BAC Information

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BAC

Clone NameB6Ng01-100K04
Chromosome3 (Build37)
Map Location 61,356,762 - 61,357,887
singlet/doubletsinglet
Overlap genenone
Upstream geneMbnl1, LOC676933, LOC100040501, EG666853, P2ry1, Rap2b, LOC666891
Downstream geneLOC669910, LOC676965, 4631416L12Rik, Dhx36, Gpr149
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100K04.bB6Ng01-100K04.g
ACCDH910073DH910074
length1,1121,121
definitionDH910073|Mus musculus domesticus DNA, BAC clone: B6Ng01-100K04, 5' end.DH910074|Mus musculus domesticus DNA, BAC clone: B6Ng01-100K04, 3' end.
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcatgagaacaacatccctttcctatccagaccgtgttcttatctt
tatcctcaggatttgagaacatttctgacccctctttctcaatgttccct
gaaccttcggtgtagaggttgtgatacttgatacttgttgttgataaatt
gggactggacacacaccatggtcctcaattctctaattttgacaaattgt
ggatctttattgaaggattcaaaataagcttcttcaataacatgtgagag
ctacccttatctatgggtataaggatgtgtatttattaggtagttattgg
aaatcatatcaccttaataatatgataggagtgagtgatctccccttgtt
atgtcctgttttctaggtttatagtaccaagaatgggttcctgaccaggt
tttagatccaatcagataggtcttggttgcccccaagataaaagtgtcac
tattgcaattaaggctgtcttctgagtgtcgtaattgtgtttctcagttt
tgaaagttgtgtacaaatgtcaactttttactcttgggaacttgcataat
accttctgacactttgaaaggcatccttcagggagaatacttctgggtca
atgccagctttatttctccaactcctcttactgaaacttatgctcatttc
cctctttagtcagaagtgttactcccaatattttgtatagtattgccttt
gtagatatgaattctcttagactgttcatattatggaatgaacatattat
tttctttctttctcatctttggcaaatacatttgctgggtaatggagtct
cggttgacatctgtacttgaaatgctgatccaggctcttctagcttttta
aagtttccattgagaatcaagtgttactctggatgtctgtgcatagatat
gtaactcatggcttttcccttgtttttttccatatacttcctctttctgt
atgtttaggcttttaagatatatgctgtggatagttcttctggctctgct
cttgggggtccatatggttcttgtatggatgagaaaggcttccttctttg
gaaagttttttttcctcaacccattttttttttattttaatttgggttga
aaaaagaactct
gaattccaggacatccagggctttacagagaaacccttcgtcaaaaaaaa
aaaaaaaaaatcccataaatacaaaataatctgattttatttcatcatgt
gacagtgggaaaagactgtaaatgaatagaaagataaattatagggaaag
ctcagggttgtggctgcagcaatggctcagcagttcagaacacttgctgc
tctcagtgataatctgggtttggtgtccagcacttgcacagtgtctcaca
accatctataagtctacttccaggggatctgatacccaattctggccttc
attggcacttcacatacatggtgcacacacaaataggaaggcaaaacact
tatgtggataaaataaataaatcttttaaaaacagaaagtatgggatgac
aggattttttggtgaattctattacacagtaaaggaaaagccatcattaa
gagtgttgaaagtgatccacaaaagattaatatagaaaatatgcttcata
gagtcagtgtatcttgataacaaatccagataaggacaaacacacacaca
agcacatgcacacacacacatacactcgagagaccgagagaggcagggag
agagacagagacacaaagagaaacagaaagagaaagagagaaaacataca
cacatggactcactgagataggcagacagacagagagaaaactaggaagc
aacacagaaagaaaacacacacacacacattcacacacacacacacacac
acacacacagagagagagagagagagagagagagagagagagagagagag
agagagaactgtaggtcagttttcccaaagaatataggtgaaaaaaattc
taataaaatgcttgcaaatcaaatttgaaaatttattattaatagggaaa
aaacaaaatattttgactaaagtgttgaacaagcatgatctctctcttaa
ttaaaatagtgtttgaatatcttaataaaaggattaaacacaaataatta
gataaaagacataagaaaatggtgtcaagttatccttcttgcgatggtga
gatcattctcttaaaggcctttgatctttcttcaaagactctctcgaatc
tgacaaaaaagttttacaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_61356762_61357887
seq2: B6Ng01-100K04.g_68_1188

seq1  GAATTCCAGGACATCCAGGGCTTTACAGAGAAACCCTTCGTCAAAAAAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACATCCAGGGCTTTACAGAGAAACCCTTCGTCAAAAAAAA  50

seq1  AAAAAAAAAATCCCATAAATACAAAATAATCTGATTTTATTTCATCATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAATCCCATAAATACAAAATAATCTGATTTTATTTCATCATGT  100

seq1  GACAGTGGGAAAAGACTGTAAATGAATAGAAAGATAAATTATAGGGAAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGGGAAAAGACTGTAAATGAATAGAAAGATAAATTATAGGGAAAG  150

seq1  CTCAGGGTTGTGGCTGCAGCAATGGCTCAGCAGTTCAGAACACTTGCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGGTTGTGGCTGCAGCAATGGCTCAGCAGTTCAGAACACTTGCTGC  200

seq1  TCTCAGTGATAATCTGGGTTTGGTGTCCAGCACTTGCACAGTGTCTCACA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTGATAATCTGGGTTTGGTGTCCAGCACTTGCACAGTGTCTCACA  250

seq1  ACCATCTATAAGTCTACTTCCAGGGGATCTGATACCCAATTCTGGCCTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCTATAAGTCTACTTCCAGGGGATCTGATACCCAATTCTGGCCTTC  300

seq1  ATTGGCACTTCACATACATGGTGCACACACAAATAGGAAGGCAAAACACT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGCACTTCACATACATGGTGCACACACAAATAGGAAGGCAAAACACT  350

seq1  TATGTGGATAAAATAAATAAATCTTTTAAAAACAGAAAGTATGGGATGAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGGATAAAATAAATAAATCTTTTAAAAACAGAAAGTATGGGATGAC  400

seq1  AGGATTTTTTGGTGAATTCTATTACACAGTAAAGGAAAAGCCATCATTAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATTTTTTGGTGAATTCTATTACACAGTAAAGGAAAAGCCATCATTAA  450

seq1  GAGTGTTGAAAGTGATCCACAAAAGATTAATATAGAAAATATGCTTCATA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTTGAAAGTGATCCACAAAAGATTAATATAGAAAATATGCTTCATA  500

seq1  GAGTCAGTGTATCTTGATAACAAATCCAGATAAGGACAAACACACACACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAGTGTATCTTGATAACAAATCCAGATAAGGACAAACACACACACA  550

seq1  AGCACATGCACACACACACATACACTCGAGAGACCGAGAGAGGCAGGGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACATGCACACACACACATACACTCGAGAGACCGAGAGAGGCAGGGAG  600

seq1  AGAGACAGAGACACAAAGAGAAACAGAAAGAGAAAGAGAGAAAACATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACAGAGACACAAAGAGAAACAGAAAGAGAAAGAGAGAAAACATACA  650

seq1  CACATGGACTCACTGAGATAGGCAGACAGACAGAGAGAAAACTAGGAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGACTCACTGAGATAGGCAGACAGACAGAGAGAAAACTAGGAAGC  700

seq1  AACACAGAAAGAAAACACACACACACACATTCACACACACACACACACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACAGAAAGAAAACACACACACACACATTCACACACACACACACACAC  750

seq1  ACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  800

seq1  AGAGAGAACTGTAGGTCAGTTTTCCCAAAGAATATAGGTGAAAAAAATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAACTGTAGGTCAGTTTTCCCAAAGAATATAGGTGAAAAAAATTC  850

seq1  TCAATAAAATGCTTGCAAATCAAATTGAAAAATTTATATTAAATAGGGAA  900
      | ||||||||||||||||||||||||  |||||||||  | |||||||||
seq2  T-AATAAAATGCTTGCAAATCAAATTTGAAAATTTATTATTAATAGGGAA  899

seq1  AAAACAAAATATTTTGACTAAAGTGTTGAACAAGCATGATCATCTCTCTT  950
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  AAAACAAAATATTTTGACTAAAGTGTTGAACAAGCATGATC-TCTCTCTT  948

seq1  AATTAAAATAGTGTTTG-ATATCTTAATAAAAGGATTAAAACACAAAATA  999
      ||||||||||||||||| ||||||||||||||||||| |||||| |||||
seq2  AATTAAAATAGTGTTTGAATATCTTAATAAAAGGATT-AAACAC-AAATA  996

seq1  ATTAGATAAAAGACATAAGAAAAATGTGTCAAGTTATCCCTTCTTGCAGA  1049
      |||||||||||||||||||||||  |||||||||||| ||||||||| ||
seq2  ATTAGATAAAAGACATAAGAAAATGGTGTCAAGTTAT-CCTTCTTGC-GA  1044

seq1  TGGTGAGATCATTCTCTTAAAGGACCTTGTAGTCTTCTCTAGAGA-ACTC  1098
      ||||||||||||||||||||||| ||||  |   ||||  | |||  |||
seq2  TGGTGAGATCATTCTCTTAAAGG-CCTTTGATCTTTCTTCAAAGACTCTC  1093

seq1  TCAGATCTGACAAAATAGTTTAACAAAA  1126
      ||  ||||||||||| ||||| ||||||
seq2  TCGAATCTGACAAAAAAGTTTTACAAAA  1121