BAC Information

Click to search

BAC

Clone NameB6Ng01-100H05
Chromosome3 (Build37)
Map Location 64,786,309 - 64,946,528
singlet/doubletdoublet
Overlap geneKcnab1
Upstream geneGmps, LOC670032, EG56544, 4930518C23Rik, LOC380739, EG637004, EG667031, EG637053, LOC672951, EG639869, EG667060, EG667069, LOC100040918, 4933425M15Rik, LOC670110
Downstream geneSsr3, EG433604, EG667093, LOC100041083, 4931440P22Rik, Tiparp, LOC545530, LOC100040978, EG624866, Ccnl1, LOC625048, Veph1, Tpi-rs2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100H05.bB6Ng01-100H05.g
ACCDH909946DH909947
length1,1571,090
definitionDH909946|Mus musculus domesticus DNA, BAC clone: B6Ng01-100H05, 5' end.DH909947|Mus musculus domesticus DNA, BAC clone: B6Ng01-100H05, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(64,786,309 - 64,787,473)(64,945,417 - 64,946,528)
sequence
gaattccattccccatctgaaaaacagactaaatcaacatcacagcagca
ggtcacatgttaccagaggctgggttcactcttagatttttctgtggacc
taacatggcacttgttccaatgctgattagttttgtttaaacgtggggaa
tttctgtatttatgtttattattggcaagtagacaaggcctctcacatta
gctgaagtaggactgggaactctctgcatagcttcagtttcaagttcatg
gtaaataataagtaagtaagtaagtaaataaatcctgcctcctatgtaat
gggactattaacttcaatcactgcacctccctctacttgaagcaatgaaa
agaaacatgtattggctccctttaaaagatggacagaaaataataacacc
tacaaagtaaatcttacacaatcctgagctcactaccatttctccccatt
ggctcatacaaattcattgcttcttctattgtagtagatctttagaaaac
actcagaaaatgcattttttctcatgtcttcacttaacacgtgaattctc
atttgatcaaattagaatttgagctaacttgttctccaaatggttgtaat
atgatggtacctatcatcaatactgtactcttcctgccttgagtaatgtg
cttagaataaaaatatttaagagggactaatatggaagtgacccaaactc
ccagcagctcaagttcctctcctgctagcttttccccagtgtcagatggt
attgtcagagtggagacatctttagaggctgccatcacactgagtcggat
aaagggggaactacacaaagtttctagaaggcagatgggaaacaggaaga
agagagccttgggcctaaaccaagaggagaggggtaagaaacaggtgctt
ctatattgataggcagccccaaggtgagaacatacatagtgcttcacact
gacttcacacaagagacaaaggggctgaacaaggggaagttagtcagaag
caccttaccagctagacatttatcagactgtcgagtttgagggtactgtt
ggctgttgtttcactgctctcaaataaacttcaagagcagtttggagcac
ttttttacctcaaagacctttttgagattggatgagtgttccgtctatat
tgagaat
gaattctcttgggagccagtagttcagttaaataccaaggagtgaagagg
caaggatgtgaatgcttttgtgatgactgtgaagtatcattcttaggccc
aaggttttcactggcctatctaataataccagcagacttcatgttcacaa
atttagctagctttaaatagataatattcaaagtttaaaaacccaaaacc
ctcatctgtcttgaatgtgcactaacttttcttcttgtcactattccctg
agcagctatttacaggacactgctttgcattagggagtagaatggatgat
ttggagacggtatacaggaagatatgcataatttctgtgtaaatgctatg
tgccatttcatacaagagataatagatttcagtagtttaagaggatcctc
aaaccaacttcccacaggccctgagttcagccatctgcattttgagtaca
gttgtatcattgatttaacatatttcatctcaacaaaatgcaattagaaa
aatggaagggaagataaggaaaccatttactttttggtttcccgtatcta
aggagtttctagggaggatatgagctggaagagcctgctcccctcaatgc
ctggggctgttagtgtacaagggtctggctattttaagggatcctgaagc
tagggacttgtttcgtgctccccccccccccccacacacacacacagtta
cttgctattcagtagaagaaaccgtacatgaaggtgaactcgtctggagt
aggaagcctgcctgatgaatttttgaaggcagttttgactacatctgatt
tcctccttgcatgactttgacacatggccctcctaaaagatagataccac
tattttaaattctagtacacgttagaaaatcttgacttttctggaaccag
atttcctgtttcccttaaataccatttttaagagactggactttcaatga
tacctgaggtgttgggagcagggcagggggagtcagcttataatgatgag
ccaaatgtgcttggatttgggattggaacttgaatgggtttgcattaaaa
cactgaatgaatggtttaatctatgtggatcccaaaaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_64786309_64787473
seq2: B6Ng01-100H05.b_46_1202

seq1  GAATTCCATTCCCCATCTGAAAAACAGACTAAATCAACATCACAGCAGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTCCCCATCTGAAAAACAGACTAAATCAACATCACAGCAGCA  50

seq1  GGTCACATGTTACCAGAGGCTGGGTTCACTCTTAGATTTTTCTGTGGACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACATGTTACCAGAGGCTGGGTTCACTCTTAGATTTTTCTGTGGACC  100

seq1  TAACATGGCACTTGTTCCAATGCTGATTAGTTTTGTTTAAACGTGGGGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATGGCACTTGTTCCAATGCTGATTAGTTTTGTTTAAACGTGGGGAA  150

seq1  TTTCTGTATTTATGTTTATTATTGGCAAGTAGACAAGGCCTCTCACATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTATTTATGTTTATTATTGGCAAGTAGACAAGGCCTCTCACATTA  200

seq1  GCTGAAGTAGGACTGGGAACTCTCTGCATAGCTTCAGTTTCAAGTTCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGAAGTAGGACTGGGAACTCTCTGCATAGCTTCAGTTTCAAGTTCATG  250

seq1  GTAAATAATAAGTAAGTAAGTAAGTAAATAAATCCTGCCTCCTATGTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAATAATAAGTAAGTAAGTAAGTAAATAAATCCTGCCTCCTATGTAAT  300

seq1  GGGACTATTAACTTCAATCACTGCACCTCCCTCTACTTGAAGCAATGAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACTATTAACTTCAATCACTGCACCTCCCTCTACTTGAAGCAATGAAA  350

seq1  AGAAACATGTATTGGCTCCCTTTAAAAGATGGACAGAAAATAATAACACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAACATGTATTGGCTCCCTTTAAAAGATGGACAGAAAATAATAACACC  400

seq1  TACAAAGTAAATCTTACACAATCCTGAGCTCACTACCATTTCTCCCCATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAAAGTAAATCTTACACAATCCTGAGCTCACTACCATTTCTCCCCATT  450

seq1  GGCTCATACAAATTCATTGCTTCTTCTATTGTAGTAGATCTTTAGAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCATACAAATTCATTGCTTCTTCTATTGTAGTAGATCTTTAGAAAAC  500

seq1  ACTCAGAAAATGCATTTTTTCTCATGTCTTCACTTAACACGTGAATTCTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCAGAAAATGCATTTTTTCTCATGTCTTCACTTAACACGTGAATTCTC  550

seq1  ATTTGATCAAATTAGAATTTGAGCTAACTTGTTCTCCAAATGGTTGTAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATCAAATTAGAATTTGAGCTAACTTGTTCTCCAAATGGTTGTAAT  600

seq1  ATGATGGTACCTATCATCAATACTGTACTCTTCCTGCCTTGAGTAATGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGTACCTATCATCAATACTGTACTCTTCCTGCCTTGAGTAATGTG  650

seq1  CTTAGAATAAAAATATTTAAGAGGGACTAATATGGAAGTGACCCAAACTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGAATAAAAATATTTAAGAGGGACTAATATGGAAGTGACCCAAACTC  700

seq1  CCAGCAGCTCAAGTTCCTCTCCTGCTAGC-TTTCCCCAGTGTCAGATGGT  749
      ||||||||||||||||||||||||||||| ||||||||||||||||||||
seq2  CCAGCAGCTCAAGTTCCTCTCCTGCTAGCTTTTCCCCAGTGTCAGATGGT  750

seq1  ATTGTCAGAGTGGAGACATC-TTAGAGGCTGCCATCACACTGAGTCGGAT  798
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATTGTCAGAGTGGAGACATCTTTAGAGGCTGCCATCACACTGAGTCGGAT  800

seq1  -AAGGGGGAACTACACAAAGTTTCTAGAAGGCAGAT-GGAAACAGGAAGA  846
       ||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AAAGGGGGAACTACACAAAGTTTCTAGAAGGCAGATGGGAAACAGGAAGA  850

seq1  AGAGAGCCTTGGCCTAAAACCAAGAGGAGA-GGGTAAGAAACAGGTGC-T  894
      |||||||||||| |  |||||||||||||| ||||||||||||||||| |
seq2  AGAGAGCCTTGGGCCTAAACCAAGAGGAGAGGGGTAAGAAACAGGTGCTT  900

seq1  CTATATTGATAGGCAGCCCCAAGGTGAGAACATACATAGTGCTTCACACT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATATTGATAGGCAGCCCCAAGGTGAGAACATACATAGTGCTTCACACT  950

seq1  GACTTCACACAAAGAGACAAAAGGGGGCTGAACAAGGGGAAGTTAAGTCA  994
      |||||||||| ||||||||||  ||||||||||||||||||||| |||||
seq2  GACTTCACAC-AAGAGACAAA--GGGGCTGAACAAGGGGAAGTT-AGTCA  996

seq1  GGAGCACCTTACCCAGCTAAGACATTTTATCAGACATGTCCGAGTTTGAG  1044
      | ||||||||| |||||| ||||| |||||||||| ||| ||||||||||
seq2  GAAGCACCTTA-CCAGCT-AGACA-TTTATCAGAC-TGT-CGAGTTTGAG  1041

seq1  GGTACTTGTTGGCTGTTGGTTTTCACTGCTCTCAAAATAAACCTTCAAAA  1094
      ||||| ||||||||||||  ||||||||||||| ||||||| ||||  ||
seq2  GGTAC-TGTTGGCTGTTG--TTTCACTGCTCTC-AAATAAA-CTTC--AA  1084

seq1  GAGCAGTTTGAAGCACTTTTTTACTCTAAACACCTTTCTGAGA-TGGATG  1143
      |||||||||| |||||||||||||   ||| |||||| ||||| ||||||
seq2  GAGCAGTTTGGAGCACTTTTTTACCTCAAAGACCTTTTTGAGATTGGATG  1134

seq1  AGTGTTCCGTC-ATAATGAGAAT  1165
      ||||||||||| ||| |||||||
seq2  AGTGTTCCGTCTATATTGAGAAT  1157

seq1: chr3_64945417_64946528
seq2: B6Ng01-100H05.g_70_1159 (reverse)

seq1  TTTTTTTCTGGGGATCCACATAGTATTTAAACCATTCATATCAGTGTTTT  50
      |||||||   |||||||||||||   ||||||||||||| ||||||||||
seq2  TTTTTTT---GGGATCCACATAG--ATTAAACCATTCAT-TCAGTGTTTT  44

seq1  AATGCCAAACACACTCCAAGTTCCAAATACCCAAAATACAAGTCAACATT  100
      |||| ||||| || | |||||||||   | || |||| ||||   |||||
seq2  AATG-CAAACCCA-TTCAAGTTCCA---ATCCCAAATCCAAG--CACATT  87

seq1  TTGGCCTCATCATTTATAAGCTGGACTCCCCCTGCCCTGCCTCCCAAACA  150
      |  | ||||||| ||||||||| |||||||||||||||| ||||| ||||
seq2  T--GGCTCATCA-TTATAAGCT-GACTCCCCCTGCCCTG-CTCCC-AACA  131

seq1  CCCTCAGGTTTCATTTGAAAGTCCAGTCTCTT-AAAATGGTATTTTAAGG  199
       |||||||| ||| |||||||||||||||||| ||||||||| |||||||
seq2  -CCTCAGGTATCA-TTGAAAGTCCAGTCTCTTAAAAATGGTA-TTTAAGG  178

seq1  GAAACAGGAAATCTGGTTCCAG-AAAGTCAAGATTTTCTAACGTGTACTA  248
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  GAAACAGGAAATCTGGTTCCAGAAAAGTCAAGATTTTCTAACGTGTACTA  228

seq1  GAATTTAAAATAGTGGATATCTATCTTTTAGGAGGGCCATGTGTCAAAGT  298
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  GAATTTAAAATAGTGG-TATCTATCTTTTAGGAGGGCCATGTGTCAAAGT  277

seq1  CAATGCAAGGAGGAAATCAGATGTAGTCAAAACTGCCTTCAAAAATTCAT  348
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  C-ATGCAAGGAGGAAATCAGATGTAGTCAAAACTGCCTTCAAAAATTCAT  326

seq1  CAGGCAGGCTTCCTACTCCAGACGAGTTCACCTTCATGTACGGTTTCTTC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCAGGCTTCCTACTCCAGACGAGTTCACCTTCATGTACGGTTTCTTC  376

seq1  TACTGAATAGCAAGTAACTGTGTGTGTGTGTGGGGGGGGGGGGGGGAGCA  448
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TACTGAATAGCAAGTAACTGTGTGTGTGTGT-GGGGGGGGGGGGGGAGCA  425

seq1  CG-AACAAGTCCCTAGCTTCAGGATCCCTTAAAATAGCCAGACCCTTGTA  497
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAAACAAGTCCCTAGCTTCAGGATCCCTTAAAATAGCCAGACCCTTGTA  475

seq1  CACTAACAGCCCCAGGCATTGAGGGGAGCAGGCTCTTCCAGCTCATATCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTAACAGCCCCAGGCATTGAGGGGAGCAGGCTCTTCCAGCTCATATCC  525

seq1  TCCCTAGAAACTCCTTAGATACGGGAAACCAAAAAGTAAATGGTTTCCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTAGAAACTCCTTAGATACGGGAAACCAAAAAGTAAATGGTTTCCTT  575

seq1  ATCTTCCCTTCCATTTTTCTAATTGCATTTTGTTGAGATGAAATATGTTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTTCCCTTCCATTTTTCTAATTGCATTTTGTTGAGATGAAATATGTTA  625

seq1  AATCAATGATACAACTGTACTCAAAATGCAGATGGCTGAACTCAGGGCCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATGATACAACTGTACTCAAAATGCAGATGGCTGAACTCAGGGCCT  675

seq1  GTGGGAAGTTGGTTTGAGGATCCTCTTAAACTACTGAAATCTATTATCTC  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGAAGTTGGTTTGAGGATCCTCTTAAACTACTGAAATCTATTATCTC  725

seq1  TTGTATGAAATGGCACATAGCATTTACACAGAAATTATGCATATCTTCCT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATGAAATGGCACATAGCATTTACACAGAAATTATGCATATCTTCCT  775

seq1  GTATACCGTCTCCAAATCATCCATTCTACTCCCTAATGCAAAGCAGTGTC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATACCGTCTCCAAATCATCCATTCTACTCCCTAATGCAAAGCAGTGTC  825

seq1  CTGTAAATAGCTGCTCAGGGAATAGTGACAAGAAGAAAAGTTAGTGCACA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTAAATAGCTGCTCAGGGAATAGTGACAAGAAGAAAAGTTAGTGCACA  875

seq1  TTCAAGACAGATGAGGGTTTTGGGTTTTTAAACTTTGAATATTATCTATT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAGACAGATGAGGGTTTTGGGTTTTTAAACTTTGAATATTATCTATT  925

seq1  TAAAGCTAGCTAAATTTGTGAACATGAAGTCTGCTGGTATTATTAGATAG  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGCTAGCTAAATTTGTGAACATGAAGTCTGCTGGTATTATTAGATAG  975

seq1  GCCAGTGAAAACCTTGGGCCTAAGAATGATACTTCACAGTCATCACAAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTGAAAACCTTGGGCCTAAGAATGATACTTCACAGTCATCACAAAA  1025

seq1  GCATTCACATCCTTGCCTCTTCACTCCTTGGTATTTAACTGAACTACTGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCACATCCTTGCCTCTTCACTCCTTGGTATTTAACTGAACTACTGG  1075

seq1  CTCCCAAGAGAATTC  1112
      |||||||||||||||
seq2  CTCCCAAGAGAATTC  1090