BAC Information

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BAC

Clone NameB6Ng01-100C20
Chromosome3 (Build37)
Map Location 46,000,148 - 46,001,215
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039296, Pcdh10, LOC100039282, LOC433580, LOC671801
Downstream geneEG241989, LOC545517, LOC383849
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100C20.bB6Ng01-100C20.g
ACCDH909750DH909751
length1,0011,064
definitionDH909750|Mus musculus domesticus DNA, BAC clone: B6Ng01-100C20, 5' end.DH909751|Mus musculus domesticus DNA, BAC clone: B6Ng01-100C20, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctctactaaaaccatctggtcctgggttttttgtttttttttttt
ttttaattggaagacatttaataactgcttctatttctttaggggttatg
ggaatgttaaaaagttttttctgatcctgatgtaatttaggtatttggta
cctgtctagaaaattattcattttatctaggtataccagttttgttgaat
ataggcttttgtaagaggatctgatgatttttttaattacctcggtttat
gttgttatatcacccttttcatttctgattttgttagtttggatattgtc
tctgtgacctctgattagtctgcctaaagatttatctatcttatttattt
tctcaaataacctgctactggttttgttgattcattggatagttcttttg
gtttctacttggttgatttcagcagtgaattggataatttcctgctgtct
actgctcttgggtgtatttggttctttttgttctagagctttgaggtgtg
ctgtaaaaatgctagtggaagctctcttcagtttgttttggaagcactca
gtgctatgagttctttgattagcactgcttacattttgtcatcagtttgt
gtgtgttgtgcctttattttcattaaatattaaaaagtcattaatttctc
ccttgaagaagttatcattgagtagagtgttgttcaccttccatgtgtac
atgaggtttctattggttttgttgttattgaagacctgcctttgtcagta
gtgatctgataggatgcataggattatttcaatgttcttgtatccattga
gtactgattaatgactaattatatggtcagttttggagaaatttaattag
gtgctgagaggaaggtatatttctttgtttagatcaatgcactatagatt
tctgttaaaaaacatttgttatacttttttgtttcaccctgtctatgttt
agtctatttcagtgatgaggaccactgatgagggtagggtggtggcatct
t
gaattcattagatgggaattaaaaccattatttaatgaggtaactgataa
agtaacttagcaggagtaggttactgcaatttataagccaactgcttcag
tataaaagaatccatgaaacagtgagtaagttatccatatgtgacccact
gccctgtttgattgttgtgaaataagaattctgggctgaggaacctcaat
aatgtccactaccacagcatcggaaagatggaaattaacttcaggaatac
aagttccagcagtgagaccttcatgtagggaaggtaaattcatgtttata
actgtctgttcaagcgaaagaaacagtttgctatatgacagaatgttgcc
aatcctaacagattctacagattctgtggatgatccattgggagttaggg
acacttagaaaactcagaattaacatcaaccactgtcagaatggacatat
aaatataagtatagcaagcttggccctgaggattataaatccatgtttca
tagatcatttcctaccttcagtctggtaaagcacacacacacacacacac
acacacacacacacacagagagagagagacatgtatgtatgtatgtatgt
atgtataataaatcactgggggagggattagaaagttcagaagctaagca
tcattacaaatcttgggggatgattttattatctgctgatcatttacata
aaggagaaccatattcatcttacttcccaattcaaaagactgtctacaga
aaagactcaaaatgtctacaatgtaaatgctcacagctatccattggatg
gagcacagggtccccagtgaaggagatagagaaaggacccaaggagctga
aggggtttgcagccccataggaagaacaaaatatgaactagcagtacccc
agagctccatggactaaaccaccaaccaaagaaaactcactgtgaactca
tggctctagctgcatatgtagcagaggatggcctagtgggtcatcaatgg
gaggagagcccattggccctgtgatggtttgtggttcagaataaaggaat
gccagggacgagaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_46000148_46001215
seq2: B6Ng01-100C20.g_67_1130

seq1  GAATTCATTAGATGGGAATTAAAACCATTATTTAATGAGGTAACTGATAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATTAGATGGGAATTAAAACCATTATTTAATGAGGTAACTGATAA  50

seq1  AGTAACTTAGCAGGAGTAGGTTACTGCAATTTATAAGCCAACTGCTTCAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAACTTAGCAGGAGTAGGTTACTGCAATTTATAAGCCAACTGCTTCAG  100

seq1  TATAAAAGAATCCATGAAACAGTGAGTAAGTTATCCATATGTGACCCACT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAAAGAATCCATGAAACAGTGAGTAAGTTATCCATATGTGACCCACT  150

seq1  GCCCTGTTTGATTGTTGTGAAATAAGAATTCTGGGCTGAGGAACCTCAAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGTTTGATTGTTGTGAAATAAGAATTCTGGGCTGAGGAACCTCAAT  200

seq1  AATGTCCACTACCACAGCATCGGAAAGATGGAAATTAACTTCAGGAATAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTCCACTACCACAGCATCGGAAAGATGGAAATTAACTTCAGGAATAC  250

seq1  AAGTTCCAGCAGTGAGACCTTCATGTAGGGAAGGTAAATTCATGTTTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCCAGCAGTGAGACCTTCATGTAGGGAAGGTAAATTCATGTTTATA  300

seq1  ACTGTCTGTTCAAGCGAAAGAAACAGTTTGCTATATGACAGAATGTTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCTGTTCAAGCGAAAGAAACAGTTTGCTATATGACAGAATGTTGCC  350

seq1  AATCCTAACAGATTCTACAGATTCTGTGGATGATCCATTGGGAGTTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTAACAGATTCTACAGATTCTGTGGATGATCCATTGGGAGTTAGGG  400

seq1  ACACTTAGAAAACTCAGAATTAACATCAACCACTGTCAGAATGGACATAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTAGAAAACTCAGAATTAACATCAACCACTGTCAGAATGGACATAT  450

seq1  AAATATAAGTATAGCAAGCTTGGCCCTGAGGATTATAAATCCATGTTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAAGTATAGCAAGCTTGGCCCTGAGGATTATAAATCCATGTTTCA  500

seq1  TAGATCATTTCCTACCTTCAGTCTGGTAAAGCACACACACACACACACAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCATTTCCTACCTTCAGTCTGGTAAAGCACACACACACACACACAC  550

seq1  ACACACACACACACACAGAGAGAGAGAGACATGTATGTATGTATGTATGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACAGAGAGAGAGAGACATGTATGTATGTATGTATGT  600

seq1  ATGTATAATAAATCACTGGGGGAGGGATTAGAAAGTTCAGAAGCTAAGCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTATAATAAATCACTGGGGGAGGGATTAGAAAGTTCAGAAGCTAAGCA  650

seq1  TCATTACAAATCTTGGGGGATGATTTTATTATCTGCTGATCATTTACATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTACAAATCTTGGGGGATGATTTTATTATCTGCTGATCATTTACATA  700

seq1  AAGGAGAACCATATTCATCTTACTTCCCAATTCAAAAGACTGTCTACAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAGAACCATATTCATCTTACTTCCCAATTCAAAAGACTGTCTACAGA  750

seq1  AAAGACTCAAAATGTCTACAATGTAAATGCTCACAGCTATCCATTGGATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACTCAAAATGTCTACAATGTAAATGCTCACAGCTATCCATTGGATG  800

seq1  GAGCACAGGGTCCCCAGTGAAGGAGATAGAGAAAGGACCCAAGGAGCTGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCACAGGGTCCCCAGTGAAGGAGATAGAGAAAGGACCCAAGGAGCTGA  850

seq1  AGGGGTTTGCAGCCCCATAGGAAGAACAAAAATATGAACTAAGCAGTACC  900
      ||||||||||||||||||||||||||| |||||||||||| ||||||| |
seq2  AGGGGTTTGCAGCCCCATAGGAAGAAC-AAAATATGAACT-AGCAGTA-C  897

seq1  CCCAGAGCTCCATGGACTAAACCACCAACCAAAGAAAACTCACTGTGAAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  CCCAGAGCTCCATGGACTAAACCACCAACCAAAGAAAACTCACTGTG-AA  946

seq1  CTCATGGCTCTAGCTGCATATGTAGCAGAGGATGGCCTAGTTGGTCATCA  1000
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  CTCATGGCTCTAGCTGCATATGTAGCAGAGGATGGCCTAGTGGGTCATCA  996

seq1  ATGGGAGGAGAGCCCATTGGCCCTGTGATGGTTCTGTGTTCCAGAATAGA  1050
      ||||||||||||||||||||||||||||||||| |||| | ||||||| |
seq2  ATGGGAGGAGAGCCCATTGGCCCTGTGATGGTT-TGTGGTTCAGAATAAA  1045

seq1  GAAATGCCAGGGAC-AGAA  1068
      | |||||||||||| ||||
seq2  GGAATGCCAGGGACGAGAA  1064