BAC Information

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BAC

Clone NameB6Ng01-100P01
Chromosome3 (Build37)
Map Location 71,465,635 - 71,600,195
singlet/doubletdoublet
Overlap genenone
Upstream geneEG625901, EG667377
Downstream geneLOC667385, LOC100041459
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-100P01.bB6Ng01-100P01.g
ACCDH910287DH910288
length1,0951,122
definitionDH910287|Mus musculus domesticus DNA, BAC clone: B6Ng01-100P01, 5' end.DH910288|Mus musculus domesticus DNA, BAC clone: B6Ng01-100P01, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(71,465,635 - 71,466,721)(71,599,070 - 71,600,195)
sequence
gaattcagttatctagtagttcataacattttaatgctatatagaaaatt
gtattttagtgtctatcttattgacgataaatgagtattcaaaactttat
cattaaattaatatgaccttttaaataacgattagcttactattttgctc
tctcaatcttaaacttattttaaaattattgttgtattctttgagaattt
tataccaatgtacatgttttggttaaatttatcctccttctttcctctcc
aacttcttccctatttttccattcttgaaatttgttttgtctaattagtt
agagttgctttcatttaatcaaacttatggcttcattgtaatacctctgc
agttgtacttatgtctactgatctattgactacagaatatcactatttta
acatatattaaggatattattctatttaacagagaaataagggagaaata
acaggtatgatacactaagtttttcaatttttttccttagttttaatcta
agtaaagcttattggaaattttatcttttatggtagtgccaagccctcta
ctactataaaatacagagaaccattaaatgatagctaatattaattaatt
atagtgaatttgtcaacagttgactcacagataattcaggaaaagacaca
atcataaacgttgaggattcaacttccttatgtggatatagaagagtggt
gagcataagttctttttttttttttttttttggttaaattcaaacagctg
aaaagttgtcattattgtgaaataagatcaatgaatttgtcctgatggta
aaatcacactcttatttatgtaatttctggttttcccttgaattccacaa
cccttttatttatggctgagattgagacatcatacacacagcatcaatgt
aaattattttcatccaaatttcttgtatttgtatatttttatataatgtt
tggtgtgcgtactcacaataatttttacctgttcatacattaaggcttat
gttttatactaacaatgaatgacaagtactgaaaagaatgcttgcatact
tggagaccattccaattttgaattttccatcaactcaattaagaa
gaattcatgtacatactaatagaccaaggaatcaagattaatttaaaaca
gacaaccagaaatatcagagtgtgcaataactatatttatatttatatat
taatataaatgactatatattatggtgtgctttaactatatttttagaca
caagtagaatgaagaagccaaaaaatttgtattactatacacaaccacaa
tcatgaaagcatcagagcagcttgccagcaaatgcctgcaagcagtagtg
ttcatattggaagaattactgcaggtgatatctatcccacactcaaatgt
cataaagacactagctcaaagggagagtcagcactgggtcagcagatact
gaaagtagatttagaagatgtcagcataaatgtagtagtaaacttatgag
catgatcgatggtgccctcaagaagcatataaatgaatacacattcaatg
ggaaggttgaattatccctttgtgattctcttgaaaagatgcctacatta
tatcaatataaccatgtaacacattgaaaactaaaacttgtcacagtcta
tggctgtgtggatttttatataacattgaaaaaccttgatttttttctac
aaaaacaactattcatagatattattaatgaagaggttttataaatccag
tcaaataatattttctttggacacacacaaacacacatgcatacacacac
acacacacacacattatacatagccagctactacataatttcagtaagaa
ttttataaaattaaaatttaggaatgttttcaatgtcatatagtcatctt
actttattatttttgcacataattaaaagttgcattttaaggtttttaaa
ggtagtgaagcaacaaagaatttaggattgtttccaggacaattatagga
ttcatcagttacaggttttatagtcaatttagtaataccttataaaaatt
tctaagcaattatctatttcaaagtaataacattaaagttaatttctcca
gaaatttatgtctaaaatctttagttttattttgaaatggagctccctca
ataaatatacttatccaaagaaagaggcaagcatacggtagttgatattt
taatttaattccccctctatct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_71465635_71466721
seq2: B6Ng01-100P01.b_46_1140

seq1  GAATTCAGTTATCTAGTAGTTCATAACATTTTAATGCTATATAGAAAATT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTATCTAGTAGTTCATAACATTTTAATGCTATATAGAAAATT  50

seq1  GTATTTTAGTGTCTATCTTATTGACGATAAATGAGTATTCAAAACTTTAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTTAGTGTCTATCTTATTGACGATAAATGAGTATTCAAAACTTTAT  100

seq1  CATTAAATTAATATGACCTTTTAAATAACGATTAGCTTACTATTTTGCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAAATTAATATGACCTTTTAAATAACGATTAGCTTACTATTTTGCTC  150

seq1  TCTCAATCTTAAACTTATTTTAAAATTATTGTTGTATTCTTTGAGAATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAATCTTAAACTTATTTTAAAATTATTGTTGTATTCTTTGAGAATTT  200

seq1  TATACCAATGTACATGTTTTGGTTAAATTTATCCTCCTTCTTTCCTCTCC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCAATGTACATGTTTTGGTTAAATTTATCCTCCTTCTTTCCTCTCC  250

seq1  AACTTCTTCCCTATTTTTCCATTCTTGAAATTTGTTTTGTCTAATTAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTCTTCCCTATTTTTCCATTCTTGAAATTTGTTTTGTCTAATTAGTT  300

seq1  AGAGTTGCTTTCATTTAATCAAACTTATGGCTTCATTGTAATACCTCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGCTTTCATTTAATCAAACTTATGGCTTCATTGTAATACCTCTGC  350

seq1  AGTTGTACTTATGTCTACTGATCTATTGACTACAGAATATCACTATTTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTACTTATGTCTACTGATCTATTGACTACAGAATATCACTATTTTA  400

seq1  ACATATATTAAGGATATTATTCTATTTAACAGAGAAATAAGGGAGAAATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATATTAAGGATATTATTCTATTTAACAGAGAAATAAGGGAGAAATA  450

seq1  ACAGGTATGATACACTAAGTTTTTCAATTTTTTTCCTTAGTTTTAATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGTATGATACACTAAGTTTTTCAATTTTTTTCCTTAGTTTTAATCTA  500

seq1  AGTAAAGCTTATTGGAAATTTTATCTTTTATGGTAGTGCCAAGCCCTCTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAGCTTATTGGAAATTTTATCTTTTATGGTAGTGCCAAGCCCTCTA  550

seq1  CTACTATAAAATACAGAGAACCATTAAATGATAGCTAATATTAATTAATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTATAAAATACAGAGAACCATTAAATGATAGCTAATATTAATTAATT  600

seq1  ATAGTGAATTTGTCAACAGTTGACTCACAGATAATTCAGGAAAAGACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTGAATTTGTCAACAGTTGACTCACAGATAATTCAGGAAAAGACACA  650

seq1  ATCATAAACGTTGAGGATTCAACTTCCTTATGTGGATATAGAAGAGTGGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATAAACGTTGAGGATTCAACTTCCTTATGTGGATATAGAAGAGTGGT  700

seq1  GAGCATAAGTTCTTTTTTTTTTTTTTTTTTTTGGTTAAATTCAAACAGCT  750
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GAGCATAAGTTC-TTTTTTTTTTTTTTTTTTTGGTTAAATTCAAACAGCT  749

seq1  GAAAAGTTGTCATTATTGTGAAATAAGATCAATGAATTTGTCCTGATGGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAGTTGTCATTATTGTGAAATAAGATCAATGAATTTGTCCTGATGGT  799

seq1  AAAATCACACTCTTATTTATGTAATTTCTGGTTTTCCCTTGAATTCCACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCACACTCTTATTTATGTAATTTCTGGTTTTCCCTTGAATTCCACA  849

seq1  --CCCTTTATTTATAGCTGAGATTGAGACATCATACACACAGCATCAATG  898
        || ||||||||| |||||||||||||||||||||||||||||||||||
seq2  ACCCTTTTATTTATGGCTGAGATTGAGACATCATACACACAGCATCAATG  899

seq1  TAAATTA-TTTCAT-CAAAATTCTTGTATTTGTATA-TTTTATATAGTG-  944
      ||||||| |||||| |||| |||||||||||||||| ||||||||| || 
seq2  TAAATTATTTTCATCCAAATTTCTTGTATTTGTATATTTTTATATAATGT  949

seq1  TTGGTGTGCGTACTCACAAT-ATTTTTACCTGTTCAATACATTTAGGCTA  993
      |||||||||||||||||||| |||||||||||||| ||||||| ||||| 
seq2  TTGGTGTGCGTACTCACAATAATTTTTACCTGTTC-ATACATTAAGGCTT  998

seq1  AT-TTTATTACTACAAATGAATGACAAGTACTGAAAAGAATGCTTGCATA  1042
      || |||  |||||  |||||||||||||||||||||||||||||||||||
seq2  ATGTTTTATACTAACAATGAATGACAAGTACTGAAAAGAATGCTTGCATA  1048

seq1  CTTGGAGACAATT-CAAATTTGA--TTTCCATC-ACTCAAAATTAAGAA  1087
      ||||||||| ||| ||| |||||  |||||||| ||||  |||||||||
seq2  CTTGGAGACCATTCCAATTTTGAATTTTCCATCAACTC--AATTAAGAA  1095

seq1: chr3_71599070_71600195
seq2: B6Ng01-100P01.g_70_1191 (reverse)

seq1  AGATAGAGGGGGAAATTAAATTAAAATATCAAACTACCTGTAATTGCTTG  50
      |||||||||||| ||||||||||||||||| ||||||| |||  ||||||
seq2  AGATAGAGGGGG-AATTAAATTAAAATATC-AACTACC-GTA--TGCTTG  45

seq1  CCTCTTTCTATTTGATAAGTATATTTTATTGA-GGAGCTTCAATTTCAAA  99
      ||||||||| || |||||||||| |||||||| ||||| || ||||||||
seq2  CCTCTTTCT-TTGGATAAGTATA-TTTATTGAGGGAGC-TCCATTTCAAA  92

seq1  ATAAAACTTAAAGAATTTTAGACATAATTTCTTGGAGAAATGAACTTT-A  148
      ||||||| ||||| ||||||||||||| ||  ||||||||| |||||| |
seq2  ATAAAAC-TAAAG-ATTTTAGACATAAATTTCTGGAGAAATTAACTTTAA  140

seq1  TGTTATTACTTTGAAATAGATAATTGCTTAGAAATTTTTATAAGGTATTA  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTATTACTTTGAAATAGATAATTGCTTAGAAATTTTTATAAGGTATTA  190

seq1  CTAAATTGACTATAAAA-CTGTAACTGATGAATCCTATAATTGTCCTGGA  247
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTAAATTGACTATAAAACCTGTAACTGATGAATCCTATAATTGTCCTGGA  240

seq1  AAC-ATCCTAAATTCTTTGTTGCTTCACTACCTTTAAAAACCTTAAAATG  296
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAATCCTAAATTCTTTGTTGCTTCACTACCTTTAAAAACCTTAAAATG  290

seq1  CAACTTTTAATTATGTGC-AAAATAAT-AAGTAAGATGACTATATGACAT  344
      |||||||||||||||||| |||||||| ||||||||||||||||||||||
seq2  CAACTTTTAATTATGTGCAAAAATAATAAAGTAAGATGACTATATGACAT  340

seq1  TGAAAACATTCCTAAATTTTAATTTTATAAAATTCTTACTGAAATTATGT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAACATTCCTAAATTTTAATTTTATAAAATTCTTACTGAAATTATGT  390

seq1  AGTAGCTGGCTATGTATAATGTGTGTGTGTGTGTGTGTGTATGCATGTGT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCTGGCTATGTATAATGTGTGTGTGTGTGTGTGTGTATGCATGTGT  440

seq1  GTTTGTGTGTGTCCAAAGAAAATATTATTTGACTGGATTTATAAAACCTC  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTGTGTGTCCAAAGAAAATATTATTTGACTGGATTTATAAAACCTC  490

seq1  TTCATTAATAATATCTATGAATAGTTGTTTTTGTAGAAAAAAATCAAGGT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTAATAATATCTATGAATAGTTGTTTTTGTAGAAAAAAATCAAGGT  540

seq1  TTTTCAATGTTATATAAAAATCCACACAGCCATAGACTGTGACAAGTTTT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCAATGTTATATAAAAATCCACACAGCCATAGACTGTGACAAGTTTT  590

seq1  AGTTTTCAATGTGTTACATGGTTATATTGATATAATGTAGGCATCTTTTC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTCAATGTGTTACATGGTTATATTGATATAATGTAGGCATCTTTTC  640

seq1  AAGAGAATCACAAAGGGATAATTCAACCTTCCCATTGAATGTGTATTCAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGAATCACAAAGGGATAATTCAACCTTCCCATTGAATGTGTATTCAT  690

seq1  TTATATGCTTCTTGAGGGCACCATCGATCATGCTCATAAGTTTACTACTA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGCTTCTTGAGGGCACCATCGATCATGCTCATAAGTTTACTACTA  740

seq1  CATTTATGCTGACATCTTCTAAATCTACTTTCAGTATCTGCTGACCCAGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTATGCTGACATCTTCTAAATCTACTTTCAGTATCTGCTGACCCAGT  790

seq1  GCTGACTCTCCCTTTGAGCTAGTGTCTTTATGACATTTGAGTGTGGGATA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGACTCTCCCTTTGAGCTAGTGTCTTTATGACATTTGAGTGTGGGATA  840

seq1  GATATCACCTGCAGTAATTCTTCCAATATGAACACTACTGCTTGCAGGCA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCACCTGCAGTAATTCTTCCAATATGAACACTACTGCTTGCAGGCA  890

seq1  TTTGCTGGCAAGCTGCTCTGATGCTTTCATGATTGTGGTTGTGTATAGTA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTGGCAAGCTGCTCTGATGCTTTCATGATTGTGGTTGTGTATAGTA  940

seq1  ATACAAATTTTTTGGCTTCTTCATTCTACTTGTGTCTAAAAATATAGTTA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAAATTTTTTGGCTTCTTCATTCTACTTGTGTCTAAAAATATAGTTA  990

seq1  AAGCACACCATAATATATAGTCATTTATATTAATATATAAATATAAATAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACACCATAATATATAGTCATTTATATTAATATATAAATATAAATAT  1040

seq1  AGTTATTGCACACTCTGATATTTCTGGTTGTCTGTTTTAAATTAATCTTG  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTGCACACTCTGATATTTCTGGTTGTCTGTTTTAAATTAATCTTG  1090

seq1  ATTCCTTGGTCTATTAGTATGTACATGAATTC  1126
      ||||||||||||||||||||||||||||||||
seq2  ATTCCTTGGTCTATTAGTATGTACATGAATTC  1122