttt
ctccaccagcagtttaatacttgggtctatggtaaagtcttaatcaaatc
gctagattccaaaagtaagttttccttcccccagactccactgcttaatg
gagtttcagcaatctattttttctcttcttttttatttgtgatcaagaga
ccagattacttagaggagaatatccctttttggcaagtctgcctttggga
gaaagctttctcatagtctgattactccactcactccaggtgttttttct
gttcatgagtgttaattcttttgaggagagaggacaataaactcaatagt
cgta
gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
ggagccaacatcaaagtaaatggagagaagctggaagcaatcccactaaa
atcagggactagataaggctgcccactttctccctaccttttcaacatag
tacttgaagtattatattatccagagcaattcgacaacaaaaggagatca
aggggatacaaattggaaaggaggaagtcaaaatatcactttttgcagat
gatatgatagtatatacaagtgaccctaaaaattccaccagagaactcct
aaacctgataaacagcttcggtgaagtagctggatataaaattaactcaa
acaagtcaatggcctttctctacaaaaagaataaacaggctgagaaagaa
attagggaaacaacacccttctcaatagtcacaaataatataaaatatct
cggagtgactctaacgaaggaagtgaaagatctgtatgataaaaacttca
agtctctgaagaaagaaattaaagaagatctcagaagatggaaagatctc
ccatgctcatagattggcaggatcaacattgtaaaaatggctatcttgcc
aaaagcaatctacagattcaatgcaatccccatcaaaattccaactcaat
tcttcaacgaattagaaggagcaatttgcaaattcatctggaataacaaa
aaacctaggatagcaaaaactcttctcaaggataaaagaacctctggtgg
aatcaccatgcctgacctaaagctttactacagagcaattgtggtaaaaa
ctgcatggtactggtatagagaaagacaagtagaccaatggaatagaatt
gaagacccagaaatgaacccacacacctatggtcacttaatcttcgacaa
gggagctaaaaccatccagtggaagaaagacagcattttcaacaattggt
gctggcacaactgggttgtatcatgtagaagatgcgaatcgatcatactt
atctcttgtactaggtcaaatctaatggatcaagactcaaataaaacaga
gaccctgaactatagaggaaaagtggggaaggctgaaaatggttacagga
acttctgaacagaaacgcatgctgcgtagatcgaatgacattggactaag
gacctacagatctctgcagagcga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_12867976_12869102
seq2: B6Ng01-099M23.b_48_1151

seq1  GAATTCCTTTTGTGTCCTTTAGCTCAGGTGATTTCTATCTTATCTCTGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTTGTGTCCTTTAGCTCAGGTGATTTCTATCTTATCTCTGGT  50

seq1  CTCAGGTTTCATGAATGCATCTTATCATACTCATAGTTTACAATAGAGTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGTTTCATGAATGCATCTTATCATACTCATAGTTTACAATAGAGTT  100

seq1  AAAAGGTATATGCAACAAATATATAAAATATGTGCTAATACTTTTTTATA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGGTATATGCAACAAATATATAAAATATGTGCTAATACTTTTTTATA  150

seq1  AAATTAAAAACATTAGGAATATCCTTCTGATTTCAGAAGAAACAAGTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAAAAACATTAGGAATATCCTTCTGATTTCAGAAGAAACAAGTATA  200

seq1  AGGATAATTTCACATAGAAAAGATGTATTTGAGTAAACACAATTACAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATAATTTCACATAGAAAAGATGTATTTGAGTAAACACAATTACAAAG  250

seq1  AAATGCACGAAGATGAGCTTGCATAATTATCTCTACCATGAAGAAATTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGCACGAAGATGAGCTTGCATAATTATCTCTACCATGAAGAAATTAT  300

seq1  CCTCCATGACAATTCTGCTTGCATTGAATTGATTACATTTGTGTTTCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCATGACAATTCTGCTTGCATTGAATTGATTACATTTGTGTTTCATG  350

seq1  GTCCTGACAACATGTACAAGATATTTTAGATGAAGAAGTAGTTTTGATCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTGACAACATGTACAAGATATTTTAGATGAAGAAGTAGTTTTGATCA  400

seq1  AACTGTGTCACTGCATGTTTTAATACTTCAAAATATGAGTTCCATCTGAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTGTCACTGCATGTTTTAATACTTCAAAATATGAGTTCCATCTGAA  450

seq1  GTTGTTGGTGTTTCAAACATTTATGATGTCCTAGATTTTTTGAAGCTTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTTGGTGTTTCAAACATTTATGATGTCCTAGATTTTTTGAAGCTTGA  500

seq1  GTGTGTAATCAAGACATAAATAAACTTTTTGTGATTTTCCTTAATGTTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTAATCAAGACATAAATAAACTTTTTGTGATTTTCCTTAATGTTGG  550

seq1  TGGATGAATTAAATTTATTTCTACTGTTTTCATCTGCTCTTGTCTTTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATGAATTAAATTTATTTCTACTGTTTTCATCTGCTCTTGTCTTTAAT  600

seq1  ATTGGTTTATATATTTTGTTGTTTTGCTTTTTCCCCAACACACTTGATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTTTATATATTTTGTTGTTTTGCTTTTTCCCCAACACACTTGATTT  650

seq1  ATGGTTAATGAGCACTTATATATGGATGTGTAGTGGTCAGAAAACACCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTTAATGAGCACTTATATATGGATGTGTAGTGGTCAGAAAACACCTT  700

seq1  CATTCACAAGGGAAGAGTGACATATTCCTTCCTAAGTGAATCTTATCTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCACAAGGGAAGAGTGACATATTCCTTCCTAAGTGAATCTTATCTCA  750

seq1  TTGCACTCTGTATCAAATTGCAAAAATCCTGCAGATAGATTCAATGTTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCACTCTGTATCAAATTGCAAAAATCCTGCAGATAGATTCAATGTTTT  800

seq1  CTCCACCAGCAGTTTAATACTTGGGTCTATGGTAAAGTCTTAATCAAATC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCACCAGCAGTTTAATACTTGGGTCTATGGTAAAGTCTTAATCAAATC  850

seq1  GCTAGATTCCAAAAGTAAGTTTTCCTTCCCCCAGACTCCACTGCTTAATG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGATTCCAAAAGTAAGTTTTCCTTCCCCCAGACTCCACTGCTTAATG  900

seq1  GAGTTTCAGGCAATCTATTTTTTCTCTTCTTTTTTTATTTGTGAATCAAA  950
      |||||||| |||||||||||||||||||| ||||||||||||| ||| ||
seq2  GAGTTTCA-GCAATCTATTTTTTCTCTTC-TTTTTTATTTGTG-ATC-AA  946

seq1  GAGACCAGATTAACTTAGAGGAAGAAATATCCCTTTTTGGCAAAGTCCTG  1000
      ||||||||||| ||||||||||   |||||||||||||||| |||| |||
seq2  GAGACCAGATT-ACTTAGAGGA--GAATATCCCTTTTTGGC-AAGT-CTG  991

seq1  CCTTTTGGGAAGAAAGCTTTCTCCATAGTCCTTGAATTTACT-CACTCAA  1049
      |||||  || |||||||||||| |||||||  |||  ||||| ||||| |
seq2  CCTTT--GGGAGAAAGCTTTCT-CATAGTC--TGA--TTACTCCACTC-A  1033

seq1  CTCCA-GTGTTTTTTCCTGGTTCATGAGGTGTTATATCTTTTAGAGAAGA  1098
      ||||| ||||||||||   |||||||| ||||||  |||||| ||| || 
seq2  CTCCAGGTGTTTTTTC--TGTTCATGA-GTGTTAATTCTTTT-GAGGAG-  1078

seq1  AGAGGACAAATAAAACTCAAATAGTCGTA  1127
      |||||||||   |||||| ||||||||||
seq2  AGAGGACAA--TAAACTC-AATAGTCGTA  1104