BAC Information

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BAC

Clone NameB6Ng01-100M19
Chromosome3 (Build37)
Map Location 139,801,947 - 139,941,181
singlet/doubletdoublet
Overlap genenone
Upstream geneEG229879, B930007M17Rik, LOC100039840, LOC229883
Downstream geneLOC621343, 4930590L14Rik, Pdha2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100M19.bB6Ng01-100M19.g
ACCDH910185DH910186
length2641,096
definitionDH910185|Mus musculus domesticus DNA, BAC clone: B6Ng01-100M19, 5' end.DH910186|Mus musculus domesticus DNA, BAC clone: B6Ng01-100M19, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(139,801,947 - 139,802,210)(139,940,072 - 139,941,181)
sequence
tgtatttctatttctgtgactaataaaagaccttcacaggtattgtagtc
attgatatatagctgtgaagagacacagtgaccatggtaactgttataaa
ggaaaacacttaattgaggcttgcttacaattttagatgtttaatctatt
atcatcatggtgggaagcatggtgacacataggtggacatgctcctggta
gctagtcagtcctgtatctgcataggcaggcagcagggagggagagggag
agggagagggagga
gaattcagttccattgctgggaaggggagttgagcaacttgatgggtagt
aatttcatctaattaaatatgaagacctatgagtttcaggagggacttaa
cacatcagtagttcaaatttagacctattcaatttggactgtgtgtgaaa
tatcccattataaatgtcaaaaataatcatacctatgtataagaaaatac
gagacaaacttcttattctagcctcccaggtagaggatgaacagcaacta
gagaaaggccagtgaacaggcagagctttgggtaagcatgggaaatttga
gtttgatccccagtgcccatgtttaaaaatatccatgtatggttggtgca
agttgtctgcctagcatgggaaaggcagaaacaagtggaagtctgtggct
tgcccctgcaattgcatagactatttggagaattctagtcagttggagaa
ggccctgcctcgaagcaaggcagatgacattgcaagagaatctgatttga
actgtgagcattcccccaggttcaaattatttcttttaaagaaatctaga
aagtataaaaagacctttaaaatggaggcagatacattaccaatgttaag
atgagtttgaaatattccctcactaactataaaatataatgggctcagct
tacttcccatatggaagctcacacttgacagccagtgagctatggacttt
ctctgagcatcaccattatacaacatctggaacaaatgtctctgtgatga
tgcacagaaagcagacaatcagagttttcagaggctaattccttcttcat
ttaaattgatgtaacatttcacagtctctcaaaggttttccatactctga
tttaaaaacaaccaaaacctttaaatattcctcacagcaaggtctaccta
tttatatatattctaaaatggatatttctgcttttatgtggaatacagat
tttattcatatgcattattcaaaagacatttagattatagttgtccagaa
ttgttttctaaatcttaagtatgtttagattttgtattttattctaaata
agtcattggatttttttaaagcctattggtacctcagtcttgtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_139801947_139802210
seq2: B6Ng01-100M19.b_52_315

seq1  TGTATTTCTATTTCTGTGACTAATAAAAGACCTTCACAGGTATTGTAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTCTATTTCTGTGACTAATAAAAGACCTTCACAGGTATTGTAGTC  50

seq1  ATTGATATATAGCTGTGAAGAGACACAGTGACCATGGTAACTGTTATAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGATATATAGCTGTGAAGAGACACAGTGACCATGGTAACTGTTATAAA  100

seq1  GGAAAACACTTAATTGAGGCTTGCTTACAATTTTAGATGTTTAATCTATT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAACACTTAATTGAGGCTTGCTTACAATTTTAGATGTTTAATCTATT  150

seq1  ATCATCATGGTGGGAAGCATGGTGACACATAGGTGGACATGCTCCTGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATCATGGTGGGAAGCATGGTGACACATAGGTGGACATGCTCCTGGTA  200

seq1  GCTAGTCAGTCCTGTATCTGCATAGGCAGGCAGCAGGGAGGGAGAGGGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTCAGTCCTGTATCTGCATAGGCAGGCAGCAGGGAGGGAGAGGGAG  250

seq1  AGGGAGAGGGAGGA  264
      ||||||||||||||
seq2  AGGGAGAGGGAGGA  264

seq1: chr3_139940072_139941181
seq2: B6Ng01-100M19.g_67_1162 (reverse)

seq1  TATACAAGACTGAGGTACACAATAGCCTATTTAAAAAAAAAATCAAAATG  50
      |||||||||||||||||| |||||| || |     |||||||||  ||||
seq2  TATACAAGACTGAGGTAC-CAATAGGCTTT-----AAAAAAATC-CAATG  43

seq1  ACTTATTTTAGAATAAAATACAATATCTAAACATACCTGAAGATTTAGAA  100
      ||||| ||||||||||||||||| ||||||||||| || |||||||||||
seq2  ACTTA-TTTAGAATAAAATACAAAATCTAAACATA-CTTAAGATTTAGAA  91

seq1  AACAATTCTTGGAACAACTATAAATCTAAATGTCCTTTTTGAAT-ATGCA  149
      |||||||||  | |||||||| ||||||||||||  |||||||| |||||
seq2  AACAATTCT--GGACAACTAT-AATCTAAATGTC--TTTTGAATAATGCA  136

seq1  TATGAATAAAATCTGTATTCCACATAAAAGCAGAAATATCCATTTTAGAA  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGAATAAAATCTGTATTCCACATAAAAGCAGAAATATCCATTTTAGAA  186

seq1  TATATATAAATAGGTAGACCTTGCTGTGAGGAATATTTAAAGGTTTTGGT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATAAATAGGTAGACCTTGCTGTGAGGAATATTTAAAGGTTTTGGT  236

seq1  TGTTTTTAAATCAGAGTATGGAAAACCTTTGAGAGACTGTGAAATGTTAC  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTAAATCAGAGTATGGAAAACCTTTGAGAGACTGTGAAATGTTAC  286

seq1  ATCAATTTAAATGGAAGAAGGAATTAGCCTCTGAAAACTCTGATTGTCTG  349
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTAAAT-GAAGAAGGAATTAGCCTCTGAAAACTCTGATTGTCTG  335

seq1  CTTTCTGTGCATCATCACAGAGACATTTGTTCCAGATGTTGTATAATGGT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTGTGCATCATCACAGAGACATTTGTTCCAGATGTTGTATAATGGT  385

seq1  GATGCTCAGAGAAAGTCCATAGCTCACTGGCTGTCAAGTGTGAGCTTCCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTCAGAGAAAGTCCATAGCTCACTGGCTGTCAAGTGTGAGCTTCCA  435

seq1  TATGGGAAGTAAGCTGAGCCCATTATATTTTATAGTTAGTGAGGGAATAT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGAAGTAAGCTGAGCCCATTATATTTTATAGTTAGTGAGGGAATAT  485

seq1  TTCAAACTCATCTTAACATTGGTAATGTATCTGCCTCCATTTTAAAGGTC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTCATCTTAACATTGGTAATGTATCTGCCTCCATTTTAAAGGTC  535

seq1  TTTTTATACTTTCTAGATTTCTTTAAAAGAAATAATTTGAACCTGGGGGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATACTTTCTAGATTTCTTTAAAAGAAATAATTTGAACCTGGGGGA  585

seq1  ATGCTCACAGTTCAAATCAGATTCTCTTGCAATGTCATCTGCCTTGCTTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCACAGTTCAAATCAGATTCTCTTGCAATGTCATCTGCCTTGCTTC  635

seq1  GAGGCAGGGCCTTCTCCAACTGACTAGAATTCTCCAAATAGTCTATGCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCAGGGCCTTCTCCAACTGACTAGAATTCTCCAAATAGTCTATGCAA  685

seq1  TTGCAGGGGCAAGCCACAGACTTCCACTTGTTTCTGCCTTTCCCATGCTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCAGGGGCAAGCCACAGACTTCCACTTGTTTCTGCCTTTCCCATGCTA  735

seq1  GGCAGACAACTTGCACCAACCATACATGGATATTTTTAAACATGGGCACT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGACAACTTGCACCAACCATACATGGATATTTTTAAACATGGGCACT  785

seq1  GGGGATCAAACTCAAATTTCCCATGCTTACCCAAAGCTCTGCCTGTTCAC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGATCAAACTCAAATTTCCCATGCTTACCCAAAGCTCTGCCTGTTCAC  835

seq1  TGGCCTTTCTCTAGTTGCTGTTCATCCTCTACCTGGGAGGCTAGAATAAG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCTTTCTCTAGTTGCTGTTCATCCTCTACCTGGGAGGCTAGAATAAG  885

seq1  AAGTTTGTCTCGTATTTTCTTATACATAGGTATGATTATTTTTGACATTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTCTCGTATTTTCTTATACATAGGTATGATTATTTTTGACATTT  935

seq1  ATAATGGGATATTTCACACACAGTCCAAATTGAATAGGTCTAAATTTGAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGGGATATTTCACACACAGTCCAAATTGAATAGGTCTAAATTTGAA  985

seq1  CTACTGATGTGTTAAGTCCCTCCTGAAACTCATAGGTCTTCATATTTAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGATGTGTTAAGTCCCTCCTGAAACTCATAGGTCTTCATATTTAAT  1035

seq1  TAGATGAAATTACTACCCATCAAGTTGCTCAACTCCCCTTCCCAGCAATG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATGAAATTACTACCCATCAAGTTGCTCAACTCCCCTTCCCAGCAATG  1085

seq1  GAACTGAATTC  1110
      |||||||||||
seq2  GAACTGAATTC  1096