BAC Information

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BAC

Clone NameB6Ng01-099M24
Chromosome3 (Build37)
Map Location 112,140,658 - 112,141,151
singlet/doubletsinglet
Overlap geneLOC668717
Upstream geneLOC625585, EG229746
Downstream geneUtp14B-ps, EG433643, OTTMUSG00000022462, LOC668723, Amy2-2, Amy2-1, LOC100043684, LOC100043686
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-099M24.g
ACCDH909503
length1,105
definitionDH909503|Mus musculus domesticus DNA, BAC clone: B6Ng01-099M24, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcggatgaagaattcctgtcgtggaaaaaatatatgatatatgt
tcagcttcttcaaattttttgctaatggtgaccatgaaagtgacaacatt
gaaaatttcaatgttgggtgtgaaacatcaagtcctcttgtgtttatata
cgcttttaagagtgtttcttcttgtttcctctttcttttcgccccgggtg
gaggagtgagaggagagggaaggagggagaggaattaaaagaaagcaaag
ctgaatgatatacagtgcgagaaaccgacatttcctctgcggggctggta
tttttaatatgtggtggttttcccaaagaacacatgctccactatgttca
tagcagccttgtttataatagccagaagctggaaagaacccagatgcccc
tcaacagaggaatggatacagaaaatgtggtacgacaagtcccttccgct
cgactcgagccccgggctaccttgccagcagagtcttgcccaacacccgc
aagggcccacacgggactccccacgggatcctaagacctctggtgagtgg
aacatagcgcctgccccaatccaatcgcgcggaacctgagactgctgtac
atagggaagcaggctacccaggcttgatctggggcacaaaccccttctgc
tcgactcgagccccgggctaccttgccagcagagtcttgcccaacacccg
caagggcccacacgggaccccccacgggatcctaagacctctggtgagtg
gaacacagcgcctgccccaaaccaatcacacggaacctgagtctgcggta
cataggggaagcaggctacccgggcctgatctggggcacaagtcccttcc
gctcgactcgagccccgggctaccttgccagcagagtcttgcccaacacc
tgcaaggcccacacgggactccccacgggatcctaagacctctggtgagt
ggaacacagcgctgccccaattcaatcgcgcgacctgagactgctgtcat
taggagcagctaccgggcttgatcttgggcacaacccttccgcctcactc
gagcccggctactggcagcggatcgcctgacccgcaaggtcccacaggaa
ttcca
quality valuesOpen.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_112140658_112141151
seq2: B6Ng01-099M24.g_507_1171 (reverse)

seq1  --------------------------------------------------  0
                                                        
seq2  TGGAATTCCTGTGGGACCTTGCGGGTCAGGCGATCCGCTGCCAGTAGCCG  50

seq1  --------------------------------------------------  0
                                                        
seq2  GGCTCGAGTGAGGCGGAAGGGTTGTGCCCAAGATCAAGCCCGGTAGCTGC  100

seq1  --------------------------------------------------  0
                                                        
seq2  TCCTAATGACAGCAGTCTCAGGTCGCGCGATTGAATTGGGGCAGCGCTGT  150

seq1  --------------------------------TGGAATCCTGTGTGGGCC  18
                                       ||| ||| ||||||| |
seq2  GTTCCACTCACCAGAGGTCTTAGGATCCCGTGGGGAGTCCCGTGTGGG-C  199

seq1  CTTGCGGGTGTCAGGC--GACTCAGCTGGCAAGGTAG-CCGGGGCTCGAG  65
      ||||| |||||  |||  ||||| ||||||||||||| ||||||||||||
seq2  CTTGCAGGTGTTGGGCAAGACTCTGCTGGCAAGGTAGCCCGGGGCTCGAG  249

seq1  TGGAGTGGAAGGGGTTTGTGCCCCAGATCAAGCCCGGGTAGCCTGCTT-C  114
      | ||| |||||||  ||||||||||||||| ||||||||||||||||| |
seq2  TCGAGCGGAAGGGACTTGTGCCCCAGATCAGGCCCGGGTAGCCTGCTTCC  299

seq1  CCTATGTACCGCAGTCTCAAGTTCCATGCGATTGGATTGGGGTAGGCGCT  164
      |||||||||||||| |||| ||||| || |||||| |||||| |||||||
seq2  CCTATGTACCGCAGACTCAGGTTCCGTGTGATTGGTTTGGGGCAGGCGCT  349

seq1  GTGTTCCACTCACCAGAGGTCTTAGGGTCCCGTGGGGAGTCCCGTGTGGG  214
      |||||||||||||||||||||||||| |||||||||| ||||||||||||
seq2  GTGTTCCACTCACCAGAGGTCTTAGGATCCCGTGGGGGGTCCCGTGTGGG  399

seq1  CCCTTGCGGGTGTTGGGCAAGACTCTGCTGTCAAGGTAGCCCGGGGCTCG  264
      |||||||||||||||||||||||||||||| |||||||||||||||    
seq2  CCCTTGCGGGTGTTGGGCAAGACTCTGCTGGCAAGGTAGCCCGGGG----  445

seq1  AGTCTCGAGTCGAGCGGAAGGGACTTGTGCCCCAGATCAGGCCCGGGTAG  314
         |||||||||||| ||||||  ||||||||||||||| ||| ||||||
seq2  ---CTCGAGTCGAGCAGAAGGGGTTTGTGCCCCAGATCAAGCCTGGGTAG  492

seq1  CCTGCTTCCCTATGTACCGCAGTCTCAAGTTCCGCGCGATTGGATTGGGG  364
      ||||||||||||||||| ||||||||| ||||||||||||||||||||||
seq2  CCTGCTTCCCTATGTACAGCAGTCTCAGGTTCCGCGCGATTGGATTGGGG  542

seq1  CAGGCACTGTGATCCACTCACCAGAGGTCTTAGGGTCCCGTGGGGAGTCC  414
      ||||| || || |||||||||||||||||||||| |||||||||||||||
seq2  CAGGCGCTATGTTCCACTCACCAGAGGTCTTAGGATCCCGTGGGGAGTCC  592

seq1  CGTGTGGACCCTTGCGGGTGTTGGGCAAGACTCTGCTGGCAAGGTAGCCC  464
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTGGGCCCTTGCGGGTGTTGGGCAAGACTCTGCTGGCAAGGTAGCCC  642

seq1  GGGGCTCGAGTCTCGAGTCGAGCGGAAGGG  494
      ||||       |||||||||||||||||||
seq2  GGGG-------CTCGAGTCGAGCGGAAGGG  665