BAC Information

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BAC

Clone NameB6Ng01-100D06
Chromosome3 (Build37)
Map Location 100,721,916 - 100,882,759
singlet/doubletdoublet
Overlap geneTrim45, Ttf2, Igsf2, Ptgfrn
Upstream geneSpag17, LOC623045, Wdr3, Gdap2, LOC195514, 4930431B09Rik, OTTMUSG00000007026, Man1a2, Vtcn1
Downstream geneLOC668578, LOC668583, LOC669017, Cd2, LOC100043490, Igsf3, LOC100043032, Atp1a1, LOC100043036, BC037703, Slc22a15, Nhlh2, LOC100043047, Casq2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100D06.bB6Ng01-100D06.g
ACCDH909768DH909769
length9281,150
definitionDH909768|Mus musculus domesticus DNA, BAC clone: B6Ng01-100D06, 5' end.DH909769|Mus musculus domesticus DNA, BAC clone: B6Ng01-100D06, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,721,916 - 100,722,844)(100,881,612 - 100,882,759)
sequence
ggcagctagaaaaatctcaaagcaccccacccagccacagagggcctttt
cctccagcgagtctctaccaacgaaaagttgacaatcctccccacacaac
accaccaactaggactgagtggtcagacaatgaagctatgggagacactc
cattcaagccacactggtcttctccagaaccttagctaaaaagaagagga
aagggcggctgaggagcacagacagaaggtgaaactgaagtgtgagtgtg
agaaagattcatagttaggaggggatgaggcacaagttgggatgggattg
gacatttagactagaggtgtcaggagcaatcaaggcggaaagggatagtg
actgatggggacagatatgacggtggtgaaagggtaagtccaccagagcc
tttctatctgctggacggatcacacagcatcagagccagccttcctgacc
tcccgatagagcatcctcccttcctggctctcctgccctcagtactgttc
ctgccttgggcattaggagtgggctgaaatctttagctactgtatggacc
tggccacttccagaagttctgctcttctgcccctgtggcttttgtacttc
cctgtgactatttgatgtctggagtccccagtaggagaagcgatgcgtaa
tcatggagcaagaaatgaatcagctctgacaaaggaatacagttagtaca
tcttagccatatggtctcaacccatatcgtgtatccacaaaattcgtggt
tgaacatggtcttgttaagttttctcattatttgagataaccagtttctg
cctccctattaacatgtctttatcaaatgccttactatgcaggcactggg
ttggttgccaatgggttacttttcttcttcttctcttcttcttcttcttc
ttcttcttcttcttcttcttcttctact
gaattcagtggtagagtgatcacctctatatgcatggtcctagttgactt
gtagagccggggacgaagaaatcctgacttttgaaaagatttcccataag
acacttttgcactgagttaaacagtacaacggacacccccctttcaggtc
agatacactctagtgatttattgtgagaaggcaaaggatgacacaagagt
ccccagccctccccccatctcctggcttcttgactagtctttgagggcca
gagaagcagggaagcttttcttggctcaggagagcaggatgcatgagaga
ggctggctggctgcccaggtggagactctggcaggagctagaggtggtcc
agcatctgtctggccttcaccttcatggttcttaaatctgtccatccttt
tctcctcagtgaggagctggccttgagaatgaagccatgctagctgtcct
cacatactgaggtgtgtcctagaagggccactatattcattttgtagaag
agatgggcccatgggaggtggtgttctagaggagaaccggtttctgttat
ctggagtaacccctttctgagtgtgtgatcaaggaaaccgccaaggagac
gatggattgtgatgcttgaaggtccacatatgtagctcctgataaacttg
gcagattttcccagcctttggtagacagcctgactaccagatcaccagta
tctgtcaccgtccattctgagcccacccctttcctagactgttgaagtgg
tggctttttccagaaggtgctaagagttagaaagcagaacccccagtaat
tcttgtccccttcctgtgctgtggctatgctctaccaggacgtgagccac
aggcacctcctgccatccatcgtctcatgagccacaggcaccttcttgcc
attcatcgtctctccctggggatcttgactcttggcagctcccgttgtct
tttaatgcaggttccctcctccagctccgttgttctaacagaggattgcc
ttggcagttatactggccactgacctggccactgctggcctccctattga
ctctatgaagtggggtacagtcattatccccctttctagggaacggagcc
cgaaagggacaatataggctcatcatgggcacgggagcacccacaaaccc

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_100721916_100722844
seq2: B6Ng01-100D06.b_54_981

seq1  GGCAGCTAGAAAAATCTCAAAGCACCCCACCCAGCCACAGAGGGCCTTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTAGAAAAATCTCAAAGCACCCCACCCAGCCACAGAGGGCCTTTT  50

seq1  CCTCCAGCGAGTCTCTACCAACGAAAAGTTGACAATCCTCCCCACACAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCAGCGAGTCTCTACCAACGAAAAGTTGACAATCCTCCCCACACAAC  100

seq1  ACCACCAACTAGGACTGAGTGGTCAGACAATGAAGCTATGGGAGACACTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCAACTAGGACTGAGTGGTCAGACAATGAAGCTATGGGAGACACTC  150

seq1  CATTCAAGCCACACTGGTCTTCTCCAGAACCTTAGCTAAAAAGAAGAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCAAGCCACACTGGTCTTCTCCAGAACCTTAGCTAAAAAGAAGAGGA  200

seq1  AAGGGCGGCTGAGGAGCACAGACAGAAGGTGAAACTGAAGTGTGAGTGTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCGGCTGAGGAGCACAGACAGAAGGTGAAACTGAAGTGTGAGTGTG  250

seq1  AGAAAGATTCATAGTTAGGAGGGGATGAGGCACAAGTTGGGATGGGATTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATTCATAGTTAGGAGGGGATGAGGCACAAGTTGGGATGGGATTG  300

seq1  GACATTTAGACTAGAGGTGTCAGGAGCAATCAAGGCGGAAAGGGATAGTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATTTAGACTAGAGGTGTCAGGAGCAATCAAGGCGGAAAGGGATAGTG  350

seq1  ACTGATGGGGACAGATATGACGGTGGTGAAAGGGTAAGTCCACCAGAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGATGGGGACAGATATGACGGTGGTGAAAGGGTAAGTCCACCAGAGCC  400

seq1  TTTCTATCTGCTGGACGGATCACACAGCATCAGAGCCAGCCTTCCTGACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATCTGCTGGACGGATCACACAGCATCAGAGCCAGCCTTCCTGACC  450

seq1  TCCCGATAGAGCATCCTCCCTTCCTGGCTCTCCTGCCCTCAGTACTGTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCGATAGAGCATCCTCCCTTCCTGGCTCTCCTGCCCTCAGTACTGTTC  500

seq1  CTGCCTTGGGCATTAGGAGTGGGCTGAAATCTTTAGCTACTGTATGGACC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTTGGGCATTAGGAGTGGGCTGAAATCTTTAGCTACTGTATGGACC  550

seq1  TGGCCACTTCCAGAAGTTCTGCTCTTCTGCCCCTGTGGCTTTTGTACTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCACTTCCAGAAGTTCTGCTCTTCTGCCCCTGTGGCTTTTGTACTTC  600

seq1  CCTGTGACTATTTGATGTCTGGAGTCCCCAGTAGGAGAAGCGATGCGTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGACTATTTGATGTCTGGAGTCCCCAGTAGGAGAAGCGATGCGTAA  650

seq1  TCATGGAGCAAGAAATGAATCAGCTCTGACAAAGGAATACAGTTAGTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGGAGCAAGAAATGAATCAGCTCTGACAAAGGAATACAGTTAGTACA  700

seq1  TCTTAGCCATATGGTCTCAACCCATATCGTGTATCCACAAAATTCGTGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAGCCATATGGTCTCAACCCATATCGTGTATCCACAAAATTCGTGGT  750

seq1  TGAACATGGTCTTGTTAAGTTTTCTCATTATTTGAGATAACCAGTTTCTG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACATGGTCTTGTTAAGTTTTCTCATTATTTGAGATAACCAGTTTCTG  800

seq1  CCTCCCTATTAACATGTCTTTATCAAATGCC-TACTATGCAGGCACTGGG  849
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  CCTCCCTATTAACATGTCTTTATCAAATGCCTTACTATGCAGGCACTGGG  850

seq1  TTGGTTGCCAATGGTTTACTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCT  899
      |||||||||||||| |||| |||||||||||||| |||||||||||||||
seq2  TTGGTTGCCAATGGGTTAC-TTTTCTTCTTCTTC-TCTTCTTCTTCTTCT  898

seq1  TCTTCTTCTTCTTCTTCTTCTTCTTCTTCT  929
      ||||||||||||||||||||||||||| ||
seq2  TCTTCTTCTTCTTCTTCTTCTTCTTCTACT  928

seq1: chr3_100881612_100882759
seq2: B6Ng01-100D06.g_70_1219 (reverse)

seq1  GGGTTTGTGGGTGCTTCCGTCACCATGATGAGCGT-TATTGTGCCCTCTG  49
      ||||||||||||||| ||||  ||||||||||| | |||||| |||| | 
seq2  GGGTTTGTGGGTGCTCCCGTGCCCATGATGAGCCTATATTGT-CCCTTTC  49

seq1  TGCCTCAGTTTCCTAGAAAAGGGGATAATGACTGTA-CCCACTTCATAGA  98
       | ||| ||| |||||||| |||||||||||||||| |||||||||||||
seq2  GGGCTCCGTTCCCTAGAAAGGGGGATAATGACTGTACCCCACTTCATAGA  99

seq1  GTCAATAGGGGAGCCCAGCAGGTGCCAGGTCAGTGCCCAGTATGACTGCC  148
      ||||||| ||||| |||||||  |||||||||||| ||||||| ||||||
seq2  GTCAATA-GGGAGGCCAGCAGTGGCCAGGTCAGTGGCCAGTATAACTGCC  148

seq1  AA-GCAATCCTCTGGTTAGAAC-ACGGAGCTGGAGGAGGGAGCCTGCAAT  196
      || |||||||||| |||||||| |||||||||||||||||| ||||| ||
seq2  AAGGCAATCCTCT-GTTAGAACAACGGAGCTGGAGGAGGGAACCTGC-AT  196

seq1  TTAGAGAC-ACGGGAGCTGCCAAGAGTCAAGATCCCCAGGGAGAGACGAT  245
      | | |||| |||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAGACAACGGGAGCTGCCAAGAGTCAAGATCCCCAGGGAGAGACGAT  246

seq1  GGATGGC-AGAAGGTGCCTGTGGCTCATGAGACGATGGATGGCAGGAGGT  294
      | ||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGGCAAGAAGGTGCCTGTGGCTCATGAGACGATGGATGGCAGGAGGT  296

seq1  GCCTGTGGCTCACGTCCTGGGTAGAGCATAGCCACAGCACAGGAAGGGGA  344
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCCTGTGGCTCACGTCCT-GGTAGAGCATAGCCACAGCACAGGAAGGGGA  345

seq1  CAAGAATTACTGGGGGTTCTGC-TTCTAACTCTTAGCACCTTCTGGAAAA  393
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CAAGAATTACTGGGGGTTCTGCTTTCTAACTCTTAGCACCTTCTGGAAAA  395

seq1  AGCCACCACTTCAACAGTCTAGGAAAGGGGTGGGCTCAGAATGGACGGTG  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCACCACTTCAACAGTCTAGGAAAGGGGTGGGCTCAGAATGGACGGTG  445

seq1  ACAGATACTGGTGATCTGGTAGTCAGGCTGTCTACCAAAGGCTGGGAAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGATACTGGTGATCTGGTAGTCAGGCTGTCTACCAAAGGCTGGGAAAA  495

seq1  TCTGCCAAGTTTATCAGGAGCTACATATGTGGACCTTCAAGCATCACAAT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCAAGTTTATCAGGAGCTACATATGTGGACCTTCAAGCATCACAAT  545

seq1  CCATCGTCTCCTTGGCGGTTTCCTTGATCACACACTCAGAAAGGGGTTAC  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCGTCTCCTTGGCGGTTTCCTTGATCACACACTCAGAAAGGGGTTAC  595

seq1  TCCAGATAACAGAAACCGGTTCTCCTCTAGAACACCACCTCCCATGGGCC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGATAACAGAAACCGGTTCTCCTCTAGAACACCACCTCCCATGGGCC  645

seq1  CATCTCTTCTACAAAATGAATATAGTGGCCCTTCTAGGACACACCTCAGT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTCTTCTACAAAATGAATATAGTGGCCCTTCTAGGACACACCTCAGT  695

seq1  ATGTGAGGACAGCTAGCATGGCTTCATTCTCAAGGCCAGCTCCTCACTGA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAGGACAGCTAGCATGGCTTCATTCTCAAGGCCAGCTCCTCACTGA  745

seq1  GGAGAAAAGGATGGACAGATTTAAGAACCATGAAGGTGAAGGCCAGACAG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAAAAGGATGGACAGATTTAAGAACCATGAAGGTGAAGGCCAGACAG  795

seq1  ATGCTGGACCACCTCTAGCTCCTGCCAGAGTCTCCACCTGGGCAGCCAGC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGGACCACCTCTAGCTCCTGCCAGAGTCTCCACCTGGGCAGCCAGC  845

seq1  CAGCCTCTCTCATGCATCCTGCTCTCCTGAGCCAAGAAAAGCTTCCCTGC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTCTCTCATGCATCCTGCTCTCCTGAGCCAAGAAAAGCTTCCCTGC  895

seq1  TTCTCTGGCCCTCAAAGACTAGTCAAGAAGCCAGGAGATGGGGGGAGGGC  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGGCCCTCAAAGACTAGTCAAGAAGCCAGGAGATGGGGGGAGGGC  945

seq1  TGGGGACTCTTGTGTCATCCTTTGCCTTCTCACAATAAATCACTAGAGTG  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGACTCTTGTGTCATCCTTTGCCTTCTCACAATAAATCACTAGAGTG  995

seq1  TATCTGACCTGAAAGGGGGGTGTCCGTTGTACTGTTTAACTCAGTGCAAA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGACCTGAAAGGGGGGTGTCCGTTGTACTGTTTAACTCAGTGCAAA  1045

seq1  AGTGTCTTATGGGAAATCTTTTCAAAAGTCAGGATTTCTTCGTCCCCGGC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTCTTATGGGAAATCTTTTCAAAAGTCAGGATTTCTTCGTCCCCGGC  1095

seq1  TCTACAAGTCAACTAGGACCATGCATATAGAGGTGATCACTCTACCACTG  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACAAGTCAACTAGGACCATGCATATAGAGGTGATCACTCTACCACTG  1145

seq1  AATTC  1148
      |||||
seq2  AATTC  1150