BAC Information

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BAC

Clone NameB6Ng01-101E03
Chromosome3 (Build37)
Map Location 135,106,854 - 135,237,032
singlet/doubletdoublet
Overlap geneUbe2d3, Manba, LOC668745
Upstream geneLOC100039234, Tacr3, LOC229837, LOC100039290, EG620439, Cenpe, Bdh2, C80638, 4933425K02Rik, Zcd2
Downstream geneNfkb1, ENSMUSG00000045520, Slc39a8, LOC100039350, LOC383923, Bank1, LOC100039477, LOC668868
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-101E03.bB6Ng01-101E03.g
ACCDH910501DH910502
length9261,116
definitionDH910501|Mus musculus domesticus DNA, BAC clone: B6Ng01-101E03, 5' end.DH910502|Mus musculus domesticus DNA, BAC clone: B6Ng01-101E03, 3' end.
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,236,091 - 135,237,032)(135,106,854 - 135,107,977)
sequence
gaattctttcttcaaagagatttcttgtttctatttctatatttgcttgt
ttgtgtgcaccgtgcgcacacaagtgccacggaacctagaaagtctttga
tggctcaaggcactcatagaaacatgcaagcaaaacacacacataaaata
aaaataaataagtcttaaaagtatcctatctgcctaatagctcccccctc
cccccaaatcctgatagaattattttagtcaaagctcggcccaggaatga
tgtcaaaggctctgaatttcccacataaacaatgctggtctgtttttcct
aatctgagaacatgcctcgaattctgaggtagcccaggagaataactctg
tttcagacgtctggcactttgagaagttagcaaacatatcttggtctctc
cagttcatcttcatccctacagagaaggacatcagtctgcttgttttctg
agtgacttcccaggtgcaacaatgtctcacaatgaaaagccaagcagtaa
ggaagagagaaaaagaactacagtgactgaaaggagagagttagttgccc
tgttccctgtttgggaatgggaagatgcacttctgtgacgtggggcctgc
cacccgacctctctggaacgcactttgcaaggttgtctccttgcctactg
ttccccaccaagactaaggaaaacctcagaaacccaaacccaagagttag
cacgtcagactccacccactacagtaacaggacaaaaaacatctgtcaaa
aggcacgaaggctctctgaagaacagcttgctactatcattacttaccgg
taatactttgttctgccagaaacttaaagtactgccaagcctgcagttaa
aagcctccaattggttggaatcatgacacagcttgtgttctcggcagcac
atcttgagactaaatgcttcatttat
gaattctgaacttgcacttagaaacttctgatggagctgggcagtggtgc
acacctttaatcccagggtgacagaggcatgtgtatctctgtaaattcaa
ggctagcctggtccacagagtgagttccaaaacaacagaagaagcactgt
ctcaaaaaccaaaagaaaaagaaacctctttggggttaacttaatcggta
tttcactggggttataattgcatttaagaaatcaagaatctctgctttgg
ttggaaaaatacatcaaacacagtatgtttattgctttgtacaacttatt
ttcaaaggtttatcaaaattctgttaccctgtatctgaatagttttgtga
gcttcttatgatcttagttaaaatttcactagtgttaatgagtgcattta
atctcttaagtgtccagccaagtctgccttaaattctaattttaaaactc
ctcaggcaactagtggagacacatacacttaggtatggcagtataaattg
gaggtcactttgggaatgtattgtctgcaacacaaaacaaaatgtcctca
agcttgttaatgtagggtaaagaagggggaaagtttatattttatacctt
gtttagacatgtgagtttattatctagggacctttcagataacttcatag
ctacatttgtcctaaagtgttttgatttctctcagttgtgacttagtatt
tcttgtttagatgtttcaggatggaaatgcttattcacattaatcttaac
aaatggatattaactaccagtagacagctaagtttttgtttttcatatct
actaaatgcctgacttgattccatggattaaagctttcttcttggtctat
tcaaaactgctacaaaaagattttctggggtaaaactttagtagagctta
aatttgcatgtcactaggcctagtttgaataatcttaagttgacttacct
tcaagggtgatctaaaggaaagaaaactgtagtattattcactcaggcca
ttcttagaaccttgtctataaacatacttgttctcactataataagacta
aacaggaagctaagcctgttctgtgattaggagcatagtgcacgaaccta
cctcttattcatacaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr3_135236091_135237032
seq2: B6Ng01-101E03.b_48_973 (reverse)

seq1  ATAAATGAAGCAATTTAG-CTCAAAGATGTGGCTGCCGAGACAACAGGGC  49
      ||||||||||| |||||| ||| ||||||| ||||||||||  |||  ||
seq2  ATAAATGAAGC-ATTTAGTCTC-AAGATGT-GCTGCCGAGAACACA-AGC  46

seq1  TGTTGTCATGATTCAAACCCACATTTGGAGGCTTTTTAACTGCAGGGCTT  99
      || ||||||||||| |||   || |||||||| ||||||||||| |||||
seq2  TG-TGTCATGATTCCAAC---CAATTGGAGGC-TTTTAACTGCA-GGCTT  90

seq1  TGGGCAGTAACTTTAGTTTTCTTTGGCAGAACACAGTATTACCCGTTAGG  149
        |||||| ||||||  ||||  |||||||||| ||||||| ||| || |
seq2  --GGCAGT-ACTTTAAGTTTC--TGGCAGAACAAAGTATTA-CCGGTAAG  134

seq1  TAATGATAGTAGCCAGCTGTTCTTCAGAGAGCCTTCGTGCCCTTTTGACA  199
      ||||||||||||| ||||||||||||||||||||||||| ||||||||||
seq2  TAATGATAGTAGCAAGCTGTTCTTCAGAGAGCCTTCGTG-CCTTTTGACA  183

seq1  GATG-TTTTTGTCCTGTTTACTGTAGTGGGTGGAGTCTGACGTGCTAACT  248
      |||| ||||||||||| |||||||||||||||||||||||||||||||||
seq2  GATGTTTTTTGTCCTG-TTACTGTAGTGGGTGGAGTCTGACGTGCTAACT  232

seq1  CTTGGGTTTGGGTTTCTGAGGTTTTCCTTAGTCTTGGTGGGGAACAGTAG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGTTTGGGTTTCTGAGGTTTTCCTTAGTCTTGGTGGGGAACAGTAG  282

seq1  GCAAGGAGACAACCTTGCAAAGTGCGTTCCAGAGAGGTCGGGTGGCAGGC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGAGACAACCTTGCAAAGTGCGTTCCAGAGAGGTCGGGTGGCAGGC  332

seq1  CCCACGTCACAGAAGTGCATCTTCCCATTCCCAAACAGGGAACAGGGCAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACGTCACAGAAGTGCATCTTCCCATTCCCAAACAGGGAACAGGGCAA  382

seq1  CTAACTCTCTCCTTTCAGTCACTGTAGTTCTTTTTCTCTCTTCCTTACTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTCTCTCCTTTCAGTCACTGTAGTTCTTTTTCTCTCTTCCTTACTG  432

seq1  CTTGGCTTTTCATTGTGAGACATTGTTGCACCTGGGAAGTCACTCAGAAA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCTTTTCATTGTGAGACATTGTTGCACCTGGGAAGTCACTCAGAAA  482

seq1  ACAAGCAGACTGATGTCCTTCTCTGTAGGGATGAAGATGAACTGGAGAGA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCAGACTGATGTCCTTCTCTGTAGGGATGAAGATGAACTGGAGAGA  532

seq1  CCAAGATATGTTTGCTAACTTCTCAAAGTGCCAGACGTCTGAAACAGAGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGATATGTTTGCTAACTTCTCAAAGTGCCAGACGTCTGAAACAGAGT  582

seq1  TATTCTCCTGGGCTACCTCAGAATTCGAGGCATGTTCTCAGATTAGGAAA  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTCCTGGGCTACCTCAGAATTCGAGGCATGTTCTCAGATTAGGAAA  632

seq1  AACAGACCAGCATTGTTTATGTGGGAAATTCAGAGCCTTTGACATCATTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGACCAGCATTGTTTATGTGGGAAATTCAGAGCCTTTGACATCATTC  682

seq1  CTGGGCCGAGCTTTGACTAAAATAATTCTATCAGGATTTGGGGGGAGGGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGCCGAGCTTTGACTAAAATAATTCTATCAGGATTTGGGGGGAGGGG  732

seq1  GGAGCTATTAGGCAGATAGGATACTTTTAAGACTTATTTATTTTTATTTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTATTAGGCAGATAGGATACTTTTAAGACTTATTTATTTTTATTTT  782

seq1  ATGTGTGTGTTTTGCTTGCATGTTTCTATGAGTGCCTTGAGCCATCAAAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGTGTGTTTTGCTTGCATGTTTCTATGAGTGCCTTGAGCCATCAAAG  832

seq1  ACTTTCTAGGTTCCGTGGCACTTGTGTGCGCACGGTGCACACAAACAAGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTCTAGGTTCCGTGGCACTTGTGTGCGCACGGTGCACACAAACAAGC  882

seq1  AAATATAGAAATAGAAACAAGAAATCTCTTTGAAGAAAGAATTC  942
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATATAGAAATAGAAACAAGAAATCTCTTTGAAGAAAGAATTC  926

seq1: chr3_135106854_135107977
seq2: B6Ng01-101E03.g_69_1184

seq1  GAATTCTGAACTTGCACTTAGAAACTTCTGATGGAGCTGGGCAGTGGTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGAACTTGCACTTAGAAACTTCTGATGGAGCTGGGCAGTGGTGC  50

seq1  ACACCTTTAATCCCAGGGTGACAGAGGCATGTGTATCTCTGTAAATTCAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCTTTAATCCCAGGGTGACAGAGGCATGTGTATCTCTGTAAATTCAA  100

seq1  GGCTAGCCTGGTCCACAGAGTGAGTTCCAAAACAACAGAAGAAGCACTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTAGCCTGGTCCACAGAGTGAGTTCCAAAACAACAGAAGAAGCACTGT  150

seq1  CTCAAAAACCAAAAGAAAAAGAAACCTCTTTGGGGTTAACTTAATCGGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAAAAACCAAAAGAAAAAGAAACCTCTTTGGGGTTAACTTAATCGGTA  200

seq1  TTTCACTGGGGTTATAATTGCATTTAAGAAATCAAGAATCTCTGCTTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTGGGGTTATAATTGCATTTAAGAAATCAAGAATCTCTGCTTTGG  250

seq1  TTGGAAAAATACATCAAACACAGTATGTTTATTGCTTTGTACAACTTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGAAAAATACATCAAACACAGTATGTTTATTGCTTTGTACAACTTATT  300

seq1  TTCAAAGGTTTATCAAAATTCTGTTACCCTGTATCTGAATAGTTTTGTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAGGTTTATCAAAATTCTGTTACCCTGTATCTGAATAGTTTTGTGA  350

seq1  GCTTCTTATGATCTTAGTTAAAATTTCACTAGTGTTAATGAGTGCATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTATGATCTTAGTTAAAATTTCACTAGTGTTAATGAGTGCATTTA  400

seq1  ATCTCTTAAGTGTCCAGCCAAGTCTGCCTTAAATTCTAATTTTAAAACTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTAAGTGTCCAGCCAAGTCTGCCTTAAATTCTAATTTTAAAACTC  450

seq1  CTCAGGCAACTAGTGGAGACACATACACTTAGGTATGGCAGTATAAATTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCAACTAGTGGAGACACATACACTTAGGTATGGCAGTATAAATTG  500

seq1  GAGGTCACTTTGGGAATGTATTGTCTGCAACACAAAACAAAATGTCCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTCACTTTGGGAATGTATTGTCTGCAACACAAAACAAAATGTCCTCA  550

seq1  AGCTTGTTAATGTAGGGTAAAGAAGGGGGAAAGTTTATATTTTATACCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGTTAATGTAGGGTAAAGAAGGGGGAAAGTTTATATTTTATACCTT  600

seq1  GTTTAGACATGTGAGTTTATTATCTAGGGACCTTTCAGATAACTTCATAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGACATGTGAGTTTATTATCTAGGGACCTTTCAGATAACTTCATAG  650

seq1  CTACATTTGTCCTAAAGTGTTTTGATTTCTCTCAGTTGTGACTTAGTATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTGTCCTAAAGTGTTTTGATTTCTCTCAGTTGTGACTTAGTATT  700

seq1  TCTTGTTTAGATGTTTCAGGATGGAAATGCTTATTCACATTAATCTTAAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGTTTAGATGTTTCAGGATGGAAATGCTTATTCACATTAATCTTAAC  750

seq1  AAATGGATATTAACTACCAGTAGACAGCTAAGTTTTTGTTTTTCATATCT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATATTAACTACCAGTAGACAGCTAAGTTTTTGTTTTTCATATCT  800

seq1  ACTAAATGCCTGACTTGATTCCATGGATTAAAGCTTTCTTCTTGGTCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAATGCCTGACTTGATTCCATGGATTAAAGCTTTCTTCTTGGTCTAT  850

seq1  TCAAAACTGCTTACAAAAAGATTTTTCTGGGGTAAAACTTTAGTAGAGC-  899
      |||||||||| |||||||||| ||||||||||||||||||||||||||| 
seq2  TCAAAACTGC-TACAAAAAGA-TTTTCTGGGGTAAAACTTTAGTAGAGCT  898

seq1  TAAATTTGCATGTCACTAGGCCTAGTTTTGAATAATCTTAAG-TGACTTA  948
      ||||||||||||||||||||||||| |||||||||||||||| |||||||
seq2  TAAATTTGCATGTCACTAGGCCTAG-TTTGAATAATCTTAAGTTGACTTA  947

seq1  CCTTCAAGGGTGATCTAAA-GAAAGAAAACTGTAGTATTATTCACTCAGG  997
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCTTCAAGGGTGATCTAAAGGAAAGAAAACTGTAGTATTATTCACTCAGG  997

seq1  CCATTCTTAGAACCTTGTCTAATAAACATACTTG-TCTCACCTATAATTA  1046
      |||||||||||||||||||| ||||||||||||| ||||| ||||||| |
seq2  CCATTCTTAGAACCTTGTCT-ATAAACATACTTGTTCTCA-CTATAATAA  1045

seq1  GAACTAAACAGGAAGCTAATGCCTTGTCTGTGATGTAAGGCAGCATAGTG  1096
      | ||||||||||||||||| ||||  |||||||| ||  | |||||||||
seq2  G-ACTAAACAGGAAGCTAA-GCCTGTTCTGTGAT-TA--GGAGCATAGTG  1090

seq1  CACAGAACCTACCTTTTAATCCATACAA  1124
      ||| |||||||||| || || |||||||
seq2  CAC-GAACCTACCTCTT-ATTCATACAA  1116