BAC Information

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BAC

Clone NameB6Ng01-101A03
Chromosome3 (Build37)
Map Location 40,519,709 - 40,635,422
singlet/doubletdoublet
Overlap geneSlc25a31, Hspa4l, Plk4, Mfsd8
Upstream geneLOC100041443, LOC100041458, LOC100040882, Intu
Downstream geneLOC100039027, LOC100039043, 3110057O12Rik, 1700034I23Rik, Larp2, Pgrmc2, EG666004, Ppia-ps3_337.1, LOC100039115, Phf17, Sclt1, D3Ertd751e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101A03.bB6Ng01-101A03.g
ACCDH910331DH910332
length1,1331,082
definitionDH910331|Mus musculus domesticus DNA, BAC clone: B6Ng01-101A03, 5' end.DH910332|Mus musculus domesticus DNA, BAC clone: B6Ng01-101A03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,634,272 - 40,635,422)(40,519,709 - 40,520,796)
sequence
gaattctttatgttctgctgtctatagatgggttcatatttttttgatca
gctaaagcatattatattggcaattgcagtaataaaacaaattaggaatg
aacacaaattagggagatctattcttgatttactaactgtaaatttttaa
atatggaaatggtatttcattttctaaaactagtaccattactttgtgtt
tcttgtttttagtttttagaaaatgtcttactgtgtagacaaggctgcct
gagaacttagacttctcttaccttaacctctgaaatgttgggattataga
tgtttgttacaaaacctagcattgttacattgtattttcttagagtgctt
cattcaatttcccaaaaccactcatagttttcaaaacattgaaaaaattt
aaaatgtactaaggtaaatcacgtatgcttctaaataaaatttgaagaag
tcttatatgatgatatgtggtcttcctgatcaggagagtgaggccagagg
attacttgatcccaggcgtctgacagctggtgccaggtgagggcctttcc
ttaccaagctcactctggaaatatagctcaaggcttgcagcatatttgtc
cagcatgtataaggccctattcttcatgcccagtactgaacaaaaaaaaa
gatatttttaggtttattggttatatttattagtaaatcattaataaccc
tatttctcagaagccaataagaaaaaactatgtctgactatggaaaggat
agggtgctgataaagcaaacggcttctgaattaagtaaaggtcttgttac
tacctgtgcttttctttttaagagagcatcgtgtggatgacttgggacgt
cagtgtaagagtgtgaattttcaagaaggtactgttagcctgtgtggcac
cacctgagtatcctgattgtttgcttggtattcacatggcttttgccctc
agcacatgcagtgggtaactggggaatattttcaatgtaaagaaatatac
attaacctacttaaacaaactatactatttgttatttggtggttttgatt
ggcagactaagcaatgctaagatcacttgtttttttcagaggggtcccaa
cccttgtattcctgcatgctctggaactctagg
gaattcactgttttttgaatgtttgtttttaaagacctgatttggggcat
tctctaaatttggactagagataccttattcaaaagtgcatagtcaaacc
acttggcactttgaaatctcctgaaaataatgaagactatggaagagtta
actgtcgtactctagaggggctctagaatataaggataactttaagcaca
tggtgattgagtcatgaaagttgggcagtacacggagaatttacttcaac
agaccaggagaaactactttgaaataaaatggaccaactcctcttacccc
acccaacagtcctcctctccccttttggtaaattccagccctctttcaac
ttggttccagaacataaaaagaaggaagcatagttcctgttaccccactt
ttcttctcatggctctgtgtgtaaatcagtaggtggatctgtttatttgg
tctagtgtactcacagataacagctttattactgtaggaattggcatcaa
ggttcggggatgaggccagaggttactagtgagctctgcattttccccat
gaatgaatcttgctatatttgtttagctaatgacttcttttgttaagttc
ttcagatttcctgtttaaagtgaataaattgggatgggctgcatagttaa
tgttgcattttttttccttcagtagatttgttttagaaaactttttacta
atgcaaaatttatgcgttcaattctataggatttttaagttattggcgtg
gcaatttgggcaaatgttattcgatactttccaacacaagccttaaactt
cgcttttaggacaaatacaaagaacttttcatgtctggtgttaataaaga
aaaacaggtaattatgtttcatatgcctaaaatttctaagaaactattga
atttgtctttcttatgtcttatttagattgaaggtactctggtaaaacga
tataatatttgtaaaataataaaaatagacacaatgttgaaattagcata
tattaagtaataaaaaatataataaaattttgtttgtatcttcacaaatt
tcatggaatcttcttaatttcagtactaggga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_40634272_40635422
seq2: B6Ng01-101A03.b_47_1179 (reverse)

seq1  CCTAGAGTTACCAGAAGCATGGCAGGGAATACAAGGGTTTTGAGACACCC  50
      ||||||||| |||| ||||| ||| ||||||||||||  ||| ||| |||
seq2  CCTAGAGTT-CCAG-AGCAT-GCA-GGAATACAAGGG--TTGGGAC-CCC  43

seq1  TCTTTGAAAAACACAAGTGATCTTTAGCAATGGCTTTAGTCTTGCCAATC  100
      ||  ||||||| |||||||||| |||||| ||   |||||| ||||||||
seq2  TC--TGAAAAAAACAAGTGATC-TTAGCATTG--CTTAGTC-TGCCAATC  87

seq1  ATAAACACCATATAACAGATAGGTATAGGTTTGTTTAAGTAGGTTAATGT  150
      | || ||||| |||||| ||| ||||| ||||||||||||||||||||||
seq2  AAAACCACCAAATAACAAATA-GTATA-GTTTGTTTAAGTAGGTTAATGT  135

seq1  ATATTTCTTTTACCTTTGAAAATATTCCCCAGTTACCCACTGCATTGTGC  200
      ||||||||||   | ||||||||||||||||||||||||||||| |||||
seq2  ATATTTCTTT--ACATTGAAAATATTCCCCAGTTACCCACTGCA-TGTGC  182

seq1  TGAGGGGCAAAAGCCATGTGAATACCAAGCAAACAATCAGGATACTCAGG  250
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGA-GGGCAAAAGCCATGTGAATACCAAGCAAACAATCAGGATACTCAGG  231

seq1  TGGTGCCACACAGGCTAACAGTACCTTCTTGAAAATTCACACTCTTACAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGCCACACAGGCTAACAGTACCTTCTTGAAAATTCACACTCTTACAC  281

seq1  TGACGTCCCAAGTCATCCACACGATGCTCTCTTAAAAAGAAAAGCACAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTCCCAAGTCATCCACACGATGCTCTCTTAAAAAGAAAAGCACAGG  331

seq1  TAGTAACAAGACC-TTACTTAATTCAGAAGCCGTTTGCTTTATCAGCACC  399
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TAGTAACAAGACCTTTACTTAATTCAGAAGCCGTTTGCTTTATCAGCACC  381

seq1  CTATCCTTTCCATAGTCAGACATAGTTTTTTCTTATTGGCTTCTGAGAAA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCCTTTCCATAGTCAGACATAGTTTTTTCTTATTGGCTTCTGAGAAA  431

seq1  TAGGGTTATTAATGATTTACTAATAAATATAACCAATAAACCTAAAAATA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTATTAATGATTTACTAATAAATATAACCAATAAACCTAAAAATA  481

seq1  TCTTTTTTTTTGTTCAGTACTGGGCATGAAGAATAGGGCCTTATACATGC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTTTTTTGTTCAGTACTGGGCATGAAGAATAGGGCCTTATACATGC  531

seq1  TGGACAAATATGCTGCAAGCCTTGAGCTATATTTCCAGAGTGAGCTTGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGACAAATATGCTGCAAGCCTTGAGCTATATTTCCAGAGTGAGCTTGGT  581

seq1  AAGGAAAGGCCCTCACCTGGCACCAGCTGTCAGACGCCTGGGATCAAGTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAAGGCCCTCACCTGGCACCAGCTGTCAGACGCCTGGGATCAAGTA  631

seq1  ATCCTCTGGCCTCACTCTCCTGATCAGGAAGACCACATATCATCATATAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTCTGGCCTCACTCTCCTGATCAGGAAGACCACATATCATCATATAA  681

seq1  GACTTCTTCAAATTTTATTTAGAAGCATACGTGATTTACCTTAGTACATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTCTTCAAATTTTATTTAGAAGCATACGTGATTTACCTTAGTACATT  731

seq1  TTAAATTTTTTCAATGTTTTGAAAACTATGAGTGGTTTTGGGAAATTGAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTTTTCAATGTTTTGAAAACTATGAGTGGTTTTGGGAAATTGAA  781

seq1  TGAAGCACTCTAAGAAAATACAATGTAACAATGCTAGGTTTTGTAACAAA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGCACTCTAAGAAAATACAATGTAACAATGCTAGGTTTTGTAACAAA  831

seq1  CATCTATAATCCCAACATTTCAGAGGTTAAGGTAAGAGAAGTCTAAGTTC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATAATCCCAACATTTCAGAGGTTAAGGTAAGAGAAGTCTAAGTTC  881

seq1  TCAGGCAGCCTTGTCTACACAGTAAGACATTTTCTAAAAACTAAAAACAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCAGCCTTGTCTACACAGTAAGACATTTTCTAAAAACTAAAAACAA  931

seq1  GAAACACAAAGTAATGGTACTAGTTTTAGAAAATGAAATACCATTTCCAT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACACAAAGTAATGGTACTAGTTTTAGAAAATGAAATACCATTTCCAT  981

seq1  ATTTAAAAATTTACAGTTAGTAAATCAAGAATAGATCTCCCTAATTTGTG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAATTTACAGTTAGTAAATCAAGAATAGATCTCCCTAATTTGTG  1031

seq1  TTCATTCCTAATTTGTTTTATTACTGCAATTGCCAATATAATATGCTTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTCCTAATTTGTTTTATTACTGCAATTGCCAATATAATATGCTTTA  1081

seq1  GCTGATCAAAAAAATATGAACCCATCTATAGACAGCAGAACATAAAGAAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATCAAAAAAATATGAACCCATCTATAGACAGCAGAACATAAAGAAT  1131

seq1  TC  1151
      ||
seq2  TC  1133

seq1: chr3_40519709_40520796
seq2: B6Ng01-101A03.g_70_1151

seq1  GAATTCACTGTTTTTTGAATGTTTGTTTTTAAAGACCTGATTTGGGGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTTTTTTGAATGTTTGTTTTTAAAGACCTGATTTGGGGCAT  50

seq1  TCTCTAAATTTGGACTAGAGATACCTTATTCAAAAGTGCATAGTCAAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTAAATTTGGACTAGAGATACCTTATTCAAAAGTGCATAGTCAAACC  100

seq1  ACTTGGCACTTTGAAATCTCCTGAAAATAATGAAGACTATGGAAGAGTTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGGCACTTTGAAATCTCCTGAAAATAATGAAGACTATGGAAGAGTTA  150

seq1  ACTGTCGTACTCTAGAGGGGCTCTAGAATATAAGGATAACTTTAAGCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCGTACTCTAGAGGGGCTCTAGAATATAAGGATAACTTTAAGCACA  200

seq1  TGGTGATTGAGTCATGAAAGTTGGGCAGTACACGGAGAATTTACTTCAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATTGAGTCATGAAAGTTGGGCAGTACACGGAGAATTTACTTCAAC  250

seq1  AGACCAGGAGAAACTACTTTGAAATAAAATGGACCAACTCCTCTTACCCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCAGGAGAAACTACTTTGAAATAAAATGGACCAACTCCTCTTACCCC  300

seq1  ACCCAACAGTCCTCCTCTCCCCTTTTGGTAAATTCCAGCCCTCTTTCAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACAGTCCTCCTCTCCCCTTTTGGTAAATTCCAGCCCTCTTTCAAC  350

seq1  TTGGTTCCAGAACATAAAAAGAAGGAAGCATAGTTCCTGTTACCCCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTTCCAGAACATAAAAAGAAGGAAGCATAGTTCCTGTTACCCCACTT  400

seq1  TTCTTCTCATGGCTCTGTGTGTAAATCAGTAGGTGGATCTGTTTATTTGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTCATGGCTCTGTGTGTAAATCAGTAGGTGGATCTGTTTATTTGG  450

seq1  TCTAGTGTACTCACAGATAACAGCTTTATTACTGTAGGAATTGGCATCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGTGTACTCACAGATAACAGCTTTATTACTGTAGGAATTGGCATCAA  500

seq1  GGTTCGGGGATGAGGCCAGAGGTTACTAGTGAGCTCTGCATTTTCCCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCGGGGATGAGGCCAGAGGTTACTAGTGAGCTCTGCATTTTCCCCAT  550

seq1  GAATGAATCTTGCTATATTTGTTTAGCTAATGACTTCTTTTGTTAAGTTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAATCTTGCTATATTTGTTTAGCTAATGACTTCTTTTGTTAAGTTC  600

seq1  TTCAGATTTCCTGTTTAAAGTGAATAAATTGGGATGGGCTGCATAGTTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATTTCCTGTTTAAAGTGAATAAATTGGGATGGGCTGCATAGTTAA  650

seq1  TGTTGCATTTTTTTTCCTTCAGTAGATTTGTTTTAGAAAACTTTTTACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGCATTTTTTTTCCTTCAGTAGATTTGTTTTAGAAAACTTTTTACTA  700

seq1  ATGCAAAATTTATGCGTTCAATTCTATAGGATTTTTAAGTTATTGGCGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAAAATTTATGCGTTCAATTCTATAGGATTTTTAAGTTATTGGCGTG  750

seq1  GCAATTT-GGCAAATGTTATTCGATACTTTCCAACACAAGCCTTAAACTT  799
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATTTGGGCAAATGTTATTCGATACTTTCCAACACAAGCCTTAAACTT  800

seq1  CGCTTTTAAGGACAAATACAAAGAACTTTTCATGTCTGGTGTTAATAAAG  849
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CGCTTTT-AGGACAAATACAAAGAACTTTTCATGTCTGGTGTTAATAAAG  849

seq1  AAAAACAGGTAATTATGTTTCAATATGCCTAAAATTTTCTAAGAAACTAT  899
      ||||||||||||||||||||| |||||||||||| |||||||||||||||
seq2  AAAAACAGGTAATTATGTTTC-ATATGCCTAAAA-TTTCTAAGAAACTAT  897

seq1  TGAATTTGTCTTTCTTATGTCTTATTTAGACTGAAGGTACTCTGGTAAAA  949
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  TGAATTTGTCTTTCTTATGTCTTATTTAGATTGAAGGTACTCTGGT-AAA  946

seq1  ACGATATAATAATTGTAAAAATAATAAAAATAGAACACAATGTTGAAAGT  999
      ||||||||||| |||| |||||||||||||||| |||||||||||||| |
seq2  ACGATATAATATTTGT-AAAATAATAAAAATAG-ACACAATGTTGAAA-T  993

seq1  TAGCATATATTAAGTAATAAAAAATAT-ATAAAA-TTTGTATGTTATCTT  1047
      ||||||||||||||||||||||||||| |||||| ||||| || ||||||
seq2  TAGCATATATTAAGTAATAAAAAATATAATAAAATTTTGTTTG-TATCTT  1042

seq1  CAACAAATTTCATGAAATC-TCTTAGTTTCAGTAACTAGGGA  1088
      | |||||||||||| |||| ||||| ||||||| ||||||||
seq2  C-ACAAATTTCATGGAATCTTCTTAATTTCAGT-ACTAGGGA  1082